Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2123

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2122 and Pf6N2E2_2123 are separated by 986 nucleotides Pf6N2E2_2122 - hypothetical protein, at 2,524,774 to 2,524,887 _2122 Pf6N2E2_2123 - hypothetical protein, at 2,525,874 to 2,527,073 _2123 Position (kb) 2525 2526 2527 2528Strain fitness (log2 ratio) -3 -2 -1 0 1at 2525.453 kb on + strandat 2525.552 kb on - strandat 2525.657 kb on - strandat 2525.922 kb on + strandat 2525.923 kb on - strandat 2526.060 kb on + strand, within Pf6N2E2_2123at 2526.061 kb on - strand, within Pf6N2E2_2123at 2526.071 kb on - strand, within Pf6N2E2_2123at 2526.359 kb on - strand, within Pf6N2E2_2123at 2526.488 kb on + strand, within Pf6N2E2_2123at 2526.489 kb on - strand, within Pf6N2E2_2123at 2526.515 kb on - strand, within Pf6N2E2_2123at 2526.777 kb on + strand, within Pf6N2E2_2123at 2526.896 kb on - strand, within Pf6N2E2_2123at 2526.998 kb on - strandat 2527.096 kb on + strandat 2527.201 kb on + strandat 2527.275 kb on + strandat 2527.276 kb on - strandat 2527.314 kb on + strandat 2527.315 kb on - strandat 2527.443 kb on + strandat 2527.559 kb on - strandat 2527.641 kb on - strandat 2528.053 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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2,525,453 + -1.0
2,525,552 - -2.9
2,525,657 - +0.0
2,525,922 + -1.4
2,525,923 - +1.5
2,526,060 + Pf6N2E2_2123 0.15 -0.9
2,526,061 - Pf6N2E2_2123 0.16 -1.9
2,526,071 - Pf6N2E2_2123 0.16 -1.0
2,526,359 - Pf6N2E2_2123 0.40 -1.5
2,526,488 + Pf6N2E2_2123 0.51 -3.1
2,526,489 - Pf6N2E2_2123 0.51 -1.3
2,526,515 - Pf6N2E2_2123 0.53 -0.3
2,526,777 + Pf6N2E2_2123 0.75 +0.5
2,526,896 - Pf6N2E2_2123 0.85 -0.8
2,526,998 - -1.7
2,527,096 + +1.3
2,527,201 + -0.2
2,527,275 + +0.7
2,527,276 - -0.1
2,527,314 + -0.1
2,527,315 - +0.6
2,527,443 + +0.6
2,527,559 - -0.5
2,527,641 - -0.3
2,528,053 + -0.7

Or see this region's nucleotide sequence