Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06460

Experiment: H2 N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 10mM Ammonium chloride
1,191,292	+		MMJJ_RS06450	0.21	+0.4
1,191,305	+		MMJJ_RS06450	0.23	+0.0
1,191,403	-		MMJJ_RS06450	0.41	+1.0
1,191,404	+		MMJJ_RS06450	0.41	-0.4
1,191,469	-		MMJJ_RS06450	0.52	+1.0
1,191,469	-		MMJJ_RS06450	0.52	+1.2
1,191,469	-		MMJJ_RS06450	0.52	+0.3
1,191,469	-		MMJJ_RS06450	0.52	+0.5
1,191,470	+		MMJJ_RS06450	0.53	-0.2
1,191,470	+		MMJJ_RS06450	0.53	-1.8
1,191,470	+		MMJJ_RS06450	0.53	+1.1
1,191,483	-		MMJJ_RS06450	0.55	-0.8
1,191,484	+		MMJJ_RS06450	0.55	-0.1
1,191,493	-		MMJJ_RS06450	0.57	-0.6
1,191,493	-		MMJJ_RS06450	0.57	-0.6
1,191,494	+		MMJJ_RS06450	0.57	+0.4
1,191,499	+		MMJJ_RS06450	0.58	+1.4
1,191,520	+		MMJJ_RS06450	0.61	+1.3
1,191,535	-		MMJJ_RS06450	0.64	+0.2
1,191,545	-		MMJJ_RS06450	0.66	-0.1
1,191,546	+		MMJJ_RS06450	0.66	+0.6
1,191,546	+		MMJJ_RS06450	0.66	+0.9
1,191,556	-		MMJJ_RS06450	0.68	-0.7
1,191,556	-		MMJJ_RS06450	0.68	-1.1
1,191,556	-		MMJJ_RS06450	0.68	+0.2
1,191,557	+		MMJJ_RS06450	0.68	+0.3
1,191,574	-		MMJJ_RS06450	0.71	+1.5
1,191,593	+		MMJJ_RS06450	0.75	+1.2
1,191,601	-		MMJJ_RS06450	0.76	-0.9
1,191,635	+		MMJJ_RS06450	0.82	+0.3
1,191,646	-		MMJJ_RS06450	0.84	+0.7
1,191,647	+		MMJJ_RS06450	0.84	+0.6
1,191,655	+		MMJJ_RS06450	0.86	+0.1
1,191,658	-		MMJJ_RS06450	0.86	+2.3
1,191,659	+		MMJJ_RS06450	0.86	+1.2
1,191,659	+		MMJJ_RS06450	0.86	-0.1
1,191,662	+		MMJJ_RS06450	0.87	+1.1
1,191,662	+		MMJJ_RS06450	0.87	+0.2
1,191,662	+		MMJJ_RS06450	0.87	-0.5
1,191,664	-		MMJJ_RS06450	0.87	+1.1
1,191,665	+		MMJJ_RS06450	0.87	-2.6
1,191,700	-				+1.2
1,191,701	+				+1.0
1,191,701	+				+1.6
1,191,781	-				+1.7
1,191,785	-				+1.2
1,191,785	-				-0.5
1,191,785	-				+0.1
1,191,785	-				-1.2
1,191,786	+				+0.2
1,191,787	-				+1.2
1,191,787	-				-0.6
1,191,787	-				-0.3
1,191,787	-				-0.0
1,191,788	+				-0.1
1,191,788	+				+1.0
1,191,788	+				+1.1
1,191,788	+				-0.1
1,191,788	+				+1.9
1,191,791	-				-0.9
1,191,791	-				+0.1
1,191,791	-				+0.7
1,191,791	-				+0.9
1,191,798	-				-0.1
1,191,804	+				-0.0
1,191,842	-				-1.4
1,191,843	+				+0.1
1,191,843	+				+1.4
1,191,843	+				-1.0
1,191,845	-		MMJJ_RS06455	0.10	+0.2
1,191,845	-		MMJJ_RS06455	0.10	-1.9
1,191,845	-		MMJJ_RS06455	0.10	+0.2
1,191,845	-		MMJJ_RS06455	0.10	-1.6
1,191,845	-		MMJJ_RS06455	0.10	+1.1
1,191,846	+		MMJJ_RS06455	0.10	+1.3
1,191,846	+		MMJJ_RS06455	0.10	+0.4
1,191,869	-		MMJJ_RS06455	0.15	+0.0
1,191,870	+		MMJJ_RS06455	0.15	+1.3
1,191,870	+		MMJJ_RS06455	0.15	+0.3
1,191,873	-		MMJJ_RS06455	0.16	+0.0
1,191,873	-		MMJJ_RS06455	0.16	+0.4
1,191,873	-		MMJJ_RS06455	0.16	+0.9
1,191,873	-		MMJJ_RS06455	0.16	-0.2
1,191,874	+		MMJJ_RS06455	0.16	+1.0
1,191,874	+		MMJJ_RS06455	0.16	-0.0
1,191,912	-		MMJJ_RS06455	0.24	-0.1
1,191,912	-		MMJJ_RS06455	0.24	+0.1
1,191,912	-		MMJJ_RS06455	0.24	-1.0
1,191,912	-		MMJJ_RS06455	0.24	-0.0
1,191,913	+		MMJJ_RS06455	0.25	-0.2
1,191,913	+		MMJJ_RS06455	0.25	+0.3
1,191,980	+		MMJJ_RS06455	0.39	+2.0
1,191,983	-		MMJJ_RS06455	0.39	+0.3
1,191,983	-		MMJJ_RS06455	0.39	-1.3
1,191,983	-		MMJJ_RS06455	0.39	+0.8
1,191,984	+		MMJJ_RS06455	0.40	+0.2
1,191,984	+		MMJJ_RS06455	0.40	+0.9
1,192,005	+		MMJJ_RS06455	0.44	+0.6
1,192,091	-		MMJJ_RS06455	0.62	+1.0
1,192,092	+		MMJJ_RS06455	0.63	+1.6
1,192,093	-		MMJJ_RS06455	0.63	+0.9
1,192,093	-		MMJJ_RS06455	0.63	+1.3
1,192,106	-		MMJJ_RS06455	0.66	-0.4
1,192,106	-		MMJJ_RS06455	0.66	+0.1
1,192,106	-		MMJJ_RS06455	0.66	+0.7
1,192,107	+		MMJJ_RS06455	0.66	-0.6
1,192,138	-		MMJJ_RS06455	0.72	+0.7
1,192,142	-		MMJJ_RS06455	0.73	-0.8
1,192,142	-		MMJJ_RS06455	0.73	+0.2
1,192,143	+		MMJJ_RS06455	0.73	-1.6
1,192,150	-		MMJJ_RS06455	0.75	-0.4
1,192,150	-		MMJJ_RS06455	0.75	+1.7
1,192,151	+		MMJJ_RS06455	0.75	+1.5
1,192,151	+		MMJJ_RS06455	0.75	+0.9
1,192,164	-		MMJJ_RS06455	0.78	+1.2
1,192,165	+		MMJJ_RS06455	0.78	-2.4
1,192,165	+		MMJJ_RS06455	0.78	-0.8
1,192,167	-		MMJJ_RS06455	0.79	+0.0
1,192,167	-		MMJJ_RS06455	0.79	+0.8
1,192,168	+		MMJJ_RS06455	0.79	-1.9
1,192,177	-		MMJJ_RS06455	0.81	+2.1
1,192,212	+		MMJJ_RS06455	0.88	+0.7
1,192,215	-		MMJJ_RS06455	0.89	-0.8
1,192,216	+		MMJJ_RS06455	0.89	-0.9
1,192,216	+		MMJJ_RS06455	0.89	-0.9
1,192,221	+				+0.1
1,192,260	-				-0.5
1,192,308	-				+0.1
1,192,308	-				+0.8
1,192,309	+				-0.5
1,192,317	+				+1.5
1,192,345	-		MMJJ_RS06460	0.12	-1.0
1,192,387	+		MMJJ_RS06460	0.21	+0.0
1,192,397	-		MMJJ_RS06460	0.23	+1.1
1,192,397	-		MMJJ_RS06460	0.23	-0.9
1,192,416	-		MMJJ_RS06460	0.28	+1.1
1,192,434	-		MMJJ_RS06460	0.32	+0.4
1,192,437	-		MMJJ_RS06460	0.32	-1.0
1,192,438	+		MMJJ_RS06460	0.32	+1.2
1,192,449	-		MMJJ_RS06460	0.35	-0.4
1,192,449	-		MMJJ_RS06460	0.35	+0.8
1,192,449	-		MMJJ_RS06460	0.35	+1.4
1,192,464	-		MMJJ_RS06460	0.38	-0.9
1,192,515	-		MMJJ_RS06460	0.49	+0.9
1,192,527	-		MMJJ_RS06460	0.52	+1.0
1,192,545	-		MMJJ_RS06460	0.56	+0.4
1,192,558	+		MMJJ_RS06460	0.59	-0.1
1,192,581	-		MMJJ_RS06460	0.64	+1.1
1,192,606	+		MMJJ_RS06460	0.69	-1.3
1,192,655	+		MMJJ_RS06460	0.80	+2.0
1,192,671	-		MMJJ_RS06460	0.84	-0.3
1,192,672	+		MMJJ_RS06460	0.84	+1.0
1,192,672	+		MMJJ_RS06460	0.84	-0.0
1,192,672	+		MMJJ_RS06460	0.84	+0.0
1,192,672	+		MMJJ_RS06460	0.84	-1.8
1,192,677	+		MMJJ_RS06460	0.85	+0.3
1,192,695	-		MMJJ_RS06460	0.89	-0.5
1,192,695	-		MMJJ_RS06460	0.89	+0.6
1,192,696	+		MMJJ_RS06460	0.89	+1.2
1,192,748	+				+1.5
1,192,780	-				+2.1
1,192,784	+				-0.5
1,192,784	+				-0.0
1,192,828	-				+0.1
1,192,836	-				+0.2
1,192,836	-				-1.6
1,192,836	-				+0.9
1,192,836	-				-0.1
1,192,836	-				+1.0
1,192,836	-				+0.7
1,192,836	-				-0.9
1,192,836	-				+1.2
1,192,836	-				+0.5
1,192,836	-				-1.1
1,192,836	-				+0.3
1,192,836	-				+3.0
1,192,836	-				+1.3
1,192,836	-				-0.3
1,192,836	-				+0.2
1,192,836	-				+1.7
1,192,836	-				+1.5
1,192,836	-				+1.3
1,192,836	-				-0.9
1,192,837	+				+1.0
1,192,837	+				+0.6
1,192,837	+				+0.7
1,192,837	+				-1.0
1,192,837	+				-0.5
1,192,837	+				-0.2
1,192,837	+				+0.7
1,192,837	+				-0.0
1,192,837	+				+1.1
1,192,837	+				-0.3
1,192,837	+				+1.0
1,192,837	+				-1.5
1,192,837	+				+0.1
1,192,841	+				-0.3
1,192,841	+				-0.0
1,192,847	+				+0.7
1,192,869	+				-1.2
1,192,891	+				+1.4
1,192,893	+				+1.4
1,192,905	+				+1.4
1,192,964	+				+0.6
1,192,966	-				+1.7
1,192,967	+				+0.9
1,192,967	+				-0.4
1,192,970	+				-0.2
1,192,970	+				+0.6
1,192,970	+				+1.3
1,192,999	-				+0.6
1,192,999	-				+1.4
1,193,000	+				+1.5
1,193,014	-				+1.0
1,193,063	-		MMJJ_RS06465	0.18	-1.0
1,193,088	-		MMJJ_RS06465	0.22	+1.3
1,193,088	-		MMJJ_RS06465	0.22	-0.2
1,193,089	+		MMJJ_RS06465	0.22	+1.7
1,193,089	+		MMJJ_RS06465	0.22	-0.5
1,193,099	+		MMJJ_RS06465	0.24	+0.9
1,193,105	-		MMJJ_RS06465	0.25	+0.4
1,193,106	+		MMJJ_RS06465	0.25	+0.5
1,193,150	-		MMJJ_RS06465	0.32	+0.9
1,193,168	-		MMJJ_RS06465	0.35	-0.6
1,193,267	+		MMJJ_RS06465	0.51	+1.4
1,193,404	+		MMJJ_RS06465	0.74	+1.2
1,193,415	-		MMJJ_RS06465	0.75	-2.1
1,193,415	-		MMJJ_RS06465	0.75	-0.8
1,193,415	-		MMJJ_RS06465	0.75	+2.0
1,193,415	-		MMJJ_RS06465	0.75	-1.2
1,193,416	+		MMJJ_RS06465	0.76	+1.6
1,193,416	+		MMJJ_RS06465	0.76	+1.5
1,193,419	+		MMJJ_RS06465	0.76	-0.6
1,193,419	+		MMJJ_RS06465	0.76	+1.0
1,193,435	-		MMJJ_RS06465	0.79	-1.1
1,193,436	+		MMJJ_RS06465	0.79	+1.5
1,193,442	-		MMJJ_RS06465	0.80	+0.0
1,193,442	-		MMJJ_RS06465	0.80	+0.4
1,193,443	+		MMJJ_RS06465	0.80	-1.1
1,193,443	+		MMJJ_RS06465	0.80	-1.1
1,193,545	+				+0.0
1,193,545	+				-0.5
1,193,623	-				-0.7
1,193,693	-		MMJJ_RS06470	0.10	-0.7
1,193,698	+		MMJJ_RS06470	0.11	-0.1