Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_29

Experiment: Choline Lysine 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_27 and Pf6N2E2_28 are separated by 306 nucleotidesPf6N2E2_28 and Pf6N2E2_29 are separated by 223 nucleotidesPf6N2E2_29 and Pf6N2E2_30 are separated by 37 nucleotides Pf6N2E2_27 - Mechanosensitive ion channel, at 63,992 to 65,434 _27 Pf6N2E2_28 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 65,741 to 66,181 _28 Pf6N2E2_29 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily, at 66,405 to 66,905 _29 Pf6N2E2_30 - Antisigma transmembrane sensor FpvR, at 66,943 to 67,926 _30 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 65.686 kb on - strandat 65.709 kb on + strandat 65.709 kb on + strandat 65.715 kb on + strandat 65.716 kb on - strandat 65.762 kb on + strandat 65.763 kb on - strandat 66.062 kb on + strand, within Pf6N2E2_28at 66.063 kb on - strand, within Pf6N2E2_28at 66.063 kb on - strand, within Pf6N2E2_28at 66.208 kb on + strandat 66.209 kb on - strandat 66.248 kb on + strandat 66.248 kb on + strandat 66.248 kb on + strandat 66.248 kb on + strandat 66.249 kb on - strandat 66.249 kb on - strandat 66.296 kb on + strandat 66.296 kb on + strandat 66.296 kb on + strandat 66.297 kb on - strandat 66.297 kb on - strandat 66.297 kb on - strandat 66.302 kb on + strandat 66.302 kb on + strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.303 kb on - strandat 66.342 kb on + strandat 66.343 kb on - strandat 66.343 kb on - strandat 66.343 kb on - strandat 66.355 kb on + strandat 66.447 kb on + strandat 66.448 kb on - strandat 66.448 kb on - strandat 66.574 kb on - strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.577 kb on + strand, within Pf6N2E2_29at 66.662 kb on + strand, within Pf6N2E2_29at 66.663 kb on - strand, within Pf6N2E2_29at 66.693 kb on + strand, within Pf6N2E2_29at 66.693 kb on + strand, within Pf6N2E2_29at 66.693 kb on + strand, within Pf6N2E2_29at 66.693 kb on + strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.694 kb on - strand, within Pf6N2E2_29at 66.849 kb on + strand, within Pf6N2E2_29at 66.850 kb on - strand, within Pf6N2E2_29at 66.850 kb on - strand, within Pf6N2E2_29at 66.851 kb on + strand, within Pf6N2E2_29at 66.851 kb on + strand, within Pf6N2E2_29at 66.852 kb on - strand, within Pf6N2E2_29at 66.852 kb on - strand, within Pf6N2E2_29at 67.113 kb on + strand, within Pf6N2E2_30at 67.113 kb on + strand, within Pf6N2E2_30at 67.207 kb on + strand, within Pf6N2E2_30at 67.282 kb on + strand, within Pf6N2E2_30at 67.294 kb on + strand, within Pf6N2E2_30at 67.294 kb on + strand, within Pf6N2E2_30at 67.294 kb on + strand, within Pf6N2E2_30at 67.295 kb on - strand, within Pf6N2E2_30at 67.377 kb on + strand, within Pf6N2E2_30at 67.377 kb on + strand, within Pf6N2E2_30at 67.378 kb on - strand, within Pf6N2E2_30at 67.687 kb on - strand, within Pf6N2E2_30at 67.866 kb on + strandat 67.866 kb on + strandat 67.866 kb on + strandat 67.866 kb on + strandat 67.867 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
remove
65,686 - -0.6
65,709 + +0.5
65,709 + +0.1
65,715 + -1.4
65,716 - +0.0
65,762 + +1.9
65,763 - +0.7
66,062 + Pf6N2E2_28 0.73 +0.2
66,063 - Pf6N2E2_28 0.73 -0.8
66,063 - Pf6N2E2_28 0.73 +0.2
66,208 + -1.2
66,209 - -0.2
66,248 + +0.0
66,248 + +1.1
66,248 + -0.3
66,248 + +2.0
66,249 - +0.3
66,249 - +0.1
66,296 + -1.7
66,296 + +0.6
66,296 + +0.3
66,297 - -0.6
66,297 - -0.1
66,297 - +0.3
66,302 + +0.9
66,302 + +1.7
66,303 - -0.2
66,303 - -0.1
66,303 - +0.6
66,303 - -2.7
66,303 - -0.6
66,303 - +0.2
66,303 - +0.8
66,342 + +0.9
66,343 - -0.9
66,343 - -0.3
66,343 - -0.7
66,355 + +0.9
66,447 + +0.6
66,448 - -0.6
66,448 - -0.4
66,574 - Pf6N2E2_29 0.34 +0.3
66,577 + Pf6N2E2_29 0.34 +1.1
66,577 + Pf6N2E2_29 0.34 +0.7
66,577 + Pf6N2E2_29 0.34 +1.3
66,577 + Pf6N2E2_29 0.34 -0.7
66,577 + Pf6N2E2_29 0.34 +0.9
66,577 + Pf6N2E2_29 0.34 +0.6
66,662 + Pf6N2E2_29 0.51 +0.4
66,663 - Pf6N2E2_29 0.51 +0.5
66,693 + Pf6N2E2_29 0.57 +1.1
66,693 + Pf6N2E2_29 0.57 +1.6
66,693 + Pf6N2E2_29 0.57 +1.0
66,693 + Pf6N2E2_29 0.57 +1.0
66,694 - Pf6N2E2_29 0.58 -0.0
66,694 - Pf6N2E2_29 0.58 -0.6
66,694 - Pf6N2E2_29 0.58 -0.2
66,694 - Pf6N2E2_29 0.58 -0.0
66,694 - Pf6N2E2_29 0.58 -0.9
66,849 + Pf6N2E2_29 0.89 +1.3
66,850 - Pf6N2E2_29 0.89 +1.0
66,850 - Pf6N2E2_29 0.89 -0.8
66,851 + Pf6N2E2_29 0.89 +0.1
66,851 + Pf6N2E2_29 0.89 +0.3
66,852 - Pf6N2E2_29 0.89 +0.9
66,852 - Pf6N2E2_29 0.89 -0.1
67,113 + Pf6N2E2_30 0.17 -0.0
67,113 + Pf6N2E2_30 0.17 +0.1
67,207 + Pf6N2E2_30 0.27 +1.2
67,282 + Pf6N2E2_30 0.34 +0.9
67,294 + Pf6N2E2_30 0.36 +0.6
67,294 + Pf6N2E2_30 0.36 -0.5
67,294 + Pf6N2E2_30 0.36 -1.8
67,295 - Pf6N2E2_30 0.36 +0.8
67,377 + Pf6N2E2_30 0.44 -0.2
67,377 + Pf6N2E2_30 0.44 -0.9
67,378 - Pf6N2E2_30 0.44 +0.1
67,687 - Pf6N2E2_30 0.76 -0.2
67,866 + -0.9
67,866 + +1.3
67,866 + -0.3
67,866 + +0.9
67,867 - +1.5

Or see this region's nucleotide sequence