Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5944

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5942 and Pf6N2E2_5943 overlap by 21 nucleotidesPf6N2E2_5943 and Pf6N2E2_5944 are separated by 312 nucleotidesPf6N2E2_5944 and Pf6N2E2_5945 overlap by 11 nucleotidesPf6N2E2_5945 and Pf6N2E2_5946 are separated by 20 nucleotides Pf6N2E2_5942 - Ribonuclease E (EC 3.1.26.12), at 6,761,732 to 6,764,929 _5942 Pf6N2E2_5943 - hypothetical protein, at 6,764,909 to 6,765,313 _5943 Pf6N2E2_5944 - Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70), at 6,765,626 to 6,766,594 _5944 Pf6N2E2_5945 - Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C, at 6,766,584 to 6,767,246 _5945 Pf6N2E2_5946 - Periplasmic serine proteases (ClpP class), at 6,767,267 to 6,768,256 _5946 Position (kb) 6765 6766 6767Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6765.269 kb on - strand, within Pf6N2E2_5943at 6765.269 kb on - strand, within Pf6N2E2_5943at 6765.269 kb on - strand, within Pf6N2E2_5943at 6765.307 kb on - strandat 6765.307 kb on - strandat 6765.307 kb on - strandat 6765.307 kb on - strandat 6765.421 kb on - strandat 6765.598 kb on - strandat 6765.625 kb on + strandat 6765.646 kb on + strandat 6765.646 kb on + strandat 6765.646 kb on + strandat 6765.646 kb on + strandat 6765.647 kb on - strandat 6765.716 kb on - strandat 6765.818 kb on + strand, within Pf6N2E2_5944at 6765.928 kb on + strand, within Pf6N2E2_5944at 6765.928 kb on + strand, within Pf6N2E2_5944at 6765.928 kb on + strand, within Pf6N2E2_5944at 6765.932 kb on + strand, within Pf6N2E2_5944at 6765.932 kb on + strand, within Pf6N2E2_5944at 6765.932 kb on + strand, within Pf6N2E2_5944at 6765.973 kb on + strand, within Pf6N2E2_5944at 6766.170 kb on - strand, within Pf6N2E2_5944at 6766.387 kb on + strand, within Pf6N2E2_5944at 6766.387 kb on + strand, within Pf6N2E2_5944at 6766.388 kb on - strand, within Pf6N2E2_5944at 6766.428 kb on - strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.493 kb on + strand, within Pf6N2E2_5944at 6766.494 kb on - strand, within Pf6N2E2_5944at 6766.596 kb on + strandat 6766.689 kb on + strand, within Pf6N2E2_5945at 6766.708 kb on + strand, within Pf6N2E2_5945at 6766.748 kb on + strand, within Pf6N2E2_5945at 6766.818 kb on + strand, within Pf6N2E2_5945at 6766.819 kb on - strand, within Pf6N2E2_5945at 6766.896 kb on + strand, within Pf6N2E2_5945at 6766.971 kb on + strand, within Pf6N2E2_5945at 6766.971 kb on + strand, within Pf6N2E2_5945at 6766.972 kb on - strand, within Pf6N2E2_5945at 6767.145 kb on + strand, within Pf6N2E2_5945at 6767.393 kb on - strand, within Pf6N2E2_5946at 6767.393 kb on - strand, within Pf6N2E2_5946at 6767.416 kb on + strand, within Pf6N2E2_5946at 6767.416 kb on + strand, within Pf6N2E2_5946at 6767.416 kb on + strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.420 kb on + strand, within Pf6N2E2_5946at 6767.421 kb on - strand, within Pf6N2E2_5946at 6767.421 kb on - strand, within Pf6N2E2_5946at 6767.493 kb on - strand, within Pf6N2E2_5946at 6767.493 kb on - strand, within Pf6N2E2_5946

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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6,765,269 - Pf6N2E2_5943 0.89 +1.0
6,765,269 - Pf6N2E2_5943 0.89 -0.9
6,765,269 - Pf6N2E2_5943 0.89 -2.9
6,765,307 - +0.7
6,765,307 - -1.5
6,765,307 - -1.4
6,765,307 - +0.4
6,765,421 - -1.4
6,765,598 - -0.1
6,765,625 + -2.0
6,765,646 + -1.7
6,765,646 + -2.2
6,765,646 + -3.8
6,765,646 + -2.1
6,765,647 - -0.8
6,765,716 - -1.2
6,765,818 + Pf6N2E2_5944 0.20 -2.2
6,765,928 + Pf6N2E2_5944 0.31 +0.3
6,765,928 + Pf6N2E2_5944 0.31 -2.7
6,765,928 + Pf6N2E2_5944 0.31 -2.0
6,765,932 + Pf6N2E2_5944 0.32 -2.2
6,765,932 + Pf6N2E2_5944 0.32 -1.4
6,765,932 + Pf6N2E2_5944 0.32 +0.4
6,765,973 + Pf6N2E2_5944 0.36 -2.3
6,766,170 - Pf6N2E2_5944 0.56 -0.6
6,766,387 + Pf6N2E2_5944 0.79 -1.7
6,766,387 + Pf6N2E2_5944 0.79 -0.4
6,766,388 - Pf6N2E2_5944 0.79 -1.8
6,766,428 - Pf6N2E2_5944 0.83 -0.7
6,766,493 + Pf6N2E2_5944 0.89 -1.7
6,766,493 + Pf6N2E2_5944 0.89 -0.9
6,766,493 + Pf6N2E2_5944 0.89 -1.3
6,766,493 + Pf6N2E2_5944 0.89 -2.4
6,766,493 + Pf6N2E2_5944 0.89 +1.0
6,766,493 + Pf6N2E2_5944 0.89 -1.7
6,766,493 + Pf6N2E2_5944 0.89 -0.9
6,766,493 + Pf6N2E2_5944 0.89 -1.9
6,766,493 + Pf6N2E2_5944 0.89 -1.8
6,766,493 + Pf6N2E2_5944 0.89 -0.3
6,766,493 + Pf6N2E2_5944 0.89 -2.7
6,766,494 - Pf6N2E2_5944 0.90 -2.1
6,766,596 + +0.4
6,766,689 + Pf6N2E2_5945 0.16 -2.7
6,766,708 + Pf6N2E2_5945 0.19 -1.9
6,766,748 + Pf6N2E2_5945 0.25 -3.3
6,766,818 + Pf6N2E2_5945 0.35 -0.3
6,766,819 - Pf6N2E2_5945 0.35 -0.2
6,766,896 + Pf6N2E2_5945 0.47 +0.0
6,766,971 + Pf6N2E2_5945 0.58 -0.2
6,766,971 + Pf6N2E2_5945 0.58 -0.0
6,766,972 - Pf6N2E2_5945 0.59 -0.6
6,767,145 + Pf6N2E2_5945 0.85 -0.6
6,767,393 - Pf6N2E2_5946 0.13 +0.7
6,767,393 - Pf6N2E2_5946 0.13 +0.9
6,767,416 + Pf6N2E2_5946 0.15 +0.4
6,767,416 + Pf6N2E2_5946 0.15 +0.8
6,767,416 + Pf6N2E2_5946 0.15 -0.4
6,767,417 - Pf6N2E2_5946 0.15 -0.2
6,767,417 - Pf6N2E2_5946 0.15 +1.1
6,767,417 - Pf6N2E2_5946 0.15 +0.1
6,767,417 - Pf6N2E2_5946 0.15 -0.3
6,767,417 - Pf6N2E2_5946 0.15 -0.2
6,767,417 - Pf6N2E2_5946 0.15 +0.3
6,767,417 - Pf6N2E2_5946 0.15 +0.1
6,767,417 - Pf6N2E2_5946 0.15 +0.1
6,767,417 - Pf6N2E2_5946 0.15 +0.7
6,767,417 - Pf6N2E2_5946 0.15 +0.1
6,767,420 + Pf6N2E2_5946 0.15 +0.2
6,767,421 - Pf6N2E2_5946 0.16 -1.5
6,767,421 - Pf6N2E2_5946 0.16 -1.0
6,767,493 - Pf6N2E2_5946 0.23 -1.9
6,767,493 - Pf6N2E2_5946 0.23 -0.4

Or see this region's nucleotide sequence