Experiment: Choline Lysine 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_371 and Pf6N2E2_372 are separated by 225 nucleotides Pf6N2E2_372 and Pf6N2E2_373 are separated by 288 nucleotides
Pf6N2E2_371 - Histone acetyltransferase HPA2 and related acetyltransferases, at 438,498 to 439,355
_371
Pf6N2E2_372 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 439,581 to 440,507
_372
Pf6N2E2_373 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 440,796 to 442,088
_373
Position (kb) 439
440
441 Strain fitness (log2 ratio) -2
-1
0
1 at 438.685 kb on - strand, within Pf6N2E2_371 at 438.984 kb on - strand, within Pf6N2E2_371 at 439.015 kb on + strand, within Pf6N2E2_371 at 439.015 kb on + strand, within Pf6N2E2_371 at 439.016 kb on - strand, within Pf6N2E2_371 at 439.016 kb on - strand, within Pf6N2E2_371 at 439.016 kb on - strand, within Pf6N2E2_371 at 439.117 kb on + strand, within Pf6N2E2_371 at 439.118 kb on - strand, within Pf6N2E2_371 at 439.325 kb on - strand at 439.330 kb on + strand at 439.330 kb on + strand at 439.330 kb on + strand at 439.330 kb on + strand at 439.330 kb on + strand at 439.331 kb on - strand at 439.331 kb on - strand at 439.331 kb on - strand at 439.373 kb on + strand at 439.415 kb on + strand at 439.416 kb on - strand at 439.416 kb on - strand at 439.526 kb on + strand at 439.526 kb on + strand at 439.526 kb on + strand at 439.527 kb on - strand at 439.527 kb on - strand at 439.585 kb on + strand at 439.585 kb on + strand at 439.586 kb on - strand at 439.589 kb on + strand at 439.590 kb on - strand at 439.710 kb on + strand, within Pf6N2E2_372 at 439.710 kb on + strand, within Pf6N2E2_372 at 439.710 kb on + strand, within Pf6N2E2_372 at 439.938 kb on + strand, within Pf6N2E2_372 at 439.938 kb on + strand, within Pf6N2E2_372 at 439.938 kb on + strand, within Pf6N2E2_372 at 439.939 kb on - strand, within Pf6N2E2_372 at 439.939 kb on - strand, within Pf6N2E2_372 at 439.939 kb on - strand, within Pf6N2E2_372 at 439.939 kb on - strand, within Pf6N2E2_372 at 440.067 kb on + strand, within Pf6N2E2_372 at 440.215 kb on + strand, within Pf6N2E2_372 at 440.274 kb on - strand, within Pf6N2E2_372 at 440.384 kb on - strand, within Pf6N2E2_372 at 440.384 kb on - strand, within Pf6N2E2_372 at 440.384 kb on - strand, within Pf6N2E2_372 at 440.384 kb on - strand, within Pf6N2E2_372 at 440.492 kb on + strand at 440.494 kb on + strand at 440.494 kb on + strand at 440.495 kb on - strand at 440.495 kb on - strand at 440.495 kb on - strand at 440.540 kb on + strand at 440.586 kb on - strand at 440.676 kb on + strand at 440.677 kb on - strand at 440.912 kb on - strand at 441.063 kb on + strand, within Pf6N2E2_373 at 441.114 kb on + strand, within Pf6N2E2_373 at 441.115 kb on - strand, within Pf6N2E2_373 at 441.117 kb on - strand, within Pf6N2E2_373 at 441.117 kb on - strand, within Pf6N2E2_373 at 441.270 kb on + strand, within Pf6N2E2_373 at 441.271 kb on - strand, within Pf6N2E2_373 at 441.330 kb on + strand, within Pf6N2E2_373 at 441.330 kb on + strand, within Pf6N2E2_373
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 20 mM remove 438,685 - Pf6N2E2_371 0.22 -0.4 438,984 - Pf6N2E2_371 0.57 -0.2 439,015 + Pf6N2E2_371 0.60 -2.3 439,015 + Pf6N2E2_371 0.60 +0.7 439,016 - Pf6N2E2_371 0.60 -0.1 439,016 - Pf6N2E2_371 0.60 -1.1 439,016 - Pf6N2E2_371 0.60 +0.2 439,117 + Pf6N2E2_371 0.72 -0.3 439,118 - Pf6N2E2_371 0.72 -0.3 439,325 - +0.1 439,330 + +0.1 439,330 + +0.6 439,330 + -2.0 439,330 + -0.9 439,330 + +0.2 439,331 - +0.1 439,331 - -1.3 439,331 - -0.2 439,373 + +0.4 439,415 + -0.3 439,416 - -0.4 439,416 - +0.7 439,526 + -0.7 439,526 + -0.6 439,526 + -0.0 439,527 - +0.7 439,527 - -0.3 439,585 + +0.6 439,585 + +0.9 439,586 - +1.2 439,589 + -0.9 439,590 - +0.4 439,710 + Pf6N2E2_372 0.14 -0.6 439,710 + Pf6N2E2_372 0.14 +0.0 439,710 + Pf6N2E2_372 0.14 +0.4 439,938 + Pf6N2E2_372 0.39 -0.4 439,938 + Pf6N2E2_372 0.39 +1.1 439,938 + Pf6N2E2_372 0.39 +0.3 439,939 - Pf6N2E2_372 0.39 -0.2 439,939 - Pf6N2E2_372 0.39 +0.0 439,939 - Pf6N2E2_372 0.39 -0.1 439,939 - Pf6N2E2_372 0.39 -0.0 440,067 + Pf6N2E2_372 0.52 +1.1 440,215 + Pf6N2E2_372 0.68 -0.7 440,274 - Pf6N2E2_372 0.75 -0.2 440,384 - Pf6N2E2_372 0.87 +0.2 440,384 - Pf6N2E2_372 0.87 +0.7 440,384 - Pf6N2E2_372 0.87 -0.2 440,384 - Pf6N2E2_372 0.87 -1.0 440,492 + -0.7 440,494 + -0.3 440,494 + +1.0 440,495 - +1.2 440,495 - +1.2 440,495 - -1.7 440,540 + +0.6 440,586 - +0.0 440,676 + +0.8 440,677 - +0.4 440,912 - +0.6 441,063 + Pf6N2E2_373 0.21 +1.0 441,114 + Pf6N2E2_373 0.25 -0.6 441,115 - Pf6N2E2_373 0.25 +0.7 441,117 - Pf6N2E2_373 0.25 -0.1 441,117 - Pf6N2E2_373 0.25 -0.3 441,270 + Pf6N2E2_373 0.37 +0.5 441,271 - Pf6N2E2_373 0.37 -0.4 441,330 + Pf6N2E2_373 0.41 -1.0 441,330 + Pf6N2E2_373 0.41 -0.1
Or see this region's nucleotide sequence