Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3285

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3283 and Pf6N2E2_3284 are separated by 56 nucleotidesPf6N2E2_3284 and Pf6N2E2_3285 are separated by 183 nucleotidesPf6N2E2_3285 and Pf6N2E2_3286 overlap by 4 nucleotides Pf6N2E2_3283 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 3,789,546 to 3,791,003 _3283 Pf6N2E2_3284 - Septum formation protein Maf, at 3,791,060 to 3,791,656 _3284 Pf6N2E2_3285 - Rod shape-determining protein MreD, at 3,791,840 to 3,792,328 _3285 Pf6N2E2_3286 - Rod shape-determining protein MreC, at 3,792,325 to 3,793,446 _3286 Position (kb) 3791 3792 3793Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3790.878 kb on - strandat 3790.880 kb on - strandat 3790.880 kb on - strandat 3790.880 kb on - strandat 3790.880 kb on - strandat 3790.884 kb on - strandat 3790.884 kb on - strandat 3790.884 kb on - strandat 3791.091 kb on - strandat 3791.091 kb on - strandat 3791.109 kb on - strandat 3791.109 kb on - strandat 3791.109 kb on - strandat 3791.109 kb on - strandat 3791.152 kb on - strand, within Pf6N2E2_3284at 3791.152 kb on - strand, within Pf6N2E2_3284at 3791.152 kb on - strand, within Pf6N2E2_3284at 3791.198 kb on - strand, within Pf6N2E2_3284at 3791.198 kb on - strand, within Pf6N2E2_3284at 3791.198 kb on - strand, within Pf6N2E2_3284at 3791.342 kb on + strand, within Pf6N2E2_3284at 3791.343 kb on - strand, within Pf6N2E2_3284at 3791.343 kb on - strand, within Pf6N2E2_3284at 3791.343 kb on - strand, within Pf6N2E2_3284at 3791.343 kb on - strand, within Pf6N2E2_3284at 3791.343 kb on - strand, within Pf6N2E2_3284at 3791.527 kb on - strand, within Pf6N2E2_3284at 3791.644 kb on - strandat 3791.644 kb on - strandat 3791.644 kb on - strandat 3791.755 kb on - strandat 3791.804 kb on + strandat 3791.804 kb on + strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.805 kb on - strandat 3791.823 kb on + strandat 3791.824 kb on - strandat 3791.824 kb on - strandat 3791.828 kb on - strandat 3792.032 kb on - strand, within Pf6N2E2_3285at 3792.032 kb on - strand, within Pf6N2E2_3285at 3792.032 kb on - strand, within Pf6N2E2_3285at 3792.032 kb on - strand, within Pf6N2E2_3285at 3792.032 kb on - strand, within Pf6N2E2_3285at 3792.032 kb on - strand, within Pf6N2E2_3285at 3792.671 kb on - strand, within Pf6N2E2_3286

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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3,790,878 - -0.8
3,790,880 - +0.2
3,790,880 - +1.6
3,790,880 - +1.0
3,790,880 - +0.5
3,790,884 - +0.9
3,790,884 - +1.2
3,790,884 - -0.3
3,791,091 - -0.1
3,791,091 - +0.1
3,791,109 - -0.7
3,791,109 - +0.3
3,791,109 - -0.1
3,791,109 - +0.0
3,791,152 - Pf6N2E2_3284 0.15 -0.4
3,791,152 - Pf6N2E2_3284 0.15 +0.3
3,791,152 - Pf6N2E2_3284 0.15 -0.2
3,791,198 - Pf6N2E2_3284 0.23 -0.8
3,791,198 - Pf6N2E2_3284 0.23 -2.3
3,791,198 - Pf6N2E2_3284 0.23 -1.0
3,791,342 + Pf6N2E2_3284 0.47 +1.9
3,791,343 - Pf6N2E2_3284 0.47 -0.5
3,791,343 - Pf6N2E2_3284 0.47 -0.2
3,791,343 - Pf6N2E2_3284 0.47 +0.4
3,791,343 - Pf6N2E2_3284 0.47 -0.7
3,791,343 - Pf6N2E2_3284 0.47 -0.4
3,791,527 - Pf6N2E2_3284 0.78 -0.4
3,791,644 - -0.3
3,791,644 - +1.0
3,791,644 - -0.9
3,791,755 - -0.5
3,791,804 + +1.0
3,791,804 + +0.3
3,791,805 - -0.2
3,791,805 - -0.5
3,791,805 - -1.5
3,791,805 - -1.2
3,791,805 - -0.7
3,791,805 - -1.3
3,791,805 - -0.3
3,791,805 - -0.6
3,791,805 - +0.2
3,791,805 - -0.8
3,791,805 - -0.8
3,791,805 - -2.2
3,791,805 - -0.6
3,791,805 - -1.7
3,791,805 - -0.5
3,791,805 - -0.2
3,791,805 - -0.2
3,791,805 - -0.2
3,791,805 - -0.2
3,791,823 + +1.0
3,791,824 - -0.1
3,791,824 - -0.9
3,791,828 - -1.0
3,792,032 - Pf6N2E2_3285 0.39 -3.1
3,792,032 - Pf6N2E2_3285 0.39 -1.3
3,792,032 - Pf6N2E2_3285 0.39 -3.9
3,792,032 - Pf6N2E2_3285 0.39 -2.3
3,792,032 - Pf6N2E2_3285 0.39 -2.8
3,792,032 - Pf6N2E2_3285 0.39 -4.5
3,792,671 - Pf6N2E2_3286 0.31 -1.5

Or see this region's nucleotide sequence