Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4992

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4991 and Pf6N2E2_4992 are separated by 58 nucleotidesPf6N2E2_4992 and Pf6N2E2_4993 are separated by 220 nucleotides Pf6N2E2_4991 - DedA protein, at 5,756,878 to 5,758,194 _4991 Pf6N2E2_4992 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 5,758,253 to 5,758,930 _4992 Pf6N2E2_4993 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 5,759,151 to 5,760,398 _4993 Position (kb) 5758 5759Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5757.723 kb on - strand, within Pf6N2E2_4991at 5757.723 kb on - strand, within Pf6N2E2_4991at 5757.875 kb on + strand, within Pf6N2E2_4991at 5757.875 kb on + strand, within Pf6N2E2_4991at 5757.876 kb on - strand, within Pf6N2E2_4991at 5757.876 kb on - strand, within Pf6N2E2_4991at 5757.876 kb on - strand, within Pf6N2E2_4991at 5757.876 kb on - strand, within Pf6N2E2_4991at 5757.876 kb on - strand, within Pf6N2E2_4991at 5757.962 kb on + strand, within Pf6N2E2_4991at 5757.963 kb on - strand, within Pf6N2E2_4991at 5757.963 kb on - strand, within Pf6N2E2_4991at 5757.963 kb on - strand, within Pf6N2E2_4991at 5758.194 kb on + strandat 5758.195 kb on - strandat 5758.195 kb on - strandat 5758.198 kb on + strandat 5758.198 kb on + strandat 5758.198 kb on + strandat 5758.198 kb on + strandat 5758.198 kb on + strandat 5758.199 kb on - strandat 5758.199 kb on - strandat 5758.199 kb on - strandat 5758.199 kb on - strandat 5758.199 kb on - strandat 5758.199 kb on - strandat 5758.199 kb on - strandat 5758.199 kb on - strandat 5758.199 kb on - strandat 5758.199 kb on - strandat 5758.216 kb on + strandat 5758.216 kb on + strandat 5758.217 kb on - strandat 5758.217 kb on - strandat 5758.217 kb on - strandat 5758.352 kb on + strand, within Pf6N2E2_4992at 5758.352 kb on + strand, within Pf6N2E2_4992at 5758.352 kb on + strand, within Pf6N2E2_4992at 5758.353 kb on - strand, within Pf6N2E2_4992at 5758.353 kb on - strand, within Pf6N2E2_4992at 5758.353 kb on - strand, within Pf6N2E2_4992at 5758.689 kb on + strand, within Pf6N2E2_4992at 5758.690 kb on - strand, within Pf6N2E2_4992at 5758.692 kb on + strand, within Pf6N2E2_4992at 5758.692 kb on + strand, within Pf6N2E2_4992at 5758.692 kb on + strand, within Pf6N2E2_4992at 5758.692 kb on + strand, within Pf6N2E2_4992at 5758.692 kb on + strand, within Pf6N2E2_4992at 5758.692 kb on + strand, within Pf6N2E2_4992at 5758.692 kb on + strand, within Pf6N2E2_4992at 5758.692 kb on + strand, within Pf6N2E2_4992at 5758.692 kb on + strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.693 kb on - strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.696 kb on + strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.697 kb on - strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.698 kb on + strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.699 kb on - strand, within Pf6N2E2_4992at 5758.730 kb on - strand, within Pf6N2E2_4992at 5758.730 kb on - strand, within Pf6N2E2_4992at 5758.779 kb on + strand, within Pf6N2E2_4992at 5758.779 kb on + strand, within Pf6N2E2_4992at 5758.779 kb on + strand, within Pf6N2E2_4992at 5758.779 kb on + strand, within Pf6N2E2_4992at 5758.779 kb on + strand, within Pf6N2E2_4992at 5758.779 kb on + strand, within Pf6N2E2_4992at 5758.779 kb on + strand, within Pf6N2E2_4992at 5758.780 kb on - strand, within Pf6N2E2_4992at 5758.780 kb on - strand, within Pf6N2E2_4992at 5758.780 kb on - strand, within Pf6N2E2_4992at 5758.780 kb on - strand, within Pf6N2E2_4992at 5758.780 kb on - strand, within Pf6N2E2_4992at 5758.780 kb on - strand, within Pf6N2E2_4992at 5758.780 kb on - strand, within Pf6N2E2_4992at 5758.780 kb on - strand, within Pf6N2E2_4992at 5758.780 kb on - strand, within Pf6N2E2_4992at 5758.782 kb on + strand, within Pf6N2E2_4992at 5758.783 kb on - strand, within Pf6N2E2_4992at 5758.783 kb on - strand, within Pf6N2E2_4992at 5758.783 kb on - strand, within Pf6N2E2_4992at 5758.783 kb on - strand, within Pf6N2E2_4992at 5758.783 kb on - strand, within Pf6N2E2_4992at 5758.968 kb on + strandat 5758.968 kb on + strandat 5758.969 kb on - strandat 5758.983 kb on + strandat 5758.983 kb on + strandat 5759.019 kb on - strandat 5759.019 kb on - strandat 5759.019 kb on - strandat 5759.086 kb on + strandat 5759.086 kb on + strandat 5759.086 kb on + strandat 5759.086 kb on + strandat 5759.086 kb on + strandat 5759.086 kb on + strandat 5759.086 kb on + strandat 5759.086 kb on + strandat 5759.086 kb on + strandat 5759.086 kb on + strandat 5759.088 kb on + strandat 5759.088 kb on + strandat 5759.088 kb on + strandat 5759.088 kb on + strandat 5759.088 kb on + strandat 5759.088 kb on + strandat 5759.502 kb on + strand, within Pf6N2E2_4993at 5759.502 kb on + strand, within Pf6N2E2_4993at 5759.829 kb on + strand, within Pf6N2E2_4993at 5759.889 kb on + strand, within Pf6N2E2_4993

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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5,757,723 - Pf6N2E2_4991 0.64 -0.4
5,757,723 - Pf6N2E2_4991 0.64 -1.9
5,757,875 + Pf6N2E2_4991 0.76 -1.1
5,757,875 + Pf6N2E2_4991 0.76 -1.1
5,757,876 - Pf6N2E2_4991 0.76 -3.0
5,757,876 - Pf6N2E2_4991 0.76 -0.8
5,757,876 - Pf6N2E2_4991 0.76 -3.7
5,757,876 - Pf6N2E2_4991 0.76 -1.4
5,757,876 - Pf6N2E2_4991 0.76 -0.8
5,757,962 + Pf6N2E2_4991 0.82 -1.0
5,757,963 - Pf6N2E2_4991 0.82 -1.2
5,757,963 - Pf6N2E2_4991 0.82 -1.2
5,757,963 - Pf6N2E2_4991 0.82 -0.6
5,758,194 + -0.9
5,758,195 - +0.1
5,758,195 - +0.8
5,758,198 + -2.5
5,758,198 + -4.2
5,758,198 + -1.2
5,758,198 + -1.4
5,758,198 + -2.3
5,758,199 - -2.0
5,758,199 - -1.0
5,758,199 - -2.1
5,758,199 - -0.5
5,758,199 - -3.4
5,758,199 - -0.9
5,758,199 - -1.4
5,758,199 - -3.7
5,758,199 - -1.4
5,758,199 - -1.0
5,758,216 + -0.9
5,758,216 + -1.5
5,758,217 - +0.7
5,758,217 - -0.6
5,758,217 - +0.5
5,758,352 + Pf6N2E2_4992 0.15 -1.0
5,758,352 + Pf6N2E2_4992 0.15 -2.8
5,758,352 + Pf6N2E2_4992 0.15 -1.2
5,758,353 - Pf6N2E2_4992 0.15 -0.5
5,758,353 - Pf6N2E2_4992 0.15 +0.3
5,758,353 - Pf6N2E2_4992 0.15 -0.2
5,758,689 + Pf6N2E2_4992 0.64 -0.5
5,758,690 - Pf6N2E2_4992 0.64 +0.4
5,758,692 + Pf6N2E2_4992 0.65 -0.6
5,758,692 + Pf6N2E2_4992 0.65 +0.0
5,758,692 + Pf6N2E2_4992 0.65 -0.6
5,758,692 + Pf6N2E2_4992 0.65 -1.8
5,758,692 + Pf6N2E2_4992 0.65 -0.5
5,758,692 + Pf6N2E2_4992 0.65 -0.9
5,758,692 + Pf6N2E2_4992 0.65 +0.3
5,758,692 + Pf6N2E2_4992 0.65 -1.7
5,758,692 + Pf6N2E2_4992 0.65 -1.0
5,758,693 - Pf6N2E2_4992 0.65 -0.5
5,758,693 - Pf6N2E2_4992 0.65 +0.5
5,758,693 - Pf6N2E2_4992 0.65 +0.4
5,758,693 - Pf6N2E2_4992 0.65 -1.0
5,758,693 - Pf6N2E2_4992 0.65 +0.3
5,758,693 - Pf6N2E2_4992 0.65 -0.2
5,758,693 - Pf6N2E2_4992 0.65 +0.5
5,758,693 - Pf6N2E2_4992 0.65 -0.3
5,758,693 - Pf6N2E2_4992 0.65 +0.4
5,758,693 - Pf6N2E2_4992 0.65 +0.2
5,758,693 - Pf6N2E2_4992 0.65 -3.9
5,758,693 - Pf6N2E2_4992 0.65 -0.5
5,758,693 - Pf6N2E2_4992 0.65 +1.0
5,758,696 + Pf6N2E2_4992 0.65 -0.6
5,758,696 + Pf6N2E2_4992 0.65 -1.1
5,758,696 + Pf6N2E2_4992 0.65 -0.6
5,758,696 + Pf6N2E2_4992 0.65 -0.1
5,758,696 + Pf6N2E2_4992 0.65 -2.2
5,758,696 + Pf6N2E2_4992 0.65 -4.0
5,758,696 + Pf6N2E2_4992 0.65 -1.0
5,758,696 + Pf6N2E2_4992 0.65 -0.7
5,758,696 + Pf6N2E2_4992 0.65 -0.8
5,758,696 + Pf6N2E2_4992 0.65 +0.4
5,758,696 + Pf6N2E2_4992 0.65 -1.7
5,758,696 + Pf6N2E2_4992 0.65 -3.5
5,758,696 + Pf6N2E2_4992 0.65 +0.7
5,758,696 + Pf6N2E2_4992 0.65 -0.9
5,758,696 + Pf6N2E2_4992 0.65 -0.2
5,758,696 + Pf6N2E2_4992 0.65 -1.2
5,758,696 + Pf6N2E2_4992 0.65 -2.3
5,758,696 + Pf6N2E2_4992 0.65 -1.2
5,758,697 - Pf6N2E2_4992 0.65 -0.1
5,758,697 - Pf6N2E2_4992 0.65 -1.1
5,758,697 - Pf6N2E2_4992 0.65 +0.2
5,758,697 - Pf6N2E2_4992 0.65 -0.3
5,758,697 - Pf6N2E2_4992 0.65 -0.2
5,758,697 - Pf6N2E2_4992 0.65 -0.7
5,758,697 - Pf6N2E2_4992 0.65 +0.0
5,758,697 - Pf6N2E2_4992 0.65 -0.1
5,758,697 - Pf6N2E2_4992 0.65 +0.9
5,758,697 - Pf6N2E2_4992 0.65 +0.1
5,758,697 - Pf6N2E2_4992 0.65 -0.0
5,758,697 - Pf6N2E2_4992 0.65 -0.5
5,758,697 - Pf6N2E2_4992 0.65 -1.3
5,758,697 - Pf6N2E2_4992 0.65 +0.1
5,758,697 - Pf6N2E2_4992 0.65 -0.5
5,758,698 + Pf6N2E2_4992 0.66 -1.3
5,758,698 + Pf6N2E2_4992 0.66 -3.6
5,758,698 + Pf6N2E2_4992 0.66 -1.2
5,758,698 + Pf6N2E2_4992 0.66 -2.1
5,758,698 + Pf6N2E2_4992 0.66 -1.6
5,758,698 + Pf6N2E2_4992 0.66 +0.1
5,758,698 + Pf6N2E2_4992 0.66 -0.4
5,758,698 + Pf6N2E2_4992 0.66 -1.4
5,758,698 + Pf6N2E2_4992 0.66 -0.8
5,758,698 + Pf6N2E2_4992 0.66 -1.0
5,758,698 + Pf6N2E2_4992 0.66 -1.6
5,758,698 + Pf6N2E2_4992 0.66 -0.3
5,758,698 + Pf6N2E2_4992 0.66 -0.8
5,758,698 + Pf6N2E2_4992 0.66 -1.4
5,758,698 + Pf6N2E2_4992 0.66 -1.1
5,758,698 + Pf6N2E2_4992 0.66 -0.4
5,758,698 + Pf6N2E2_4992 0.66 -0.3
5,758,698 + Pf6N2E2_4992 0.66 +0.1
5,758,698 + Pf6N2E2_4992 0.66 -1.7
5,758,698 + Pf6N2E2_4992 0.66 -1.1
5,758,698 + Pf6N2E2_4992 0.66 +0.0
5,758,699 - Pf6N2E2_4992 0.66 -1.0
5,758,699 - Pf6N2E2_4992 0.66 +0.2
5,758,699 - Pf6N2E2_4992 0.66 -0.0
5,758,699 - Pf6N2E2_4992 0.66 -0.0
5,758,699 - Pf6N2E2_4992 0.66 +0.1
5,758,699 - Pf6N2E2_4992 0.66 -0.5
5,758,699 - Pf6N2E2_4992 0.66 +0.4
5,758,699 - Pf6N2E2_4992 0.66 -0.4
5,758,699 - Pf6N2E2_4992 0.66 +0.8
5,758,699 - Pf6N2E2_4992 0.66 -1.7
5,758,699 - Pf6N2E2_4992 0.66 -0.1
5,758,699 - Pf6N2E2_4992 0.66 +0.4
5,758,699 - Pf6N2E2_4992 0.66 -0.1
5,758,699 - Pf6N2E2_4992 0.66 +0.3
5,758,699 - Pf6N2E2_4992 0.66 +0.7
5,758,699 - Pf6N2E2_4992 0.66 +0.2
5,758,699 - Pf6N2E2_4992 0.66 -0.8
5,758,699 - Pf6N2E2_4992 0.66 -0.6
5,758,699 - Pf6N2E2_4992 0.66 -0.5
5,758,699 - Pf6N2E2_4992 0.66 -1.0
5,758,699 - Pf6N2E2_4992 0.66 +0.1
5,758,699 - Pf6N2E2_4992 0.66 -1.5
5,758,699 - Pf6N2E2_4992 0.66 -0.5
5,758,699 - Pf6N2E2_4992 0.66 +1.4
5,758,699 - Pf6N2E2_4992 0.66 +1.2
5,758,699 - Pf6N2E2_4992 0.66 -0.9
5,758,699 - Pf6N2E2_4992 0.66 -1.0
5,758,699 - Pf6N2E2_4992 0.66 -0.5
5,758,699 - Pf6N2E2_4992 0.66 -2.1
5,758,730 - Pf6N2E2_4992 0.70 -0.3
5,758,730 - Pf6N2E2_4992 0.70 +0.3
5,758,779 + Pf6N2E2_4992 0.78 -2.2
5,758,779 + Pf6N2E2_4992 0.78 -1.6
5,758,779 + Pf6N2E2_4992 0.78 +0.4
5,758,779 + Pf6N2E2_4992 0.78 -0.7
5,758,779 + Pf6N2E2_4992 0.78 -0.6
5,758,779 + Pf6N2E2_4992 0.78 -1.7
5,758,779 + Pf6N2E2_4992 0.78 -0.9
5,758,780 - Pf6N2E2_4992 0.78 -0.6
5,758,780 - Pf6N2E2_4992 0.78 +0.4
5,758,780 - Pf6N2E2_4992 0.78 -1.2
5,758,780 - Pf6N2E2_4992 0.78 -1.3
5,758,780 - Pf6N2E2_4992 0.78 -1.2
5,758,780 - Pf6N2E2_4992 0.78 -1.4
5,758,780 - Pf6N2E2_4992 0.78 -0.9
5,758,780 - Pf6N2E2_4992 0.78 +1.0
5,758,780 - Pf6N2E2_4992 0.78 -1.1
5,758,782 + Pf6N2E2_4992 0.78 -1.9
5,758,783 - Pf6N2E2_4992 0.78 -0.4
5,758,783 - Pf6N2E2_4992 0.78 -0.6
5,758,783 - Pf6N2E2_4992 0.78 -1.9
5,758,783 - Pf6N2E2_4992 0.78 +0.3
5,758,783 - Pf6N2E2_4992 0.78 -0.4
5,758,968 + -0.6
5,758,968 + -1.4
5,758,969 - -2.2
5,758,983 + -2.2
5,758,983 + +0.0
5,759,019 - -4.2
5,759,019 - -1.0
5,759,019 - -2.3
5,759,086 + +0.5
5,759,086 + -0.2
5,759,086 + +0.1
5,759,086 + -0.4
5,759,086 + +1.6
5,759,086 + +0.4
5,759,086 + +1.4
5,759,086 + +1.0
5,759,086 + -0.9
5,759,086 + +1.4
5,759,088 + -0.3
5,759,088 + -0.2
5,759,088 + +0.4
5,759,088 + +0.6
5,759,088 + +0.8
5,759,088 + +0.4
5,759,502 + Pf6N2E2_4993 0.28 -3.9
5,759,502 + Pf6N2E2_4993 0.28 -3.0
5,759,829 + Pf6N2E2_4993 0.54 -0.8
5,759,889 + Pf6N2E2_4993 0.59 +0.3

Or see this region's nucleotide sequence