Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2445

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2444 and Ga0059261_2445 are separated by 217 nucleotidesGa0059261_2445 and Ga0059261_2446 are separated by 166 nucleotides Ga0059261_2444: Ga0059261_2444 - 5-aminolevulinic acid synthase, at 2,528,637 to 2,529,878 _2444 Ga0059261_2445: Ga0059261_2445 - hypothetical protein, at 2,530,096 to 2,530,263 _2445 Ga0059261_2446: Ga0059261_2446 - glutamate racemase (EC 5.1.1.3), at 2,530,430 to 2,531,227 _2446 Position (kb) 2530 2531Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2529.187 kb on + strand, within Ga0059261_2444at 2529.187 kb on + strand, within Ga0059261_2444at 2529.187 kb on + strand, within Ga0059261_2444at 2529.187 kb on + strand, within Ga0059261_2444at 2529.204 kb on + strand, within Ga0059261_2444at 2529.205 kb on - strand, within Ga0059261_2444at 2529.205 kb on - strandat 2529.205 kb on - strand, within Ga0059261_2444at 2529.217 kb on + strand, within Ga0059261_2444at 2529.217 kb on + strand, within Ga0059261_2444at 2529.217 kb on + strandat 2529.217 kb on + strand, within Ga0059261_2444at 2529.218 kb on - strand, within Ga0059261_2444at 2529.218 kb on - strand, within Ga0059261_2444at 2529.232 kb on + strand, within Ga0059261_2444at 2529.232 kb on + strand, within Ga0059261_2444at 2529.232 kb on + strand, within Ga0059261_2444at 2529.233 kb on - strand, within Ga0059261_2444at 2529.289 kb on + strand, within Ga0059261_2444at 2529.290 kb on - strand, within Ga0059261_2444at 2529.445 kb on + strand, within Ga0059261_2444at 2529.519 kb on + strand, within Ga0059261_2444at 2529.577 kb on + strand, within Ga0059261_2444at 2529.577 kb on + strand, within Ga0059261_2444at 2529.578 kb on - strand, within Ga0059261_2444at 2529.578 kb on - strand, within Ga0059261_2444at 2529.578 kb on - strand, within Ga0059261_2444at 2529.578 kb on - strand, within Ga0059261_2444at 2529.903 kb on - strandat 2529.961 kb on + strandat 2529.961 kb on + strandat 2529.962 kb on - strandat 2529.962 kb on - strandat 2529.962 kb on - strandat 2530.009 kb on + strandat 2530.009 kb on + strandat 2530.009 kb on + strandat 2530.009 kb on + strandat 2530.009 kb on + strandat 2530.009 kb on + strandat 2530.009 kb on + strandat 2530.009 kb on + strandat 2530.009 kb on + strandat 2530.010 kb on - strandat 2530.010 kb on - strandat 2530.015 kb on + strandat 2530.015 kb on + strandat 2530.015 kb on + strandat 2530.015 kb on + strandat 2530.015 kb on + strandat 2530.015 kb on + strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.016 kb on - strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.017 kb on + strandat 2530.018 kb on - strandat 2530.018 kb on - strandat 2530.018 kb on - strandat 2530.018 kb on - strandat 2530.018 kb on - strandat 2530.018 kb on - strandat 2530.018 kb on - strandat 2530.018 kb on - strandat 2530.018 kb on - strandat 2530.111 kb on + strandat 2530.111 kb on + strandat 2530.111 kb on + strandat 2530.111 kb on + strandat 2530.111 kb on + strandat 2530.111 kb on + strandat 2530.111 kb on + strandat 2530.111 kb on + strandat 2530.112 kb on - strandat 2530.112 kb on - strandat 2530.112 kb on - strandat 2530.112 kb on - strandat 2530.112 kb on - strandat 2530.112 kb on - strandat 2530.112 kb on - strandat 2530.112 kb on - strandat 2530.112 kb on - strandat 2530.112 kb on - strandat 2530.117 kb on + strand, within Ga0059261_2445at 2530.117 kb on + strand, within Ga0059261_2445at 2530.117 kb on + strand, within Ga0059261_2445at 2530.117 kb on + strand, within Ga0059261_2445at 2530.117 kb on + strand, within Ga0059261_2445at 2530.118 kb on - strand, within Ga0059261_2445at 2530.118 kb on - strand, within Ga0059261_2445at 2530.118 kb on - strand, within Ga0059261_2445at 2530.118 kb on - strand, within Ga0059261_2445at 2530.223 kb on + strand, within Ga0059261_2445at 2530.261 kb on + strandat 2530.261 kb on + strandat 2530.261 kb on + strandat 2530.261 kb on + strandat 2530.261 kb on + strandat 2530.261 kb on + strandat 2530.262 kb on - strandat 2530.262 kb on - strandat 2530.262 kb on - strandat 2530.262 kb on - strandat 2530.262 kb on - strandat 2530.336 kb on + strandat 2530.336 kb on + strandat 2530.336 kb on + strandat 2530.337 kb on - strandat 2530.337 kb on - strandat 2530.337 kb on - strandat 2530.337 kb on - strandat 2530.337 kb on - strandat 2530.398 kb on + strandat 2530.425 kb on - strandat 2531.228 kb on - strandat 2531.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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2,529,187 + Ga0059261_2444 0.44 -0.8
2,529,187 + Ga0059261_2444 0.44 -2.4
2,529,187 + Ga0059261_2444 0.44 -1.5
2,529,187 + Ga0059261_2444 0.44 -0.8
2,529,204 + Ga0059261_2444 0.46 -3.0
2,529,205 - Ga0059261_2444 0.46 -2.7
2,529,205 - -1.1
2,529,205 - Ga0059261_2444 0.46 -1.3
2,529,217 + Ga0059261_2444 0.47 -2.5
2,529,217 + Ga0059261_2444 0.47 -0.8
2,529,217 + -0.1
2,529,217 + Ga0059261_2444 0.47 -2.3
2,529,218 - Ga0059261_2444 0.47 -1.5
2,529,218 - Ga0059261_2444 0.47 -0.8
2,529,232 + Ga0059261_2444 0.48 -1.8
2,529,232 + Ga0059261_2444 0.48 -0.9
2,529,232 + Ga0059261_2444 0.48 -2.9
2,529,233 - Ga0059261_2444 0.48 -1.8
2,529,289 + Ga0059261_2444 0.52 -2.9
2,529,290 - Ga0059261_2444 0.53 -2.5
2,529,445 + Ga0059261_2444 0.65 +0.5
2,529,519 + Ga0059261_2444 0.71 -1.1
2,529,577 + Ga0059261_2444 0.76 -1.2
2,529,577 + Ga0059261_2444 0.76 -2.6
2,529,578 - Ga0059261_2444 0.76 -0.5
2,529,578 - Ga0059261_2444 0.76 -2.2
2,529,578 - Ga0059261_2444 0.76 -3.8
2,529,578 - Ga0059261_2444 0.76 -1.8
2,529,903 - +0.0
2,529,961 + +0.3
2,529,961 + +1.5
2,529,962 - +0.2
2,529,962 - +0.5
2,529,962 - +0.1
2,530,009 + -0.1
2,530,009 + +0.8
2,530,009 + +0.2
2,530,009 + +0.1
2,530,009 + +0.1
2,530,009 + -0.1
2,530,009 + +1.1
2,530,009 + +0.6
2,530,009 + -1.1
2,530,010 - -0.6
2,530,010 - -0.3
2,530,015 + -0.2
2,530,015 + +0.0
2,530,015 + -0.0
2,530,015 + +0.4
2,530,015 + +0.5
2,530,015 + -0.3
2,530,016 - -0.2
2,530,016 - -1.4
2,530,016 - +0.4
2,530,016 - -0.4
2,530,016 - +0.9
2,530,016 - -0.3
2,530,016 - +0.4
2,530,016 - -0.8
2,530,016 - -0.5
2,530,016 - -0.1
2,530,016 - -0.1
2,530,016 - +0.2
2,530,016 - +0.2
2,530,017 + -0.5
2,530,017 + +0.2
2,530,017 + +0.1
2,530,017 + -0.3
2,530,017 + -0.0
2,530,017 + -0.5
2,530,017 + -0.1
2,530,017 + +0.2
2,530,017 + -0.6
2,530,017 + -1.0
2,530,017 + +0.1
2,530,018 - -0.2
2,530,018 - -0.2
2,530,018 - +0.6
2,530,018 - -1.3
2,530,018 - -0.4
2,530,018 - -0.1
2,530,018 - -0.3
2,530,018 - +0.5
2,530,018 - +2.5
2,530,111 + -0.9
2,530,111 + +0.2
2,530,111 + -0.9
2,530,111 + +0.3
2,530,111 + -1.5
2,530,111 + +0.7
2,530,111 + +0.7
2,530,111 + -0.1
2,530,112 - -0.5
2,530,112 - -0.4
2,530,112 - +0.8
2,530,112 - -0.4
2,530,112 - -0.3
2,530,112 - +0.7
2,530,112 - +0.0
2,530,112 - -0.2
2,530,112 - -0.3
2,530,112 - -0.0
2,530,117 + Ga0059261_2445 0.12 -0.0
2,530,117 + Ga0059261_2445 0.12 -0.6
2,530,117 + Ga0059261_2445 0.12 -0.2
2,530,117 + Ga0059261_2445 0.12 -0.3
2,530,117 + Ga0059261_2445 0.12 +0.1
2,530,118 - Ga0059261_2445 0.13 +1.1
2,530,118 - Ga0059261_2445 0.13 -0.2
2,530,118 - Ga0059261_2445 0.13 +0.2
2,530,118 - Ga0059261_2445 0.13 -0.1
2,530,223 + Ga0059261_2445 0.76 -0.6
2,530,261 + -0.1
2,530,261 + +0.1
2,530,261 + -0.7
2,530,261 + +0.1
2,530,261 + -0.5
2,530,261 + -0.1
2,530,262 - +0.5
2,530,262 - +0.6
2,530,262 - +0.3
2,530,262 - -0.2
2,530,262 - +0.0
2,530,336 + +0.0
2,530,336 + -0.2
2,530,336 + -0.3
2,530,337 - +0.3
2,530,337 - -0.7
2,530,337 - +0.5
2,530,337 - +0.5
2,530,337 - +0.5
2,530,398 + +0.6
2,530,425 - -0.4
2,531,228 - +0.6
2,531,228 - -0.1

Or see this region's nucleotide sequence