Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2520

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2519 and Pf6N2E2_2520 are separated by 13 nucleotidesPf6N2E2_2520 and Pf6N2E2_2521 overlap by 1 nucleotides Pf6N2E2_2519 - Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57), at 2,973,127 to 2,974,239 _2519 Pf6N2E2_2520 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 2,974,253 to 2,975,347 _2520 Pf6N2E2_2521 - Phosphoserine aminotransferase (EC 2.6.1.52), at 2,975,347 to 2,976,438 _2521 Position (kb) 2974 2975 2976Strain fitness (log2 ratio) -1 0 1at 2973.546 kb on - strand, within Pf6N2E2_2519

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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2,973,546 - Pf6N2E2_2519 0.38 +1.3

Or see this region's nucleotide sequence