Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08360

Experiment: H2 N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 10mM Ammonium chloride
1,540,589	-		MMJJ_RS08350	0.86	-0.0
1,540,589	-		MMJJ_RS08350	0.86	+0.1
1,540,590	+		MMJJ_RS08350	0.86	-0.3
1,540,657	+		MMJJ_RS08350	0.90	-0.9
1,540,699	+				-1.7
1,540,713	-				-1.3
1,540,757	-				+0.2
1,540,776	-				-4.4
1,540,788	-				+1.0
1,540,788	-				+0.7
1,540,788	-				-0.9
1,540,788	-				+0.3
1,540,789	+				+0.2
1,540,790	-				+0.5
1,540,790	-				-0.1
1,540,790	-				+1.1
1,540,791	+				+0.4
1,540,791	+				-0.0
1,540,811	-				-1.3
1,540,875	-				-0.6
1,540,883	-				+0.3
1,540,926	-		MMJJ_RS09370	0.12	-1.0
1,540,927	+		MMJJ_RS09370	0.13	-0.1
1,540,927	+		MMJJ_RS09370	0.13	+0.6
1,540,988	-		MMJJ_RS09370	0.41	+1.0
1,541,142	-				+1.0
1,541,143	+				-0.6
1,541,143	+				-0.2
1,541,147	+				+0.1
1,541,147	+				+0.4
1,541,147	+				+0.8
1,541,147	+				+0.1
1,541,148	-				+0.4
1,541,165	-				+1.1
1,541,168	+				+0.1
1,541,170	+				-0.7
1,541,182	-				+1.0
1,541,182	-				+0.8
1,541,183	+				+0.8
1,541,184	-				+0.2
1,541,185	+				-2.0
1,541,185	+				+0.6
1,541,185	+				+1.4
1,541,185	+				-0.3
1,541,193	-				+0.9
1,541,193	-				+0.1
1,541,194	+				-0.4
1,541,245	-				+0.4
1,541,246	+				+0.4
1,541,255	-				+0.7
1,541,256	+				+0.6
1,541,259	+				+1.1
1,541,302	+		MMJJ_RS08355	0.18	+0.1
1,541,348	-		MMJJ_RS08355	0.33	+0.8
1,541,355	-		MMJJ_RS08355	0.35	+0.1
1,541,356	+		MMJJ_RS08355	0.36	+0.7
1,541,406	+		MMJJ_RS08355	0.51	-0.5
1,541,454	-		MMJJ_RS08355	0.67	-1.9
1,541,492	+		MMJJ_RS08355	0.79	-1.1
1,541,496	-		MMJJ_RS08355	0.80	-0.1
1,541,496	-		MMJJ_RS08355	0.80	+0.6
1,541,496	-		MMJJ_RS08355	0.80	+0.8
1,541,496	-		MMJJ_RS08355	0.80	-0.1
1,541,496	-		MMJJ_RS08355	0.80	+0.7
1,541,496	-		MMJJ_RS08355	0.80	-0.3
1,541,496	-		MMJJ_RS08355	0.80	-0.5
1,541,497	+		MMJJ_RS08355	0.80	+0.2
1,541,497	+		MMJJ_RS08355	0.80	-1.0
1,541,497	+		MMJJ_RS08355	0.80	-1.0
1,541,497	+		MMJJ_RS08355	0.80	-1.2
1,541,497	+		MMJJ_RS08355	0.80	+0.8
1,541,534	-				+0.5
1,541,535	+				-0.7
1,541,535	+				-0.7
1,541,535	+				-0.7
1,541,537	+				-1.3
1,541,537	+				+0.1
1,541,561	-				-0.2
1,541,562	+				+0.1
1,541,562	+				+0.1
1,541,575	-				-0.1
1,541,581	-				+0.9
1,541,585	+				+0.1
1,541,625	+				-1.1
1,541,651	-				+0.3
1,541,659	+				-0.5
1,541,688	-				-0.2
1,541,691	-				-0.8
1,541,692	+				-0.2
1,541,692	+				+1.4
1,541,702	-		MMJJ_RS08360	0.10	+0.9
1,541,708	-		MMJJ_RS08360	0.11	+0.4
1,541,709	+		MMJJ_RS08360	0.11	-0.1
1,541,720	-		MMJJ_RS08360	0.12	+0.5
1,541,721	+		MMJJ_RS08360	0.12	-1.6
1,541,740	-		MMJJ_RS08360	0.13	+1.5
1,541,819	+		MMJJ_RS08360	0.20	-0.6
1,541,825	-		MMJJ_RS08360	0.21	-0.1
1,541,826	+		MMJJ_RS08360	0.21	+0.7
1,541,832	+		MMJJ_RS08360	0.21	+0.7
1,541,857	-		MMJJ_RS08360	0.24	+0.4
1,541,858	+		MMJJ_RS08360	0.24	-0.5
1,541,883	-		MMJJ_RS08360	0.26	+0.3
1,541,888	-		MMJJ_RS08360	0.26	+0.9
1,541,889	+		MMJJ_RS08360	0.26	-0.3
1,541,892	-		MMJJ_RS08360	0.27	-0.1
1,541,893	+		MMJJ_RS08360	0.27	+1.1
1,541,903	-		MMJJ_RS08360	0.27	+0.9
1,541,903	-		MMJJ_RS08360	0.27	-1.3
1,541,957	-		MMJJ_RS08360	0.32	+1.2
1,541,986	-		MMJJ_RS08360	0.35	+0.6
1,541,987	+		MMJJ_RS08360	0.35	-1.0
1,541,987	+		MMJJ_RS08360	0.35	-0.1
1,541,999	+		MMJJ_RS08360	0.36	-0.1
1,542,001	+		MMJJ_RS08360	0.36	+0.2
1,542,018	+		MMJJ_RS08360	0.37	+0.9
1,542,047	+		MMJJ_RS08360	0.40	-0.3
1,542,102	-		MMJJ_RS08360	0.45	-0.1
1,542,103	+		MMJJ_RS08360	0.45	-0.8
1,542,103	+		MMJJ_RS08360	0.45	-2.0
1,542,149	-		MMJJ_RS08360	0.49	-0.3
1,542,171	-		MMJJ_RS08360	0.51	+0.8
1,542,172	+		MMJJ_RS08360	0.51	+1.0
1,542,243	-		MMJJ_RS08360	0.57	-1.5
1,542,277	+		MMJJ_RS08360	0.60	+0.9
1,542,282	+		MMJJ_RS08360	0.60	-0.5
1,542,296	+		MMJJ_RS08360	0.61	+0.0
1,542,363	+		MMJJ_RS08360	0.67	+0.2
1,542,390	-		MMJJ_RS08360	0.69	+0.1
1,542,391	+		MMJJ_RS08360	0.69	-1.4
1,542,392	-		MMJJ_RS08360	0.70	+1.1
1,542,392	-		MMJJ_RS08360	0.70	-0.5
1,542,392	-		MMJJ_RS08360	0.70	-0.4
1,542,393	+		MMJJ_RS08360	0.70	+0.9
1,542,394	-		MMJJ_RS08360	0.70	+0.3
1,542,394	-		MMJJ_RS08360	0.70	+1.2
1,542,420	-		MMJJ_RS08360	0.72	+1.1
1,542,421	+		MMJJ_RS08360	0.72	-0.3
1,542,421	+		MMJJ_RS08360	0.72	-0.1
1,542,522	-		MMJJ_RS08360	0.81	+0.2
1,542,532	-		MMJJ_RS08360	0.82	-0.2
1,542,533	+		MMJJ_RS08360	0.82	-0.2
1,542,533	+		MMJJ_RS08360	0.82	+1.0
1,542,533	+		MMJJ_RS08360	0.82	+1.5
1,542,605	-		MMJJ_RS08360	0.88	-1.0
1,542,606	+		MMJJ_RS08360	0.88	+1.1
1,542,606	+		MMJJ_RS08360	0.88	-0.2
1,542,610	+		MMJJ_RS08360	0.88	+1.2
1,542,612	-		MMJJ_RS08360	0.88	+0.3
1,542,612	-		MMJJ_RS08360	0.88	+0.8
1,542,612	-		MMJJ_RS08360	0.88	+0.2
1,542,635	-				+0.6
1,542,636	+				+1.2
1,542,640	-				-0.2
1,542,674	+				-0.2
1,542,718	-				-1.6
1,542,733	+				-1.0
1,542,737	-				+1.0
1,542,751	-				-0.3
1,542,758	+				+0.2
1,542,780	-				+1.5
1,542,781	+				+0.4
1,542,781	+				-1.8
1,542,781	+				+0.8
1,542,785	-				+0.8
1,542,877	+		MMJJ_RS08365	0.26	+0.6
1,542,877	+		MMJJ_RS08365	0.26	+0.6
1,542,877	+		MMJJ_RS08365	0.26	+0.5
1,542,879	-		MMJJ_RS08365	0.27	-2.4
1,542,879	-		MMJJ_RS08365	0.27	-0.5
1,542,879	-		MMJJ_RS08365	0.27	+0.7
1,542,880	+		MMJJ_RS08365	0.27	-0.7
1,542,880	+		MMJJ_RS08365	0.27	-0.0
1,542,884	+		MMJJ_RS08365	0.28	-1.2
1,542,897	-				+1.3
1,542,900	-		MMJJ_RS08365	0.33	+0.2
1,543,022	+		MMJJ_RS08365	0.68	+0.5
1,543,073	+		MMJJ_RS08365	0.82	+0.4
1,543,085	-		MMJJ_RS08365	0.86	+0.0
1,543,102	+				+0.1
1,543,107	+				+0.2
1,543,110	-				-2.4
1,543,110	-				-1.5
1,543,110	-				-3.0
1,543,111	+				-0.4
1,543,111	+				-1.4
1,543,111	+				-0.9
1,543,159	-				+1.0
1,543,160	+				-0.6
1,543,171	-				+0.6
1,543,171	-				+0.8
1,543,173	-				-1.7
1,543,241	-		MMJJ_RS08370	0.38	+0.2
1,543,241	-		MMJJ_RS08370	0.38	+0.1
1,543,252	+		MMJJ_RS08370	0.43	+1.2
1,543,252	+		MMJJ_RS08370	0.43	+0.3
1,543,323	-		MMJJ_RS08370	0.81	-0.2
1,543,323	-		MMJJ_RS08370	0.81	+0.5
1,543,324	+		MMJJ_RS08370	0.81	-1.8
1,543,324	+		MMJJ_RS08370	0.81	+0.1
1,543,324	+		MMJJ_RS08370	0.81	+0.9
1,543,327	-		MMJJ_RS08370	0.83	+1.0
1,543,353	-				-0.3
1,543,353	-				+0.8
1,543,358	-				+0.8
1,543,358	-				-0.4
1,543,359	+				+1.9
1,543,359	+				-0.0
1,543,359	+				-0.4
1,543,378	-				-1.0
1,543,379	+				+0.6
1,543,385	-				+0.9
1,543,447	-		MMJJ_RS08375	0.14	+0.3
1,543,448	+		MMJJ_RS08375	0.14	-1.3
1,543,452	-		MMJJ_RS08375	0.15	+0.9
1,543,452	-		MMJJ_RS08375	0.15	-0.9
1,543,453	+		MMJJ_RS08375	0.15	+0.9
1,543,453	+		MMJJ_RS08375	0.15	+0.3
1,543,453	+		MMJJ_RS08375	0.15	+1.4
1,543,453	+		MMJJ_RS08375	0.15	-0.6
1,543,453	+		MMJJ_RS08375	0.15	-3.0
1,543,467	-		MMJJ_RS08375	0.17	-0.0
1,543,524	-		MMJJ_RS08375	0.28	-0.1
1,543,556	+		MMJJ_RS08375	0.35	+0.6
1,543,564	+		MMJJ_RS08375	0.36	-1.2
1,543,609	-		MMJJ_RS08375	0.45	+0.6
1,543,610	+		MMJJ_RS08375	0.45	-0.3
1,543,610	+		MMJJ_RS08375	0.45	+1.3
1,543,623	+		MMJJ_RS08375	0.48	+0.3
1,543,644	-		MMJJ_RS08375	0.52	-1.0
1,543,644	-		MMJJ_RS08375	0.52	-1.7
1,543,644	-		MMJJ_RS08375	0.52	+1.2
1,543,645	+		MMJJ_RS08375	0.52	-0.0
1,543,645	+		MMJJ_RS08375	0.52	+1.4
1,543,646	-		MMJJ_RS08375	0.52	+0.8
1,543,647	+		MMJJ_RS08375	0.52	+0.4
1,543,650	+		MMJJ_RS08375	0.53	+0.3
1,543,713	-		MMJJ_RS08375	0.65	-0.4
1,543,713	-		MMJJ_RS08375	0.65	-0.6
1,543,713	-		MMJJ_RS08375	0.65	-0.2
1,543,714	+		MMJJ_RS08375	0.65	+1.0
1,543,714	+		MMJJ_RS08375	0.65	+0.6
1,543,714	+		MMJJ_RS08375	0.65	-1.5
1,543,717	-		MMJJ_RS08375	0.66	-2.4
1,543,717	-		MMJJ_RS08375	0.66	+0.3
1,543,718	+		MMJJ_RS08375	0.66	-0.7