Experiment: Choline Lysine 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_772 and Pf6N2E2_773 are separated by 273 nucleotides Pf6N2E2_773 and Pf6N2E2_774 overlap by 4 nucleotides Pf6N2E2_774 and Pf6N2E2_775 are separated by 4 nucleotides Pf6N2E2_775 and Pf6N2E2_776 overlap by 4 nucleotides
Pf6N2E2_772 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 882,325 to 883,959
_772
Pf6N2E2_773 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 884,233 to 885,063
_773
Pf6N2E2_774 - Cold-shock DNA-binding domain, at 885,060 to 885,479
_774
Pf6N2E2_775 - FIG00955061: hypothetical protein, at 885,484 to 885,834
_775
Pf6N2E2_776 - Transcriptional regulator, LysR family, at 885,831 to 886,739
_776
Position (kb) 884
885
886 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 883.427 kb on + strand, within Pf6N2E2_772 at 883.428 kb on - strand, within Pf6N2E2_772 at 883.475 kb on + strand, within Pf6N2E2_772 at 883.475 kb on + strand, within Pf6N2E2_772 at 883.475 kb on + strand, within Pf6N2E2_772 at 883.475 kb on + strand, within Pf6N2E2_772 at 883.476 kb on - strand, within Pf6N2E2_772 at 883.523 kb on + strand, within Pf6N2E2_772 at 883.524 kb on - strand, within Pf6N2E2_772 at 883.524 kb on - strand, within Pf6N2E2_772 at 883.524 kb on - strand, within Pf6N2E2_772 at 883.683 kb on - strand, within Pf6N2E2_772 at 883.697 kb on + strand, within Pf6N2E2_772 at 883.698 kb on - strand, within Pf6N2E2_772 at 883.698 kb on - strand, within Pf6N2E2_772 at 883.712 kb on - strand, within Pf6N2E2_772 at 883.778 kb on + strand, within Pf6N2E2_772 at 883.779 kb on - strand, within Pf6N2E2_772 at 883.781 kb on + strand, within Pf6N2E2_772 at 883.781 kb on + strand, within Pf6N2E2_772 at 883.864 kb on - strand at 883.864 kb on - strand at 883.864 kb on - strand at 883.953 kb on + strand at 883.953 kb on + strand at 883.954 kb on - strand at 883.954 kb on - strand at 883.959 kb on + strand at 883.960 kb on - strand at 883.960 kb on - strand at 883.981 kb on - strand at 883.981 kb on - strand at 883.991 kb on + strand at 883.991 kb on + strand at 884.009 kb on + strand at 884.076 kb on + strand at 884.273 kb on + strand at 884.325 kb on + strand, within Pf6N2E2_773 at 884.325 kb on + strand, within Pf6N2E2_773 at 884.837 kb on - strand, within Pf6N2E2_773 at 884.846 kb on - strand, within Pf6N2E2_773 at 884.846 kb on - strand, within Pf6N2E2_773 at 884.851 kb on + strand, within Pf6N2E2_773 at 884.968 kb on + strand, within Pf6N2E2_773 at 884.968 kb on + strand, within Pf6N2E2_773 at 884.968 kb on + strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 884.969 kb on - strand, within Pf6N2E2_773 at 885.469 kb on - strand at 885.485 kb on + strand at 885.486 kb on - strand at 885.486 kb on - strand at 885.624 kb on - strand, within Pf6N2E2_775 at 885.770 kb on + strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.771 kb on - strand, within Pf6N2E2_775 at 885.834 kb on + strand at 885.842 kb on + strand at 885.843 kb on - strand at 885.843 kb on - strand at 885.843 kb on - strand at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand, within Pf6N2E2_776 at 886.006 kb on + strand at 886.006 kb on + strand, within Pf6N2E2_776 at 886.007 kb on - strand, within Pf6N2E2_776 at 886.007 kb on - strand, within Pf6N2E2_776 at 886.007 kb on - strand, within Pf6N2E2_776 at 886.010 kb on + strand, within Pf6N2E2_776 at 886.010 kb on + strand, within Pf6N2E2_776 at 886.011 kb on - strand, within Pf6N2E2_776 at 886.020 kb on + strand, within Pf6N2E2_776
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 20 mM remove 883,427 + Pf6N2E2_772 0.67 +0.9 883,428 - Pf6N2E2_772 0.67 -1.5 883,475 + Pf6N2E2_772 0.70 +0.0 883,475 + Pf6N2E2_772 0.70 +0.5 883,475 + Pf6N2E2_772 0.70 -0.3 883,475 + Pf6N2E2_772 0.70 -1.5 883,476 - Pf6N2E2_772 0.70 +1.0 883,523 + Pf6N2E2_772 0.73 -1.3 883,524 - Pf6N2E2_772 0.73 +0.9 883,524 - Pf6N2E2_772 0.73 -0.4 883,524 - Pf6N2E2_772 0.73 +0.7 883,683 - Pf6N2E2_772 0.83 +0.3 883,697 + Pf6N2E2_772 0.84 -0.5 883,698 - Pf6N2E2_772 0.84 -0.8 883,698 - Pf6N2E2_772 0.84 +0.6 883,712 - Pf6N2E2_772 0.85 -0.4 883,778 + Pf6N2E2_772 0.89 -0.2 883,779 - Pf6N2E2_772 0.89 -0.2 883,781 + Pf6N2E2_772 0.89 +1.1 883,781 + Pf6N2E2_772 0.89 -0.4 883,864 - -0.7 883,864 - -0.1 883,864 - -0.4 883,953 + +0.3 883,953 + +0.2 883,954 - +0.1 883,954 - +0.2 883,959 + +0.7 883,960 - -0.4 883,960 - +0.3 883,981 - -0.8 883,981 - -0.2 883,991 + -2.2 883,991 + +1.5 884,009 + +1.0 884,076 + +0.4 884,273 + -1.6 884,325 + Pf6N2E2_773 0.11 -1.8 884,325 + Pf6N2E2_773 0.11 -3.5 884,837 - Pf6N2E2_773 0.73 -3.2 884,846 - Pf6N2E2_773 0.74 -2.9 884,846 - Pf6N2E2_773 0.74 -2.4 884,851 + Pf6N2E2_773 0.74 -0.9 884,968 + Pf6N2E2_773 0.88 -3.9 884,968 + Pf6N2E2_773 0.88 -1.2 884,968 + Pf6N2E2_773 0.88 -3.4 884,969 - Pf6N2E2_773 0.89 -2.2 884,969 - Pf6N2E2_773 0.89 -2.0 884,969 - Pf6N2E2_773 0.89 -1.9 884,969 - Pf6N2E2_773 0.89 -2.0 884,969 - Pf6N2E2_773 0.89 -3.7 884,969 - Pf6N2E2_773 0.89 -2.4 885,469 - -2.0 885,485 + -0.6 885,486 - -0.3 885,486 - -0.0 885,624 - Pf6N2E2_775 0.40 +0.9 885,770 + Pf6N2E2_775 0.81 +0.3 885,771 - Pf6N2E2_775 0.82 +1.0 885,771 - Pf6N2E2_775 0.82 -0.6 885,771 - Pf6N2E2_775 0.82 +0.3 885,771 - Pf6N2E2_775 0.82 +0.2 885,771 - Pf6N2E2_775 0.82 -0.1 885,834 + +0.1 885,842 + +0.6 885,843 - -1.0 885,843 - -0.6 885,843 - +0.1 886,006 + Pf6N2E2_776 0.19 -0.2 886,006 + Pf6N2E2_776 0.19 +0.8 886,006 + Pf6N2E2_776 0.19 -2.8 886,006 + Pf6N2E2_776 0.19 -0.7 886,006 + Pf6N2E2_776 0.19 -0.3 886,006 + -1.0 886,006 + Pf6N2E2_776 0.19 +0.6 886,007 - Pf6N2E2_776 0.19 -0.7 886,007 - Pf6N2E2_776 0.19 -1.0 886,007 - Pf6N2E2_776 0.19 -0.3 886,010 + Pf6N2E2_776 0.20 -0.3 886,010 + Pf6N2E2_776 0.20 +0.3 886,011 - Pf6N2E2_776 0.20 -0.6 886,020 + Pf6N2E2_776 0.21 -2.8
Or see this region's nucleotide sequence