Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1809

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1808 and Pf6N2E2_1809 are separated by 185 nucleotidesPf6N2E2_1809 and Pf6N2E2_1810 are separated by 102 nucleotides Pf6N2E2_1808 - Transcriptional regulator, at 2,139,624 to 2,140,538 _1808 Pf6N2E2_1809 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 2,140,724 to 2,142,244 _1809 Pf6N2E2_1810 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 2,142,347 to 2,143,264 _1810 Position (kb) 2140 2141 2142 2143Strain fitness (log2 ratio) -2 -1 0 1at 2139.816 kb on - strand, within Pf6N2E2_1808at 2139.839 kb on + strand, within Pf6N2E2_1808at 2139.840 kb on - strand, within Pf6N2E2_1808at 2139.840 kb on - strand, within Pf6N2E2_1808at 2139.841 kb on + strand, within Pf6N2E2_1808at 2139.856 kb on + strand, within Pf6N2E2_1808at 2139.856 kb on + strand, within Pf6N2E2_1808at 2139.857 kb on - strand, within Pf6N2E2_1808at 2139.857 kb on - strand, within Pf6N2E2_1808at 2139.861 kb on - strand, within Pf6N2E2_1808at 2140.175 kb on - strand, within Pf6N2E2_1808at 2140.210 kb on + strand, within Pf6N2E2_1808at 2140.615 kb on - strandat 2140.615 kb on - strandat 2140.656 kb on + strandat 2140.817 kb on + strandat 2140.818 kb on - strandat 2140.866 kb on + strandat 2140.938 kb on - strand, within Pf6N2E2_1809at 2141.067 kb on - strand, within Pf6N2E2_1809at 2141.067 kb on - strand, within Pf6N2E2_1809at 2141.067 kb on - strand, within Pf6N2E2_1809at 2141.145 kb on - strand, within Pf6N2E2_1809at 2141.229 kb on - strand, within Pf6N2E2_1809at 2141.343 kb on - strand, within Pf6N2E2_1809at 2141.343 kb on - strand, within Pf6N2E2_1809at 2141.488 kb on + strand, within Pf6N2E2_1809at 2141.732 kb on + strand, within Pf6N2E2_1809at 2141.733 kb on - strand, within Pf6N2E2_1809at 2141.738 kb on + strand, within Pf6N2E2_1809at 2142.155 kb on + strandat 2142.167 kb on + strandat 2142.243 kb on - strandat 2142.536 kb on + strand, within Pf6N2E2_1810at 2142.536 kb on + strand, within Pf6N2E2_1810at 2142.537 kb on - strand, within Pf6N2E2_1810at 2142.537 kb on - strand, within Pf6N2E2_1810at 2142.606 kb on - strand, within Pf6N2E2_1810at 2142.953 kb on + strand, within Pf6N2E2_1810at 2143.196 kb on + strandat 2143.196 kb on + strandat 2143.196 kb on + strandat 2143.196 kb on + strandat 2143.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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2,139,816 - Pf6N2E2_1808 0.21 +0.6
2,139,839 + Pf6N2E2_1808 0.23 -1.2
2,139,840 - Pf6N2E2_1808 0.24 -1.1
2,139,840 - Pf6N2E2_1808 0.24 -1.1
2,139,841 + Pf6N2E2_1808 0.24 +0.5
2,139,856 + Pf6N2E2_1808 0.25 -0.5
2,139,856 + Pf6N2E2_1808 0.25 +1.2
2,139,857 - Pf6N2E2_1808 0.25 -2.2
2,139,857 - Pf6N2E2_1808 0.25 -0.1
2,139,861 - Pf6N2E2_1808 0.26 -2.3
2,140,175 - Pf6N2E2_1808 0.60 -0.6
2,140,210 + Pf6N2E2_1808 0.64 +0.7
2,140,615 - -1.0
2,140,615 - -1.2
2,140,656 + -0.6
2,140,817 + -0.4
2,140,818 - +1.0
2,140,866 + +1.3
2,140,938 - Pf6N2E2_1809 0.14 +0.8
2,141,067 - Pf6N2E2_1809 0.23 +0.6
2,141,067 - Pf6N2E2_1809 0.23 +0.2
2,141,067 - Pf6N2E2_1809 0.23 -0.8
2,141,145 - Pf6N2E2_1809 0.28 -0.0
2,141,229 - Pf6N2E2_1809 0.33 -0.0
2,141,343 - Pf6N2E2_1809 0.41 +0.4
2,141,343 - Pf6N2E2_1809 0.41 +0.3
2,141,488 + Pf6N2E2_1809 0.50 +0.8
2,141,732 + Pf6N2E2_1809 0.66 +0.2
2,141,733 - Pf6N2E2_1809 0.66 -0.4
2,141,738 + Pf6N2E2_1809 0.67 -0.5
2,142,155 + +0.1
2,142,167 + +0.0
2,142,243 - -1.0
2,142,536 + Pf6N2E2_1810 0.21 -0.9
2,142,536 + Pf6N2E2_1810 0.21 +0.2
2,142,537 - Pf6N2E2_1810 0.21 +0.3
2,142,537 - Pf6N2E2_1810 0.21 +0.2
2,142,606 - Pf6N2E2_1810 0.28 +0.2
2,142,953 + Pf6N2E2_1810 0.66 -0.0
2,143,196 + +0.3
2,143,196 + -1.3
2,143,196 + -1.2
2,143,196 + +0.5
2,143,197 - -1.5

Or see this region's nucleotide sequence