Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_423

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_422 and Pf6N2E2_423 are separated by 20 nucleotidesPf6N2E2_423 and Pf6N2E2_424 are separated by 129 nucleotides Pf6N2E2_422 - Na+ driven multidrug efflux pump, at 490,565 to 491,863 _422 Pf6N2E2_423 - Putative phosphatase YfbT, at 491,884 to 492,588 _423 Pf6N2E2_424 - Decarboxylase family protein, at 492,718 to 494,091 _424 Position (kb) 491 492 493Strain fitness (log2 ratio) -2 -1 0 1at 490.904 kb on + strand, within Pf6N2E2_422at 490.904 kb on + strand, within Pf6N2E2_422at 490.905 kb on - strand, within Pf6N2E2_422at 490.945 kb on - strand, within Pf6N2E2_422at 490.945 kb on - strand, within Pf6N2E2_422at 490.945 kb on - strand, within Pf6N2E2_422at 491.241 kb on + strand, within Pf6N2E2_422at 491.241 kb on + strand, within Pf6N2E2_422at 491.242 kb on - strand, within Pf6N2E2_422at 491.312 kb on - strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.366 kb on + strand, within Pf6N2E2_422at 491.367 kb on - strand, within Pf6N2E2_422at 491.367 kb on - strand, within Pf6N2E2_422at 491.367 kb on - strand, within Pf6N2E2_422at 491.367 kb on - strandat 491.495 kb on - strand, within Pf6N2E2_422at 491.519 kb on + strand, within Pf6N2E2_422at 491.519 kb on + strand, within Pf6N2E2_422at 491.686 kb on + strand, within Pf6N2E2_422at 491.687 kb on - strand, within Pf6N2E2_422at 491.729 kb on + strand, within Pf6N2E2_422at 491.730 kb on - strand, within Pf6N2E2_422at 491.786 kb on + strandat 491.787 kb on - strandat 491.817 kb on - strandat 491.819 kb on + strandat 491.820 kb on - strandat 491.861 kb on + strandat 491.877 kb on + strandat 491.877 kb on + strandat 491.877 kb on + strandat 491.877 kb on + strandat 491.878 kb on - strandat 491.878 kb on - strandat 491.878 kb on - strandat 491.878 kb on - strandat 492.279 kb on + strand, within Pf6N2E2_423at 492.486 kb on + strand, within Pf6N2E2_423at 492.526 kb on + strandat 492.526 kb on + strandat 492.527 kb on - strandat 492.527 kb on - strandat 492.527 kb on - strandat 492.584 kb on + strandat 492.584 kb on + strandat 492.585 kb on - strandat 492.585 kb on - strandat 492.585 kb on - strandat 492.585 kb on - strandat 492.660 kb on + strandat 492.714 kb on + strandat 492.715 kb on - strandat 492.746 kb on + strandat 492.746 kb on + strandat 492.747 kb on - strandat 492.747 kb on - strandat 492.747 kb on - strandat 492.747 kb on - strandat 493.143 kb on - strand, within Pf6N2E2_424at 493.143 kb on - strand, within Pf6N2E2_424at 493.348 kb on + strand, within Pf6N2E2_424at 493.348 kb on + strand, within Pf6N2E2_424at 493.349 kb on - strand, within Pf6N2E2_424at 493.470 kb on + strand, within Pf6N2E2_424at 493.471 kb on - strand, within Pf6N2E2_424at 493.545 kb on + strand, within Pf6N2E2_424at 493.546 kb on - strand, within Pf6N2E2_424

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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490,904 + Pf6N2E2_422 0.26 -0.9
490,904 + Pf6N2E2_422 0.26 +0.6
490,905 - Pf6N2E2_422 0.26 +0.0
490,945 - Pf6N2E2_422 0.29 -0.0
490,945 - Pf6N2E2_422 0.29 -0.1
490,945 - Pf6N2E2_422 0.29 -0.5
491,241 + Pf6N2E2_422 0.52 -0.8
491,241 + Pf6N2E2_422 0.52 +1.0
491,242 - Pf6N2E2_422 0.52 -0.1
491,312 - Pf6N2E2_422 0.58 +1.3
491,366 + Pf6N2E2_422 0.62 -0.4
491,366 + Pf6N2E2_422 0.62 +0.4
491,366 + Pf6N2E2_422 0.62 -0.7
491,366 + Pf6N2E2_422 0.62 +0.2
491,366 + Pf6N2E2_422 0.62 +0.8
491,366 + Pf6N2E2_422 0.62 -0.4
491,366 + Pf6N2E2_422 0.62 -0.2
491,366 + Pf6N2E2_422 0.62 -0.1
491,366 + Pf6N2E2_422 0.62 +0.4
491,366 + Pf6N2E2_422 0.62 +0.1
491,367 - Pf6N2E2_422 0.62 -0.3
491,367 - Pf6N2E2_422 0.62 +0.7
491,367 - Pf6N2E2_422 0.62 -0.2
491,367 - +0.8
491,495 - Pf6N2E2_422 0.72 -1.7
491,519 + Pf6N2E2_422 0.73 -0.2
491,519 + Pf6N2E2_422 0.73 +0.4
491,686 + Pf6N2E2_422 0.86 -0.7
491,687 - Pf6N2E2_422 0.86 +0.7
491,729 + Pf6N2E2_422 0.90 +0.8
491,730 - Pf6N2E2_422 0.90 -0.4
491,786 + -0.5
491,787 - -0.5
491,817 - -0.9
491,819 + +0.5
491,820 - -0.8
491,861 + -1.3
491,877 + +0.9
491,877 + +0.5
491,877 + +0.3
491,877 + -0.4
491,878 - +0.6
491,878 - +0.9
491,878 - +0.1
491,878 - -1.3
492,279 + Pf6N2E2_423 0.56 -1.0
492,486 + Pf6N2E2_423 0.85 -0.9
492,526 + +0.6
492,526 + -0.3
492,527 - +0.3
492,527 - -1.1
492,527 - -0.7
492,584 + +0.4
492,584 + +0.2
492,585 - -0.2
492,585 - +0.1
492,585 - +0.6
492,585 - +0.1
492,660 + -0.3
492,714 + -0.9
492,715 - -1.0
492,746 + -0.7
492,746 + -1.6
492,747 - +0.6
492,747 - -1.9
492,747 - -0.7
492,747 - +0.1
493,143 - Pf6N2E2_424 0.31 -0.7
493,143 - Pf6N2E2_424 0.31 -0.1
493,348 + Pf6N2E2_424 0.46 -0.2
493,348 + Pf6N2E2_424 0.46 +0.6
493,349 - Pf6N2E2_424 0.46 -1.2
493,470 + Pf6N2E2_424 0.55 +0.4
493,471 - Pf6N2E2_424 0.55 +0.4
493,545 + Pf6N2E2_424 0.60 +0.7
493,546 - Pf6N2E2_424 0.60 -0.5

Or see this region's nucleotide sequence