Experiment: Choline Lysine 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_439 and Pf6N2E2_440 are separated by 30 nucleotides Pf6N2E2_440 and Pf6N2E2_441 are separated by 203 nucleotides Pf6N2E2_441 and Pf6N2E2_442 are separated by 109 nucleotides Pf6N2E2_442 and Pf6N2E2_443 are separated by 0 nucleotides Pf6N2E2_443 and Pf6N2E2_444 are separated by 126 nucleotides
Pf6N2E2_439 - FIG00958580: hypothetical protein, at 504,871 to 505,041
_439
Pf6N2E2_440 - FIG00954920: hypothetical protein, at 505,072 to 505,374
_440
Pf6N2E2_441 - FIG00958773: hypothetical protein, at 505,578 to 505,928
_441
Pf6N2E2_442 - FIG00962345: hypothetical protein, at 506,038 to 506,268
_442
Pf6N2E2_443 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 506,269 to 506,550
_443
Pf6N2E2_444 - hypothetical protein, at 506,677 to 506,892
_444
Position (kb) 505
506 Strain fitness (log2 ratio) -2
-1
0
1
2 at 504.856 kb on + strand at 504.857 kb on - strand at 505.010 kb on + strand, within Pf6N2E2_439 at 505.010 kb on + strand, within Pf6N2E2_439 at 505.010 kb on + strand, within Pf6N2E2_439 at 505.010 kb on + strand, within Pf6N2E2_439 at 505.011 kb on - strand, within Pf6N2E2_439 at 505.011 kb on - strand, within Pf6N2E2_439 at 505.022 kb on + strand, within Pf6N2E2_439 at 505.022 kb on + strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.269 kb on + strand, within Pf6N2E2_440 at 505.440 kb on + strand at 505.441 kb on - strand at 505.457 kb on - strand at 505.457 kb on - strand at 505.457 kb on - strand at 505.459 kb on + strand at 505.491 kb on - strand at 505.491 kb on - strand at 505.511 kb on + strand at 505.512 kb on - strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.692 kb on + strand, within Pf6N2E2_441 at 505.693 kb on - strand, within Pf6N2E2_441 at 505.971 kb on + strand at 505.971 kb on + strand at 505.972 kb on - strand at 505.972 kb on - strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.025 kb on - strand at 506.025 kb on - strand at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.080 kb on - strand, within Pf6N2E2_442 at 506.080 kb on - strand, within Pf6N2E2_442 at 506.223 kb on + strand, within Pf6N2E2_442 at 506.270 kb on + strand at 506.270 kb on + strand at 506.270 kb on + strand at 506.271 kb on - strand at 506.271 kb on - strand at 506.271 kb on - strand at 506.414 kb on + strand, within Pf6N2E2_443 at 506.483 kb on + strand, within Pf6N2E2_443 at 506.483 kb on + strand, within Pf6N2E2_443 at 506.484 kb on - strand, within Pf6N2E2_443 at 506.526 kb on + strand at 506.526 kb on + strand at 506.527 kb on - strand at 506.591 kb on - strand at 506.591 kb on - strand at 506.591 kb on - strand at 506.615 kb on + strand at 506.615 kb on + strand at 506.616 kb on - strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.660 kb on - strand at 506.660 kb on - strand at 506.660 kb on - strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.679 kb on - strand at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.895 kb on - strand at 506.895 kb on - strand at 506.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 20 mM remove 504,856 + +1.0 504,857 - -0.1 505,010 + Pf6N2E2_439 0.81 +0.7 505,010 + Pf6N2E2_439 0.81 +0.2 505,010 + Pf6N2E2_439 0.81 +0.9 505,010 + Pf6N2E2_439 0.81 -2.0 505,011 - Pf6N2E2_439 0.82 +0.9 505,011 - Pf6N2E2_439 0.82 +0.1 505,022 + Pf6N2E2_439 0.88 +0.2 505,022 + Pf6N2E2_439 0.88 -0.7 505,023 - Pf6N2E2_439 0.89 +1.3 505,023 - Pf6N2E2_439 0.89 -0.7 505,023 - Pf6N2E2_439 0.89 +0.8 505,023 - Pf6N2E2_439 0.89 -0.2 505,242 - Pf6N2E2_440 0.56 +0.9 505,242 - Pf6N2E2_440 0.56 -1.6 505,242 - Pf6N2E2_440 0.56 +0.2 505,242 - Pf6N2E2_440 0.56 -1.6 505,269 + Pf6N2E2_440 0.65 +0.2 505,440 + -1.0 505,441 - -0.8 505,457 - -0.5 505,457 - +0.3 505,457 - +0.3 505,459 + -0.1 505,491 - -0.1 505,491 - +0.2 505,511 + -1.2 505,512 - -0.1 505,577 + +0.3 505,577 + -0.3 505,577 + -0.5 505,577 + +0.6 505,577 + -0.3 505,692 + Pf6N2E2_441 0.32 -1.0 505,693 - Pf6N2E2_441 0.33 -1.0 505,971 + +0.7 505,971 + +0.5 505,972 - -0.4 505,972 - -0.3 506,024 + -1.8 506,024 + -0.7 506,024 + -1.7 506,024 + +0.1 506,025 - -0.1 506,025 - +0.5 506,079 + Pf6N2E2_442 0.18 +0.4 506,079 + Pf6N2E2_442 0.18 +0.7 506,079 + Pf6N2E2_442 0.18 +0.5 506,079 + Pf6N2E2_442 0.18 +0.2 506,079 + Pf6N2E2_442 0.18 +0.7 506,080 - Pf6N2E2_442 0.18 +0.0 506,080 - Pf6N2E2_442 0.18 -0.2 506,223 + Pf6N2E2_442 0.80 -0.1 506,270 + +0.3 506,270 + +0.8 506,270 + -1.2 506,271 - +0.5 506,271 - +0.8 506,271 - +1.4 506,414 + Pf6N2E2_443 0.51 -0.1 506,483 + Pf6N2E2_443 0.76 +1.1 506,483 + Pf6N2E2_443 0.76 +0.1 506,484 - Pf6N2E2_443 0.76 +0.9 506,526 + -0.3 506,526 + -0.6 506,527 - +0.6 506,591 - +0.2 506,591 - -1.1 506,591 - -0.8 506,615 + +0.6 506,615 + +0.7 506,616 - -1.5 506,659 + -1.2 506,659 + +1.8 506,659 + -2.1 506,659 + +0.3 506,659 + -0.4 506,660 - +0.0 506,660 - -0.8 506,660 - -1.7 506,662 + -0.2 506,662 + +0.1 506,662 + -0.5 506,662 + +0.6 506,679 - +0.3 506,819 + Pf6N2E2_444 0.66 +0.4 506,819 + Pf6N2E2_444 0.66 -0.2 506,819 + Pf6N2E2_444 0.66 -0.8 506,819 + Pf6N2E2_444 0.66 +0.5 506,820 - Pf6N2E2_444 0.66 -0.5 506,820 - Pf6N2E2_444 0.66 -0.4 506,820 - Pf6N2E2_444 0.66 +0.2 506,894 + -0.1 506,894 + +0.5 506,894 + -0.1 506,894 + +1.0 506,894 + -0.8 506,894 + -0.2 506,895 - -0.1 506,895 - +0.0 506,895 - +0.3
Or see this region's nucleotide sequence