Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_447

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_446 and Pf6N2E2_447 are separated by 174 nucleotidesPf6N2E2_447 and Pf6N2E2_448 are separated by 124 nucleotides Pf6N2E2_446 - Glutathione reductase (EC 1.8.1.7), at 508,167 to 509,525 _446 Pf6N2E2_447 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 509,700 to 510,263 _447 Pf6N2E2_448 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 510,388 to 511,950 _448 Position (kb) 509 510 511Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.750 kb on + strand, within Pf6N2E2_446at 508.751 kb on - strand, within Pf6N2E2_446at 508.751 kb on - strand, within Pf6N2E2_446at 508.751 kb on - strand, within Pf6N2E2_446at 508.751 kb on - strand, within Pf6N2E2_446at 508.751 kb on - strand, within Pf6N2E2_446at 508.751 kb on - strand, within Pf6N2E2_446at 508.751 kb on - strand, within Pf6N2E2_446at 508.938 kb on + strand, within Pf6N2E2_446at 508.938 kb on + strand, within Pf6N2E2_446at 508.938 kb on + strand, within Pf6N2E2_446at 508.939 kb on - strand, within Pf6N2E2_446at 509.034 kb on + strand, within Pf6N2E2_446at 509.375 kb on + strand, within Pf6N2E2_446at 509.375 kb on + strand, within Pf6N2E2_446at 509.507 kb on + strandat 509.540 kb on + strandat 509.540 kb on + strandat 509.540 kb on + strandat 509.540 kb on + strandat 509.540 kb on + strandat 509.540 kb on + strandat 509.540 kb on + strandat 509.540 kb on + strandat 509.541 kb on - strandat 509.541 kb on - strandat 509.541 kb on - strandat 509.541 kb on - strandat 509.580 kb on - strandat 509.583 kb on + strandat 509.584 kb on - strandat 509.656 kb on + strandat 509.656 kb on + strandat 509.656 kb on + strandat 509.706 kb on - strandat 509.706 kb on - strandat 509.706 kb on - strandat 509.724 kb on - strandat 509.814 kb on + strand, within Pf6N2E2_447at 509.814 kb on + strand, within Pf6N2E2_447at 509.904 kb on + strand, within Pf6N2E2_447at 509.905 kb on - strand, within Pf6N2E2_447at 509.905 kb on - strand, within Pf6N2E2_447at 509.979 kb on + strand, within Pf6N2E2_447at 509.980 kb on - strand, within Pf6N2E2_447at 509.980 kb on - strand, within Pf6N2E2_447at 509.980 kb on - strand, within Pf6N2E2_447at 510.169 kb on - strand, within Pf6N2E2_447at 510.169 kb on - strand, within Pf6N2E2_447at 510.169 kb on - strand, within Pf6N2E2_447at 510.261 kb on + strandat 510.261 kb on + strandat 510.262 kb on - strandat 510.262 kb on - strandat 510.262 kb on - strandat 510.262 kb on - strandat 510.262 kb on - strandat 510.262 kb on - strandat 510.262 kb on - strandat 510.298 kb on + strandat 510.298 kb on + strandat 510.298 kb on + strandat 510.298 kb on + strandat 510.299 kb on - strandat 510.299 kb on - strandat 510.299 kb on - strandat 510.299 kb on - strandat 510.299 kb on - strandat 510.299 kb on - strandat 510.299 kb on - strandat 510.387 kb on + strandat 510.388 kb on - strandat 510.388 kb on - strandat 510.405 kb on + strandat 510.405 kb on + strandat 510.424 kb on + strandat 510.504 kb on - strandat 510.538 kb on - strandat 510.538 kb on - strandat 510.538 kb on - strandat 510.538 kb on - strandat 510.754 kb on + strand, within Pf6N2E2_448at 510.754 kb on + strand, within Pf6N2E2_448at 510.755 kb on - strand, within Pf6N2E2_448at 510.755 kb on - strand, within Pf6N2E2_448at 510.755 kb on - strand, within Pf6N2E2_448at 510.907 kb on + strand, within Pf6N2E2_448at 510.908 kb on - strand, within Pf6N2E2_448at 511.072 kb on + strand, within Pf6N2E2_448at 511.072 kb on + strand, within Pf6N2E2_448at 511.072 kb on + strand, within Pf6N2E2_448at 511.073 kb on - strand, within Pf6N2E2_448at 511.083 kb on + strand, within Pf6N2E2_448at 511.222 kb on + strand, within Pf6N2E2_448

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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508,750 + Pf6N2E2_446 0.43 +0.7
508,750 + Pf6N2E2_446 0.43 -0.3
508,750 + Pf6N2E2_446 0.43 +2.3
508,750 + Pf6N2E2_446 0.43 -0.1
508,750 + Pf6N2E2_446 0.43 -0.9
508,750 + Pf6N2E2_446 0.43 -0.0
508,750 + Pf6N2E2_446 0.43 -0.4
508,750 + Pf6N2E2_446 0.43 +0.3
508,750 + Pf6N2E2_446 0.43 -0.3
508,750 + Pf6N2E2_446 0.43 +0.5
508,750 + Pf6N2E2_446 0.43 -0.0
508,751 - Pf6N2E2_446 0.43 -0.6
508,751 - Pf6N2E2_446 0.43 +1.2
508,751 - Pf6N2E2_446 0.43 +0.9
508,751 - Pf6N2E2_446 0.43 -2.2
508,751 - Pf6N2E2_446 0.43 -0.2
508,751 - Pf6N2E2_446 0.43 -1.3
508,751 - Pf6N2E2_446 0.43 -1.4
508,938 + Pf6N2E2_446 0.57 +0.6
508,938 + Pf6N2E2_446 0.57 -0.2
508,938 + Pf6N2E2_446 0.57 +0.3
508,939 - Pf6N2E2_446 0.57 -1.4
509,034 + Pf6N2E2_446 0.64 +0.5
509,375 + Pf6N2E2_446 0.89 -0.1
509,375 + Pf6N2E2_446 0.89 -0.5
509,507 + +0.3
509,540 + +0.5
509,540 + -0.3
509,540 + +1.1
509,540 + +0.2
509,540 + -0.3
509,540 + -1.1
509,540 + +0.2
509,540 + +0.3
509,541 - +1.8
509,541 - -1.1
509,541 - +0.1
509,541 - -1.9
509,580 - +0.7
509,583 + +0.4
509,584 - +1.3
509,656 + -2.3
509,656 + -1.1
509,656 + -0.9
509,706 - +0.4
509,706 - -1.1
509,706 - +0.0
509,724 - -0.6
509,814 + Pf6N2E2_447 0.20 -0.6
509,814 + Pf6N2E2_447 0.20 -0.9
509,904 + Pf6N2E2_447 0.36 -0.5
509,905 - Pf6N2E2_447 0.36 -2.9
509,905 - Pf6N2E2_447 0.36 -2.6
509,979 + Pf6N2E2_447 0.49 -1.1
509,980 - Pf6N2E2_447 0.50 -3.6
509,980 - Pf6N2E2_447 0.50 -1.7
509,980 - Pf6N2E2_447 0.50 -1.7
510,169 - Pf6N2E2_447 0.83 -0.8
510,169 - Pf6N2E2_447 0.83 -1.7
510,169 - Pf6N2E2_447 0.83 -1.6
510,261 + +0.1
510,261 + -1.3
510,262 - -3.2
510,262 - -1.2
510,262 - -1.1
510,262 - -1.6
510,262 - -2.8
510,262 - -2.6
510,262 - -0.5
510,298 + -0.7
510,298 + +0.2
510,298 + -0.8
510,298 + +1.0
510,299 - -0.2
510,299 - -0.2
510,299 - -1.5
510,299 - -0.3
510,299 - -1.4
510,299 - -1.0
510,299 - -1.0
510,387 + -0.3
510,388 - -0.0
510,388 - -0.1
510,405 + -0.4
510,405 + -1.4
510,424 + -0.0
510,504 - -2.6
510,538 - -2.4
510,538 - +0.7
510,538 - -0.9
510,538 - +0.8
510,754 + Pf6N2E2_448 0.23 +0.2
510,754 + Pf6N2E2_448 0.23 +0.4
510,755 - Pf6N2E2_448 0.23 -0.4
510,755 - Pf6N2E2_448 0.23 -2.4
510,755 - Pf6N2E2_448 0.23 -0.6
510,907 + Pf6N2E2_448 0.33 -1.9
510,908 - Pf6N2E2_448 0.33 +0.4
511,072 + Pf6N2E2_448 0.44 +0.3
511,072 + Pf6N2E2_448 0.44 -0.3
511,072 + Pf6N2E2_448 0.44 +0.0
511,073 - Pf6N2E2_448 0.44 +0.1
511,083 + Pf6N2E2_448 0.44 +0.3
511,222 + Pf6N2E2_448 0.53 -2.2

Or see this region's nucleotide sequence