Experiment: Choline Lysine 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_50 and Pf6N2E2_51 are separated by 15 nucleotides Pf6N2E2_51 and Pf6N2E2_52 are separated by 121 nucleotides Pf6N2E2_52 and Pf6N2E2_53 are separated by 224 nucleotides
Pf6N2E2_50 - Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57), at 88,788 to 89,984
_50
Pf6N2E2_51 - hypothetical protein, at 90,000 to 90,194
_51
Pf6N2E2_52 - Excinuclease ABC subunit B, at 90,316 to 92,331
_52
Pf6N2E2_53 - Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24), at 92,556 to 94,037
_53
Position (kb)
90
91
92
93 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 89.530 kb on + strand, within Pf6N2E2_50 at 89.531 kb on - strand, within Pf6N2E2_50 at 89.758 kb on + strand, within Pf6N2E2_50 at 89.759 kb on - strand, within Pf6N2E2_50 at 89.786 kb on - strand, within Pf6N2E2_50 at 89.786 kb on - strand, within Pf6N2E2_50 at 89.786 kb on - strand, within Pf6N2E2_50 at 89.786 kb on - strand, within Pf6N2E2_50 at 89.852 kb on + strand, within Pf6N2E2_50 at 89.852 kb on + strand, within Pf6N2E2_50 at 89.853 kb on - strand, within Pf6N2E2_50 at 89.853 kb on - strand, within Pf6N2E2_50 at 89.872 kb on + strand at 89.872 kb on + strand at 89.873 kb on - strand at 89.903 kb on + strand at 89.985 kb on + strand at 89.986 kb on - strand at 89.998 kb on + strand at 89.999 kb on - strand at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.065 kb on + strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.066 kb on - strand, within Pf6N2E2_51 at 90.068 kb on + strand, within Pf6N2E2_51 at 90.068 kb on + strand, within Pf6N2E2_51 at 90.068 kb on + strand, within Pf6N2E2_51 at 90.068 kb on + strand, within Pf6N2E2_51 at 90.069 kb on - strand, within Pf6N2E2_51 at 90.069 kb on - strand, within Pf6N2E2_51 at 90.070 kb on + strand, within Pf6N2E2_51 at 90.070 kb on + strand, within Pf6N2E2_51 at 90.070 kb on + strand, within Pf6N2E2_51 at 90.070 kb on + strand, within Pf6N2E2_51 at 90.071 kb on - strand, within Pf6N2E2_51 at 90.178 kb on + strand at 90.178 kb on + strand at 90.310 kb on + strand at 90.310 kb on + strand at 90.310 kb on + strand at 90.311 kb on - strand at 90.332 kb on + strand at 90.332 kb on + strand at 90.333 kb on - strand at 90.532 kb on + strand, within Pf6N2E2_52 at 90.532 kb on + strand, within Pf6N2E2_52 at 90.574 kb on + strand, within Pf6N2E2_52 at 90.574 kb on + strand, within Pf6N2E2_52 at 90.575 kb on - strand, within Pf6N2E2_52 at 90.586 kb on + strand, within Pf6N2E2_52 at 90.587 kb on - strand, within Pf6N2E2_52 at 90.595 kb on + strand, within Pf6N2E2_52 at 90.595 kb on + strand, within Pf6N2E2_52 at 90.598 kb on + strand, within Pf6N2E2_52 at 90.599 kb on - strand, within Pf6N2E2_52 at 90.599 kb on - strand, within Pf6N2E2_52 at 90.599 kb on - strand, within Pf6N2E2_52 at 90.613 kb on + strand, within Pf6N2E2_52 at 90.614 kb on - strand, within Pf6N2E2_52 at 90.614 kb on - strand, within Pf6N2E2_52 at 90.748 kb on + strand, within Pf6N2E2_52 at 90.748 kb on + strand, within Pf6N2E2_52 at 90.749 kb on - strand, within Pf6N2E2_52 at 90.772 kb on + strand, within Pf6N2E2_52 at 90.773 kb on - strand, within Pf6N2E2_52 at 90.773 kb on - strand, within Pf6N2E2_52 at 90.773 kb on - strand, within Pf6N2E2_52 at 90.853 kb on + strand, within Pf6N2E2_52 at 90.853 kb on + strand, within Pf6N2E2_52 at 90.853 kb on + strand, within Pf6N2E2_52 at 90.854 kb on - strand, within Pf6N2E2_52 at 90.854 kb on - strand, within Pf6N2E2_52 at 91.043 kb on - strand, within Pf6N2E2_52 at 91.057 kb on + strand, within Pf6N2E2_52 at 91.058 kb on - strand, within Pf6N2E2_52 at 91.058 kb on - strand, within Pf6N2E2_52 at 91.129 kb on + strand, within Pf6N2E2_52 at 91.130 kb on - strand, within Pf6N2E2_52 at 91.217 kb on - strand, within Pf6N2E2_52 at 91.237 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.288 kb on + strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.289 kb on - strand, within Pf6N2E2_52 at 91.295 kb on - strand, within Pf6N2E2_52 at 91.363 kb on + strand, within Pf6N2E2_52 at 91.363 kb on + strand, within Pf6N2E2_52 at 91.363 kb on + strand, within Pf6N2E2_52 at 91.364 kb on - strand, within Pf6N2E2_52 at 91.364 kb on - strand, within Pf6N2E2_52 at 91.364 kb on - strand, within Pf6N2E2_52 at 91.507 kb on + strand, within Pf6N2E2_52 at 91.507 kb on + strand, within Pf6N2E2_52 at 91.507 kb on + strand, within Pf6N2E2_52 at 91.508 kb on - strand, within Pf6N2E2_52 at 91.508 kb on - strand, within Pf6N2E2_52 at 91.508 kb on - strand, within Pf6N2E2_52 at 91.733 kb on - strand, within Pf6N2E2_52 at 92.177 kb on - strand at 92.243 kb on - strand at 92.536 kb on + strand at 92.536 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 20 mM remove 89,530 + Pf6N2E2_50 0.62 -0.4 89,531 - Pf6N2E2_50 0.62 +0.6 89,758 + Pf6N2E2_50 0.81 +0.3 89,759 - Pf6N2E2_50 0.81 -1.0 89,786 - Pf6N2E2_50 0.83 -1.5 89,786 - Pf6N2E2_50 0.83 +0.8 89,786 - Pf6N2E2_50 0.83 -1.7 89,786 - Pf6N2E2_50 0.83 +1.1 89,852 + Pf6N2E2_50 0.89 +0.2 89,852 + Pf6N2E2_50 0.89 +0.4 89,853 - Pf6N2E2_50 0.89 -0.5 89,853 - Pf6N2E2_50 0.89 +0.3 89,872 + +0.2 89,872 + -2.3 89,873 - +0.0 89,903 + +0.1 89,985 + +0.5 89,986 - +0.7 89,998 + +0.6 89,999 - -0.9 90,065 + Pf6N2E2_51 0.33 -0.3 90,065 + Pf6N2E2_51 0.33 +1.1 90,065 + Pf6N2E2_51 0.33 +0.1 90,065 + Pf6N2E2_51 0.33 +0.6 90,065 + Pf6N2E2_51 0.33 -0.2 90,065 + Pf6N2E2_51 0.33 +0.6 90,066 - Pf6N2E2_51 0.34 -0.5 90,066 - Pf6N2E2_51 0.34 -1.0 90,066 - Pf6N2E2_51 0.34 +0.0 90,066 - Pf6N2E2_51 0.34 -0.1 90,066 - Pf6N2E2_51 0.34 -1.6 90,066 - Pf6N2E2_51 0.34 +0.1 90,066 - Pf6N2E2_51 0.34 -0.0 90,066 - Pf6N2E2_51 0.34 +0.0 90,066 - Pf6N2E2_51 0.34 -1.7 90,066 - Pf6N2E2_51 0.34 +0.3 90,068 + Pf6N2E2_51 0.35 +1.0 90,068 + Pf6N2E2_51 0.35 -0.3 90,068 + Pf6N2E2_51 0.35 +1.3 90,068 + Pf6N2E2_51 0.35 -0.6 90,069 - Pf6N2E2_51 0.35 +0.5 90,069 - Pf6N2E2_51 0.35 +1.2 90,070 + Pf6N2E2_51 0.36 -1.2 90,070 + Pf6N2E2_51 0.36 -0.2 90,070 + Pf6N2E2_51 0.36 +0.4 90,070 + Pf6N2E2_51 0.36 +0.8 90,071 - Pf6N2E2_51 0.36 +0.6 90,178 + +0.1 90,178 + -0.3 90,310 + +0.6 90,310 + -1.2 90,310 + -1.1 90,311 - -1.8 90,332 + -0.4 90,332 + -1.6 90,333 - -0.6 90,532 + Pf6N2E2_52 0.11 -1.5 90,532 + Pf6N2E2_52 0.11 -0.7 90,574 + Pf6N2E2_52 0.13 -1.4 90,574 + Pf6N2E2_52 0.13 -1.1 90,575 - Pf6N2E2_52 0.13 -2.9 90,586 + Pf6N2E2_52 0.13 -0.2 90,587 - Pf6N2E2_52 0.13 -0.7 90,595 + Pf6N2E2_52 0.14 -1.3 90,595 + Pf6N2E2_52 0.14 -1.3 90,598 + Pf6N2E2_52 0.14 -1.8 90,599 - Pf6N2E2_52 0.14 -0.7 90,599 - Pf6N2E2_52 0.14 -2.8 90,599 - Pf6N2E2_52 0.14 -1.2 90,613 + Pf6N2E2_52 0.15 -1.0 90,614 - Pf6N2E2_52 0.15 -1.0 90,614 - Pf6N2E2_52 0.15 +0.5 90,748 + Pf6N2E2_52 0.21 -1.2 90,748 + Pf6N2E2_52 0.21 -0.5 90,749 - Pf6N2E2_52 0.21 +0.3 90,772 + Pf6N2E2_52 0.23 -3.2 90,773 - Pf6N2E2_52 0.23 -0.3 90,773 - Pf6N2E2_52 0.23 -2.8 90,773 - Pf6N2E2_52 0.23 -0.6 90,853 + Pf6N2E2_52 0.27 -0.5 90,853 + Pf6N2E2_52 0.27 -1.3 90,853 + Pf6N2E2_52 0.27 -1.9 90,854 - Pf6N2E2_52 0.27 -1.5 90,854 - Pf6N2E2_52 0.27 +0.6 91,043 - Pf6N2E2_52 0.36 +0.3 91,057 + Pf6N2E2_52 0.37 -2.0 91,058 - Pf6N2E2_52 0.37 -0.9 91,058 - Pf6N2E2_52 0.37 +0.1 91,129 + Pf6N2E2_52 0.40 -0.3 91,130 - Pf6N2E2_52 0.40 -2.9 91,217 - Pf6N2E2_52 0.45 -2.2 91,237 + Pf6N2E2_52 0.46 +0.3 91,288 + Pf6N2E2_52 0.48 -2.2 91,288 + Pf6N2E2_52 0.48 +0.2 91,288 + Pf6N2E2_52 0.48 -1.2 91,288 + Pf6N2E2_52 0.48 +0.0 91,288 + Pf6N2E2_52 0.48 -1.0 91,288 + Pf6N2E2_52 0.48 -0.6 91,288 + Pf6N2E2_52 0.48 -1.1 91,288 + Pf6N2E2_52 0.48 +0.0 91,288 + Pf6N2E2_52 0.48 -1.9 91,288 + Pf6N2E2_52 0.48 -2.0 91,288 + Pf6N2E2_52 0.48 -1.2 91,288 + Pf6N2E2_52 0.48 -0.4 91,288 + Pf6N2E2_52 0.48 -0.8 91,288 + Pf6N2E2_52 0.48 -1.8 91,288 + Pf6N2E2_52 0.48 -1.9 91,288 + Pf6N2E2_52 0.48 +0.1 91,288 + Pf6N2E2_52 0.48 -1.9 91,288 + Pf6N2E2_52 0.48 -2.6 91,289 - Pf6N2E2_52 0.48 -0.3 91,289 - Pf6N2E2_52 0.48 -2.8 91,289 - Pf6N2E2_52 0.48 -1.2 91,289 - Pf6N2E2_52 0.48 -3.3 91,289 - Pf6N2E2_52 0.48 -2.3 91,289 - Pf6N2E2_52 0.48 -0.4 91,289 - Pf6N2E2_52 0.48 -1.7 91,295 - Pf6N2E2_52 0.49 -2.4 91,363 + Pf6N2E2_52 0.52 -0.3 91,363 + Pf6N2E2_52 0.52 -0.3 91,363 + Pf6N2E2_52 0.52 -1.1 91,364 - Pf6N2E2_52 0.52 -0.7 91,364 - Pf6N2E2_52 0.52 -1.6 91,364 - Pf6N2E2_52 0.52 -1.1 91,507 + Pf6N2E2_52 0.59 -2.5 91,507 + Pf6N2E2_52 0.59 -1.1 91,507 + Pf6N2E2_52 0.59 -0.6 91,508 - Pf6N2E2_52 0.59 -0.7 91,508 - Pf6N2E2_52 0.59 -1.2 91,508 - Pf6N2E2_52 0.59 -0.8 91,733 - Pf6N2E2_52 0.70 -0.4 92,177 - -0.4 92,243 - -0.4 92,536 + +0.9 92,536 + -0.4
Or see this region's nucleotide sequence