Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03585

Experiment: H2 N-free with 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03580 and MMJJ_RS03585 are separated by 29 nucleotidesMMJJ_RS03585 and MMJJ_RS03590 are separated by 16 nucleotidesMMJJ_RS03590 and MMJJ_RS03595 are separated by 47 nucleotidesMMJJ_RS03595 and MMJJ_RS03600 are separated by 70 nucleotides MMJJ_RS03580: MMJJ_RS03580 - TIGR00303 family protein, at 668,823 to 669,875 _RS03580 MMJJ_RS03585: MMJJ_RS03585 - methanogenesis marker 6 protein, at 669,905 to 670,351 _RS03585 MMJJ_RS03590: MMJJ_RS03590 - restriction endonuclease, at 670,368 to 670,775 _RS03590 MMJJ_RS03595: MMJJ_RS03595 - hypothetical protein, at 670,823 to 671,236 _RS03595 MMJJ_RS03600: MMJJ_RS03600 - TrmJ/YjtD family RNA methyltransferase, at 671,307 to 672,011 _RS03600 Position (kb) 669 670 671Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 668.922 kb on - strandat 668.922 kb on - strandat 668.922 kb on - strandat 668.923 kb on + strandat 668.995 kb on - strand, within MMJJ_RS03580at 669.239 kb on - strand, within MMJJ_RS03580at 669.245 kb on - strand, within MMJJ_RS03580at 669.255 kb on + strand, within MMJJ_RS03580at 669.260 kb on + strand, within MMJJ_RS03580at 669.263 kb on + strand, within MMJJ_RS03580at 669.339 kb on + strand, within MMJJ_RS03580at 669.736 kb on + strand, within MMJJ_RS03580at 669.829 kb on + strandat 669.850 kb on - strandat 669.851 kb on + strandat 669.968 kb on - strand, within MMJJ_RS03585at 670.291 kb on - strand, within MMJJ_RS03585at 670.336 kb on + strandat 670.336 kb on + strandat 670.336 kb on + strandat 670.349 kb on - strandat 670.350 kb on + strandat 670.376 kb on - strandat 670.377 kb on + strandat 670.381 kb on + strandat 670.394 kb on - strandat 670.394 kb on - strandat 670.477 kb on - strand, within MMJJ_RS03590at 670.508 kb on - strand, within MMJJ_RS03590at 670.545 kb on - strand, within MMJJ_RS03590at 670.546 kb on + strand, within MMJJ_RS03590at 670.626 kb on + strand, within MMJJ_RS03590at 670.639 kb on - strand, within MMJJ_RS03590at 670.639 kb on - strand, within MMJJ_RS03590at 670.644 kb on + strand, within MMJJ_RS03590at 670.645 kb on - strand, within MMJJ_RS03590at 670.646 kb on + strand, within MMJJ_RS03590at 670.745 kb on - strandat 670.773 kb on - strandat 670.773 kb on - strandat 670.774 kb on + strandat 670.776 kb on - strandat 670.776 kb on - strandat 670.776 kb on - strandat 670.776 kb on - strandat 670.777 kb on + strandat 670.778 kb on - strandat 670.778 kb on - strandat 670.778 kb on - strandat 670.779 kb on + strandat 670.779 kb on + strandat 670.792 kb on + strandat 670.839 kb on + strandat 670.866 kb on + strand, within MMJJ_RS03595at 670.866 kb on + strand, within MMJJ_RS03595at 670.869 kb on - strand, within MMJJ_RS03595at 670.869 kb on - strand, within MMJJ_RS03595at 670.869 kb on - strand, within MMJJ_RS03595at 670.870 kb on + strand, within MMJJ_RS03595at 670.870 kb on + strand, within MMJJ_RS03595at 670.889 kb on - strand, within MMJJ_RS03595at 670.890 kb on + strand, within MMJJ_RS03595at 670.968 kb on + strand, within MMJJ_RS03595at 670.984 kb on - strand, within MMJJ_RS03595at 671.019 kb on + strand, within MMJJ_RS03595at 671.166 kb on + strand, within MMJJ_RS03595at 671.229 kb on + strandat 671.229 kb on + strandat 671.229 kb on + strandat 671.229 kb on + strandat 671.229 kb on + strandat 671.230 kb on - strandat 671.230 kb on - strandat 671.230 kb on - strandat 671.257 kb on - strandat 671.257 kb on - strandat 671.258 kb on + strandat 671.261 kb on + strandat 671.266 kb on - strandat 671.270 kb on + strandat 671.276 kb on + strandat 671.276 kb on + strandat 671.309 kb on + strandat 671.321 kb on - strandat 671.322 kb on + strandat 671.328 kb on + strandat 671.337 kb on - strandat 671.338 kb on + strandat 671.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Ammonium chloride
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668,922 - -2.6
668,922 - -2.1
668,922 - -2.0
668,923 + -2.6
668,995 - MMJJ_RS03580 0.16 -3.6
669,239 - MMJJ_RS03580 0.40 -1.4
669,245 - MMJJ_RS03580 0.40 -2.0
669,255 + MMJJ_RS03580 0.41 -0.6
669,260 + MMJJ_RS03580 0.42 -3.3
669,263 + MMJJ_RS03580 0.42 -2.1
669,339 + MMJJ_RS03580 0.49 -1.4
669,736 + MMJJ_RS03580 0.87 -3.1
669,829 + +0.2
669,850 - -2.7
669,851 + -1.6
669,968 - MMJJ_RS03585 0.14 -2.1
670,291 - MMJJ_RS03585 0.86 -2.9
670,336 + -1.0
670,336 + -0.9
670,336 + -1.3
670,349 - -0.1
670,350 + +0.6
670,376 - -1.3
670,377 + +0.3
670,381 + +1.0
670,394 - -1.5
670,394 - +0.5
670,477 - MMJJ_RS03590 0.27 -0.4
670,508 - MMJJ_RS03590 0.34 +0.6
670,545 - MMJJ_RS03590 0.43 -0.6
670,546 + MMJJ_RS03590 0.44 +0.5
670,626 + MMJJ_RS03590 0.63 -0.7
670,639 - MMJJ_RS03590 0.66 +0.3
670,639 - MMJJ_RS03590 0.66 -1.0
670,644 + MMJJ_RS03590 0.68 -0.8
670,645 - MMJJ_RS03590 0.68 +0.3
670,646 + MMJJ_RS03590 0.68 -0.7
670,745 - -2.0
670,773 - +0.6
670,773 - +1.4
670,774 + +0.3
670,776 - +1.2
670,776 - +0.1
670,776 - -0.6
670,776 - -0.3
670,777 + +1.2
670,778 - +2.6
670,778 - -0.1
670,778 - +0.9
670,779 + -1.0
670,779 + +0.1
670,792 + -1.2
670,839 + +0.5
670,866 + MMJJ_RS03595 0.10 -0.1
670,866 + MMJJ_RS03595 0.10 -1.4
670,869 - MMJJ_RS03595 0.11 -1.4
670,869 - MMJJ_RS03595 0.11 -1.4
670,869 - MMJJ_RS03595 0.11 +0.8
670,870 + MMJJ_RS03595 0.11 -0.7
670,870 + MMJJ_RS03595 0.11 +0.0
670,889 - MMJJ_RS03595 0.16 -0.3
670,890 + MMJJ_RS03595 0.16 +1.3
670,968 + MMJJ_RS03595 0.35 -0.2
670,984 - MMJJ_RS03595 0.39 -0.4
671,019 + MMJJ_RS03595 0.47 -0.9
671,166 + MMJJ_RS03595 0.83 -0.8
671,229 + +0.4
671,229 + -0.3
671,229 + -2.3
671,229 + +0.5
671,229 + -0.3
671,230 - -2.5
671,230 - +0.5
671,230 - -2.2
671,257 - +0.0
671,257 - -0.9
671,258 + -1.2
671,261 + -1.1
671,266 - +1.0
671,270 + +0.6
671,276 + +0.5
671,276 + -0.5
671,309 + -0.5
671,321 - +1.0
671,322 + -0.5
671,328 + -1.2
671,337 - +0.9
671,338 + -1.1
671,341 + -0.4

Or see this region's nucleotide sequence