Experiment: H2 N-free with 10mM Ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03695 and MMJJ_RS03700 are separated by 289 nucleotides MMJJ_RS03700 and MMJJ_RS03705 are separated by 8 nucleotides MMJJ_RS03705 and MMJJ_RS03710 are separated by 20 nucleotides MMJJ_RS03710 and MMJJ_RS03715 are separated by 54 nucleotides
MMJJ_RS03695: MMJJ_RS03695 - phenylacetate--CoA ligase, at 691,487 to 692,731
_RS03695
MMJJ_RS03700: MMJJ_RS03700 - hypothetical protein, at 693,021 to 693,476
_RS03700
MMJJ_RS03705: MMJJ_RS03705 - methanogenesis marker 5 protein, at 693,485 to 693,925
_RS03705
MMJJ_RS03710: MMJJ_RS03710 - DUF2111 domain-containing protein, at 693,946 to 694,329
_RS03710
MMJJ_RS03715: MMJJ_RS03715 - hypothetical protein, at 694,384 to 694,968
_RS03715
Position (kb) 693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 692.028 kb on - strand, within MMJJ_RS03695 at 692.067 kb on - strand, within MMJJ_RS03695 at 692.074 kb on + strand, within MMJJ_RS03695 at 692.074 kb on + strand, within MMJJ_RS03695 at 692.111 kb on + strand, within MMJJ_RS03695 at 692.144 kb on - strand, within MMJJ_RS03695 at 692.166 kb on - strand, within MMJJ_RS03695 at 692.167 kb on + strand, within MMJJ_RS03695 at 692.168 kb on - strand, within MMJJ_RS03695 at 692.169 kb on + strand, within MMJJ_RS03695 at 692.216 kb on - strand, within MMJJ_RS03695 at 692.232 kb on - strand, within MMJJ_RS03695 at 692.233 kb on + strand, within MMJJ_RS03695 at 692.235 kb on - strand, within MMJJ_RS03695 at 692.257 kb on - strand, within MMJJ_RS03695 at 692.298 kb on - strand, within MMJJ_RS03695 at 692.299 kb on + strand, within MMJJ_RS03695 at 692.299 kb on + strand, within MMJJ_RS03695 at 692.312 kb on + strand, within MMJJ_RS03695 at 692.333 kb on + strand, within MMJJ_RS03695 at 692.334 kb on - strand, within MMJJ_RS03695 at 692.334 kb on - strand, within MMJJ_RS03695 at 692.335 kb on + strand, within MMJJ_RS03695 at 692.340 kb on + strand, within MMJJ_RS03695 at 692.381 kb on + strand, within MMJJ_RS03695 at 692.381 kb on + strand, within MMJJ_RS03695 at 692.434 kb on - strand, within MMJJ_RS03695 at 692.446 kb on + strand, within MMJJ_RS03695 at 692.455 kb on + strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.459 kb on + strand, within MMJJ_RS03695 at 692.459 kb on + strand, within MMJJ_RS03695 at 692.461 kb on + strand, within MMJJ_RS03695 at 692.461 kb on + strand, within MMJJ_RS03695 at 692.461 kb on + strand, within MMJJ_RS03695 at 692.463 kb on + strand, within MMJJ_RS03695 at 692.484 kb on - strand, within MMJJ_RS03695 at 692.484 kb on - strand, within MMJJ_RS03695 at 692.487 kb on - strand, within MMJJ_RS03695 at 692.488 kb on + strand, within MMJJ_RS03695 at 692.491 kb on - strand, within MMJJ_RS03695 at 692.492 kb on + strand, within MMJJ_RS03695 at 692.492 kb on + strand, within MMJJ_RS03695 at 692.496 kb on - strand, within MMJJ_RS03695 at 692.497 kb on + strand, within MMJJ_RS03695 at 692.506 kb on + strand, within MMJJ_RS03695 at 692.506 kb on + strand, within MMJJ_RS03695 at 692.510 kb on + strand, within MMJJ_RS03695 at 692.525 kb on + strand, within MMJJ_RS03695 at 692.554 kb on - strand, within MMJJ_RS03695 at 692.555 kb on + strand, within MMJJ_RS03695 at 692.555 kb on + strand, within MMJJ_RS03695 at 692.559 kb on - strand, within MMJJ_RS03695 at 692.559 kb on - strand, within MMJJ_RS03695 at 692.560 kb on + strand, within MMJJ_RS03695 at 692.564 kb on + strand, within MMJJ_RS03695 at 692.568 kb on - strand, within MMJJ_RS03695 at 692.569 kb on + strand, within MMJJ_RS03695 at 692.619 kb on - strand at 692.619 kb on - strand at 692.619 kb on - strand at 692.620 kb on + strand at 692.620 kb on + strand at 692.636 kb on - strand at 692.636 kb on - strand at 692.637 kb on + strand at 692.641 kb on + strand at 692.704 kb on - strand at 692.730 kb on + strand at 692.774 kb on - strand at 692.777 kb on - strand at 692.777 kb on - strand at 692.778 kb on + strand at 692.849 kb on + strand at 692.852 kb on - strand at 692.855 kb on - strand at 692.855 kb on - strand at 692.856 kb on + strand at 692.885 kb on + strand at 692.904 kb on - strand at 692.905 kb on + strand at 692.906 kb on - strand at 692.906 kb on - strand at 692.906 kb on - strand at 692.906 kb on - strand at 692.906 kb on - strand at 692.906 kb on - strand at 692.907 kb on + strand at 692.907 kb on + strand at 692.907 kb on + strand at 692.908 kb on - strand at 692.909 kb on + strand at 692.909 kb on + strand at 692.909 kb on + strand at 692.909 kb on + strand at 692.915 kb on - strand at 692.915 kb on - strand at 692.916 kb on + strand at 692.916 kb on + strand at 692.919 kb on - strand at 692.920 kb on + strand at 692.923 kb on - strand at 692.924 kb on + strand at 692.955 kb on + strand at 692.955 kb on + strand at 692.956 kb on - strand at 692.957 kb on + strand at 692.959 kb on + strand at 692.960 kb on - strand at 692.961 kb on + strand at 692.961 kb on + strand at 692.996 kb on + strand at 693.016 kb on - strand at 693.016 kb on - strand at 693.018 kb on - strand at 693.018 kb on - strand at 693.018 kb on - strand at 693.018 kb on - strand at 693.036 kb on - strand at 693.036 kb on - strand at 693.039 kb on - strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.045 kb on - strand at 693.045 kb on - strand at 693.046 kb on + strand at 693.046 kb on + strand at 693.046 kb on + strand at 693.079 kb on + strand, within MMJJ_RS03700 at 693.129 kb on - strand, within MMJJ_RS03700 at 693.177 kb on + strand, within MMJJ_RS03700 at 693.178 kb on - strand, within MMJJ_RS03700 at 693.178 kb on - strand, within MMJJ_RS03700 at 693.179 kb on + strand, within MMJJ_RS03700 at 693.179 kb on + strand, within MMJJ_RS03700 at 693.182 kb on - strand, within MMJJ_RS03700 at 693.182 kb on - strand, within MMJJ_RS03700 at 693.183 kb on + strand, within MMJJ_RS03700 at 693.183 kb on + strand, within MMJJ_RS03700 at 693.183 kb on + strand, within MMJJ_RS03700 at 693.227 kb on - strand, within MMJJ_RS03700 at 693.227 kb on - strand, within MMJJ_RS03700 at 693.228 kb on + strand, within MMJJ_RS03700 at 693.285 kb on - strand, within MMJJ_RS03700 at 693.409 kb on + strand, within MMJJ_RS03700 at 693.458 kb on - strand at 693.782 kb on - strand, within MMJJ_RS03705 at 693.784 kb on - strand at 693.928 kb on - strand at 693.947 kb on - strand at 693.948 kb on + strand at 693.948 kb on + strand at 693.948 kb on + strand at 694.034 kb on + strand, within MMJJ_RS03710 at 694.040 kb on + strand, within MMJJ_RS03710 at 694.040 kb on + strand, within MMJJ_RS03710 at 694.044 kb on - strand, within MMJJ_RS03710 at 694.044 kb on - strand, within MMJJ_RS03710 at 694.044 kb on - strand, within MMJJ_RS03710 at 694.044 kb on - strand, within MMJJ_RS03710 at 694.048 kb on - strand, within MMJJ_RS03710 at 694.049 kb on + strand, within MMJJ_RS03710 at 694.049 kb on + strand, within MMJJ_RS03710 at 694.078 kb on - strand, within MMJJ_RS03710 at 694.079 kb on + strand, within MMJJ_RS03710 at 694.122 kb on - strand, within MMJJ_RS03710 at 694.165 kb on - strand, within MMJJ_RS03710 at 694.173 kb on + strand, within MMJJ_RS03710 at 694.195 kb on - strand, within MMJJ_RS03710 at 694.216 kb on + strand, within MMJJ_RS03710 at 694.267 kb on - strand, within MMJJ_RS03710 at 694.268 kb on + strand, within MMJJ_RS03710 at 694.273 kb on - strand, within MMJJ_RS03710 at 694.274 kb on + strand, within MMJJ_RS03710 at 694.274 kb on + strand, within MMJJ_RS03710 at 694.275 kb on - strand, within MMJJ_RS03710 at 694.294 kb on - strand at 694.295 kb on + strand at 694.302 kb on - strand at 694.303 kb on + strand at 694.342 kb on - strand at 694.342 kb on - strand at 694.346 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.358 kb on - strand at 694.358 kb on - strand at 694.359 kb on + strand at 694.368 kb on - strand at 694.369 kb on + strand at 694.369 kb on + strand at 694.375 kb on + strand at 694.407 kb on - strand at 694.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM Ammonium chloride remove 692,028 - MMJJ_RS03695 0.43 -0.1 692,067 - MMJJ_RS03695 0.47 +0.2 692,074 + MMJJ_RS03695 0.47 -0.7 692,074 + MMJJ_RS03695 0.47 +0.7 692,111 + MMJJ_RS03695 0.50 +1.1 692,144 - MMJJ_RS03695 0.53 +0.0 692,166 - MMJJ_RS03695 0.55 -1.3 692,167 + MMJJ_RS03695 0.55 -0.9 692,168 - MMJJ_RS03695 0.55 +0.8 692,169 + MMJJ_RS03695 0.55 +0.5 692,216 - MMJJ_RS03695 0.59 +1.3 692,232 - MMJJ_RS03695 0.60 +0.5 692,233 + MMJJ_RS03695 0.60 +0.1 692,235 - MMJJ_RS03695 0.60 +1.2 692,257 - MMJJ_RS03695 0.62 +0.1 692,298 - MMJJ_RS03695 0.65 +0.5 692,299 + MMJJ_RS03695 0.65 +0.0 692,299 + MMJJ_RS03695 0.65 +1.1 692,312 + MMJJ_RS03695 0.66 -1.0 692,333 + MMJJ_RS03695 0.68 +0.3 692,334 - MMJJ_RS03695 0.68 +1.3 692,334 - MMJJ_RS03695 0.68 -0.7 692,335 + MMJJ_RS03695 0.68 +0.1 692,340 + MMJJ_RS03695 0.69 +0.9 692,381 + MMJJ_RS03695 0.72 -0.2 692,381 + MMJJ_RS03695 0.72 +0.8 692,434 - MMJJ_RS03695 0.76 -0.1 692,446 + MMJJ_RS03695 0.77 -1.0 692,455 + MMJJ_RS03695 0.78 +1.0 692,458 - MMJJ_RS03695 0.78 +0.5 692,458 - MMJJ_RS03695 0.78 +0.3 692,458 - MMJJ_RS03695 0.78 +1.1 692,458 - MMJJ_RS03695 0.78 -1.1 692,458 - MMJJ_RS03695 0.78 +0.2 692,458 - MMJJ_RS03695 0.78 -0.7 692,459 + MMJJ_RS03695 0.78 +0.7 692,459 + MMJJ_RS03695 0.78 -0.1 692,461 + MMJJ_RS03695 0.78 +0.6 692,461 + MMJJ_RS03695 0.78 -0.3 692,461 + MMJJ_RS03695 0.78 -0.5 692,463 + MMJJ_RS03695 0.78 -1.1 692,484 - MMJJ_RS03695 0.80 +0.9 692,484 - MMJJ_RS03695 0.80 -0.9 692,487 - MMJJ_RS03695 0.80 -0.6 692,488 + MMJJ_RS03695 0.80 +0.8 692,491 - MMJJ_RS03695 0.81 +1.0 692,492 + MMJJ_RS03695 0.81 +0.3 692,492 + MMJJ_RS03695 0.81 +0.2 692,496 - MMJJ_RS03695 0.81 +0.1 692,497 + MMJJ_RS03695 0.81 +1.4 692,506 + MMJJ_RS03695 0.82 +0.2 692,506 + MMJJ_RS03695 0.82 -0.0 692,510 + MMJJ_RS03695 0.82 -1.0 692,525 + MMJJ_RS03695 0.83 +0.1 692,554 - MMJJ_RS03695 0.86 +0.2 692,555 + MMJJ_RS03695 0.86 +0.1 692,555 + MMJJ_RS03695 0.86 -0.2 692,559 - MMJJ_RS03695 0.86 +1.5 692,559 - MMJJ_RS03695 0.86 -0.6 692,560 + MMJJ_RS03695 0.86 -0.8 692,564 + MMJJ_RS03695 0.87 +0.1 692,568 - MMJJ_RS03695 0.87 -1.8 692,569 + MMJJ_RS03695 0.87 +0.2 692,619 - -1.2 692,619 - +0.7 692,619 - -0.3 692,620 + +0.7 692,620 + -1.4 692,636 - -2.5 692,636 - +0.6 692,637 + -0.4 692,641 + -1.0 692,704 - +1.1 692,730 + -1.2 692,774 - +0.3 692,777 - +0.9 692,777 - -0.3 692,778 + +0.2 692,849 + +0.2 692,852 - +0.6 692,855 - -0.5 692,855 - -0.6 692,856 + +0.8 692,885 + -0.1 692,904 - -0.9 692,905 + -0.2 692,906 - +0.2 692,906 - -0.8 692,906 - -1.2 692,906 - -0.9 692,906 - -0.0 692,906 - -0.8 692,907 + -0.8 692,907 + -0.5 692,907 + -0.5 692,908 - -2.6 692,909 + +1.1 692,909 + +0.9 692,909 + +1.2 692,909 + +0.9 692,915 - -1.1 692,915 - +0.4 692,916 + -0.7 692,916 + +0.6 692,919 - -0.1 692,920 + +0.6 692,923 - +0.7 692,924 + +2.1 692,955 + -0.9 692,955 + -0.8 692,956 - -0.6 692,957 + +0.9 692,959 + -0.4 692,960 - +0.4 692,961 + -0.3 692,961 + +0.7 692,996 + +0.8 693,016 - -2.5 693,016 - -0.2 693,018 - +0.0 693,018 - -0.8 693,018 - +1.2 693,018 - -0.0 693,036 - +0.5 693,036 - -0.0 693,039 - +1.5 693,040 + +0.4 693,040 + -1.5 693,045 - -0.1 693,045 - +0.9 693,046 + -0.1 693,046 + -0.2 693,046 + +0.1 693,079 + MMJJ_RS03700 0.13 +0.4 693,129 - MMJJ_RS03700 0.24 +0.2 693,177 + MMJJ_RS03700 0.34 -0.4 693,178 - MMJJ_RS03700 0.34 +0.4 693,178 - MMJJ_RS03700 0.34 -0.1 693,179 + MMJJ_RS03700 0.35 +1.3 693,179 + MMJJ_RS03700 0.35 +1.5 693,182 - MMJJ_RS03700 0.35 +0.0 693,182 - MMJJ_RS03700 0.35 +0.6 693,183 + MMJJ_RS03700 0.36 +1.4 693,183 + MMJJ_RS03700 0.36 +1.2 693,183 + MMJJ_RS03700 0.36 +0.6 693,227 - MMJJ_RS03700 0.45 +1.2 693,227 - MMJJ_RS03700 0.45 -0.4 693,228 + MMJJ_RS03700 0.45 +1.1 693,285 - MMJJ_RS03700 0.58 +0.3 693,409 + MMJJ_RS03700 0.85 -2.6 693,458 - -1.1 693,782 - MMJJ_RS03705 0.67 -1.4 693,784 - -1.2 693,928 - -2.8 693,947 - +0.1 693,948 + -2.5 693,948 + -2.1 693,948 + +0.0 694,034 + MMJJ_RS03710 0.23 -1.2 694,040 + MMJJ_RS03710 0.24 -0.7 694,040 + MMJJ_RS03710 0.24 -1.5 694,044 - MMJJ_RS03710 0.26 +0.6 694,044 - MMJJ_RS03710 0.26 -0.7 694,044 - MMJJ_RS03710 0.26 -1.1 694,044 - MMJJ_RS03710 0.26 -0.8 694,048 - MMJJ_RS03710 0.27 +0.1 694,049 + MMJJ_RS03710 0.27 -1.1 694,049 + MMJJ_RS03710 0.27 -1.3 694,078 - MMJJ_RS03710 0.34 -0.1 694,079 + MMJJ_RS03710 0.35 +0.0 694,122 - MMJJ_RS03710 0.46 +0.3 694,165 - MMJJ_RS03710 0.57 -1.0 694,173 + MMJJ_RS03710 0.59 -1.6 694,195 - MMJJ_RS03710 0.65 +1.2 694,216 + MMJJ_RS03710 0.70 -2.0 694,267 - MMJJ_RS03710 0.84 -0.1 694,268 + MMJJ_RS03710 0.84 -2.4 694,273 - MMJJ_RS03710 0.85 +0.4 694,274 + MMJJ_RS03710 0.85 -0.3 694,274 + MMJJ_RS03710 0.85 -2.7 694,275 - MMJJ_RS03710 0.86 -1.9 694,294 - -1.3 694,295 + -1.6 694,302 - -2.1 694,303 + -2.3 694,342 - -1.3 694,342 - -1.2 694,346 - -1.9 694,354 - -0.1 694,354 - -1.5 694,354 - -2.0 694,354 - -0.0 694,354 - -0.4 694,354 - -2.0 694,354 - -1.8 694,354 - -0.5 694,354 - -0.2 694,354 - -1.4 694,354 - -1.5 694,354 - -2.0 694,354 - -0.4 694,354 - -2.2 694,354 - -0.2 694,355 + -1.1 694,355 + -0.7 694,355 + -2.5 694,355 + -2.4 694,355 + +1.2 694,355 + -2.3 694,355 + -2.9 694,355 + -1.7 694,355 + -2.0 694,355 + -2.2 694,355 + -2.9 694,355 + -2.3 694,355 + -2.2 694,358 - +0.3 694,358 - +0.4 694,359 + -2.8 694,368 - +0.3 694,369 + -0.9 694,369 + -2.9 694,375 + -0.4 694,407 - +0.1 694,408 + -0.1
Or see this region's nucleotide sequence