Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4130

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4128 and Pf6N2E2_4129 are separated by 9 nucleotidesPf6N2E2_4129 and Pf6N2E2_4130 are separated by 13 nucleotidesPf6N2E2_4130 and Pf6N2E2_4131 are separated by 115 nucleotides Pf6N2E2_4128 - hypothetical protein, at 4,807,293 to 4,807,577 _4128 Pf6N2E2_4129 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 4,807,587 to 4,808,501 _4129 Pf6N2E2_4130 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 4,808,515 to 4,809,336 _4130 Pf6N2E2_4131 - Sulfate permease, at 4,809,452 to 4,811,020 _4131 Position (kb) 4808 4809 4810Strain fitness (log2 ratio) -2 -1 0 1at 4807.518 kb on + strand, within Pf6N2E2_4128at 4807.518 kb on + strand, within Pf6N2E2_4128at 4807.565 kb on + strandat 4808.524 kb on + strandat 4809.385 kb on - strandat 4809.389 kb on + strandat 4809.389 kb on + strandat 4809.453 kb on + strandat 4809.601 kb on - strandat 4809.675 kb on + strand, within Pf6N2E2_4131at 4809.675 kb on + strand, within Pf6N2E2_4131at 4809.676 kb on - strand, within Pf6N2E2_4131at 4809.676 kb on - strand, within Pf6N2E2_4131at 4809.775 kb on - strand, within Pf6N2E2_4131at 4809.804 kb on + strand, within Pf6N2E2_4131at 4809.804 kb on + strand, within Pf6N2E2_4131at 4809.804 kb on + strand, within Pf6N2E2_4131at 4809.804 kb on + strand, within Pf6N2E2_4131at 4809.804 kb on + strand, within Pf6N2E2_4131at 4809.804 kb on + strand, within Pf6N2E2_4131at 4809.804 kb on + strand, within Pf6N2E2_4131at 4809.804 kb on + strand, within Pf6N2E2_4131at 4809.804 kb on + strand, within Pf6N2E2_4131at 4809.805 kb on - strand, within Pf6N2E2_4131at 4809.805 kb on - strand, within Pf6N2E2_4131at 4809.805 kb on - strand, within Pf6N2E2_4131at 4809.805 kb on - strand, within Pf6N2E2_4131at 4809.805 kb on - strand, within Pf6N2E2_4131at 4809.805 kb on - strand, within Pf6N2E2_4131at 4809.805 kb on - strand, within Pf6N2E2_4131at 4809.805 kb on - strand, within Pf6N2E2_4131at 4809.805 kb on - strand, within Pf6N2E2_4131at 4809.857 kb on + strand, within Pf6N2E2_4131at 4809.885 kb on + strand, within Pf6N2E2_4131at 4809.886 kb on - strand, within Pf6N2E2_4131at 4810.056 kb on + strand, within Pf6N2E2_4131at 4810.056 kb on + strand, within Pf6N2E2_4131at 4810.056 kb on + strand, within Pf6N2E2_4131at 4810.057 kb on - strand, within Pf6N2E2_4131

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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4,807,518 + Pf6N2E2_4128 0.79 +1.3
4,807,518 + Pf6N2E2_4128 0.79 +0.4
4,807,565 + +0.1
4,808,524 + -0.1
4,809,385 - -0.1
4,809,389 + -0.0
4,809,389 + -0.3
4,809,453 + +0.7
4,809,601 - -0.3
4,809,675 + Pf6N2E2_4131 0.14 +1.3
4,809,675 + Pf6N2E2_4131 0.14 -1.1
4,809,676 - Pf6N2E2_4131 0.14 -1.5
4,809,676 - Pf6N2E2_4131 0.14 +1.3
4,809,775 - Pf6N2E2_4131 0.21 -1.2
4,809,804 + Pf6N2E2_4131 0.22 +0.9
4,809,804 + Pf6N2E2_4131 0.22 +1.0
4,809,804 + Pf6N2E2_4131 0.22 -0.5
4,809,804 + Pf6N2E2_4131 0.22 +0.9
4,809,804 + Pf6N2E2_4131 0.22 -1.0
4,809,804 + Pf6N2E2_4131 0.22 -0.1
4,809,804 + Pf6N2E2_4131 0.22 +0.4
4,809,804 + Pf6N2E2_4131 0.22 -1.8
4,809,804 + Pf6N2E2_4131 0.22 +0.0
4,809,805 - Pf6N2E2_4131 0.22 -0.5
4,809,805 - Pf6N2E2_4131 0.22 +0.6
4,809,805 - Pf6N2E2_4131 0.22 +0.3
4,809,805 - Pf6N2E2_4131 0.22 -0.6
4,809,805 - Pf6N2E2_4131 0.22 -2.5
4,809,805 - Pf6N2E2_4131 0.22 +0.2
4,809,805 - Pf6N2E2_4131 0.22 +0.4
4,809,805 - Pf6N2E2_4131 0.22 +1.6
4,809,805 - Pf6N2E2_4131 0.22 -0.0
4,809,857 + Pf6N2E2_4131 0.26 +1.4
4,809,885 + Pf6N2E2_4131 0.28 +0.9
4,809,886 - Pf6N2E2_4131 0.28 +1.4
4,810,056 + Pf6N2E2_4131 0.38 -0.2
4,810,056 + Pf6N2E2_4131 0.38 +0.1
4,810,056 + Pf6N2E2_4131 0.38 -0.2
4,810,057 - Pf6N2E2_4131 0.39 -0.4

Or see this region's nucleotide sequence