Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2037 and Ga0059261_2038 are separated by 199 nucleotides Ga0059261_2038 and Ga0059261_2039 are separated by 70 nucleotides Ga0059261_2039 and Ga0059261_2040 overlap by 4 nucleotides
Ga0059261_2037: Ga0059261_2037 - LSU ribosomal protein L20P, at 2,138,198 to 2,138,563
_2037
Ga0059261_2038: Ga0059261_2038 - Putative threonine efflux protein, at 2,138,763 to 2,139,386
_2038
Ga0059261_2039: Ga0059261_2039 - phenylalanyl-tRNA synthetase, alpha subunit (EC 6.1.1.20), at 2,139,457 to 2,140,554
_2039
Ga0059261_2040: Ga0059261_2040 - phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20), at 2,140,551 to 2,142,962
_2040
Position (kb)
2139
2140
2141 Strain fitness (log2 ratio)
-1
0
1 at 2138.787 kb on + strand at 2138.787 kb on + strand at 2138.787 kb on + strand at 2138.787 kb on + strand at 2138.787 kb on + strand at 2138.787 kb on + strand at 2138.787 kb on + strand at 2138.788 kb on - strand at 2138.788 kb on - strand at 2138.788 kb on - strand at 2138.788 kb on - strand at 2138.788 kb on - strand at 2138.788 kb on - strand at 2138.788 kb on - strand at 2138.788 kb on - strand at 2138.991 kb on + strand, within Ga0059261_2038 at 2138.991 kb on + strand, within Ga0059261_2038 at 2138.991 kb on + strand, within Ga0059261_2038 at 2138.992 kb on - strand, within Ga0059261_2038 at 2139.006 kb on + strand, within Ga0059261_2038 at 2139.006 kb on + strand, within Ga0059261_2038 at 2139.006 kb on + strand, within Ga0059261_2038 at 2139.006 kb on + strand, within Ga0059261_2038 at 2139.007 kb on - strand, within Ga0059261_2038 at 2139.007 kb on - strand, within Ga0059261_2038 at 2139.007 kb on - strand, within Ga0059261_2038 at 2139.007 kb on - strand, within Ga0059261_2038 at 2139.007 kb on - strand, within Ga0059261_2038 at 2139.007 kb on - strand, within Ga0059261_2038 at 2139.102 kb on + strand, within Ga0059261_2038 at 2139.102 kb on + strand, within Ga0059261_2038 at 2139.102 kb on + strand, within Ga0059261_2038 at 2139.102 kb on + strand, within Ga0059261_2038 at 2139.103 kb on - strand, within Ga0059261_2038 at 2139.103 kb on - strand, within Ga0059261_2038 at 2139.103 kb on - strand, within Ga0059261_2038 at 2139.252 kb on + strand, within Ga0059261_2038 at 2139.252 kb on + strand, within Ga0059261_2038 at 2139.252 kb on + strand, within Ga0059261_2038 at 2139.252 kb on + strand, within Ga0059261_2038 at 2139.253 kb on - strand, within Ga0059261_2038 at 2139.253 kb on - strand, within Ga0059261_2038 at 2139.253 kb on - strand, within Ga0059261_2038 at 2139.253 kb on - strand, within Ga0059261_2038 at 2139.253 kb on - strand, within Ga0059261_2038 at 2139.253 kb on - strand, within Ga0059261_2038 at 2139.261 kb on + strand, within Ga0059261_2038 at 2139.261 kb on + strand, within Ga0059261_2038 at 2139.262 kb on - strand, within Ga0059261_2038 at 2139.262 kb on - strand, within Ga0059261_2038 at 2139.262 kb on - strand, within Ga0059261_2038 at 2139.262 kb on - strand, within Ga0059261_2038 at 2139.384 kb on + strand at 2139.384 kb on + strand at 2139.384 kb on + strand at 2139.385 kb on - strand at 2139.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 2,138,787 + -0.5 2,138,787 + -0.3 2,138,787 + +0.3 2,138,787 + +0.4 2,138,787 + +1.1 2,138,787 + +0.1 2,138,787 + -0.4 2,138,788 - -0.1 2,138,788 - -0.1 2,138,788 - +0.0 2,138,788 - +0.4 2,138,788 - +0.7 2,138,788 - -0.6 2,138,788 - +0.2 2,138,788 - -1.1 2,138,991 + Ga0059261_2038 0.37 +0.3 2,138,991 + Ga0059261_2038 0.37 -0.3 2,138,991 + Ga0059261_2038 0.37 -0.2 2,138,992 - Ga0059261_2038 0.37 +0.2 2,139,006 + Ga0059261_2038 0.39 +0.5 2,139,006 + Ga0059261_2038 0.39 -0.1 2,139,006 + Ga0059261_2038 0.39 -0.5 2,139,006 + Ga0059261_2038 0.39 +0.3 2,139,007 - Ga0059261_2038 0.39 -0.6 2,139,007 - Ga0059261_2038 0.39 +0.5 2,139,007 - Ga0059261_2038 0.39 +0.5 2,139,007 - Ga0059261_2038 0.39 +0.1 2,139,007 - Ga0059261_2038 0.39 +0.0 2,139,007 - Ga0059261_2038 0.39 -0.1 2,139,102 + Ga0059261_2038 0.54 +0.1 2,139,102 + Ga0059261_2038 0.54 -0.4 2,139,102 + Ga0059261_2038 0.54 +0.0 2,139,102 + Ga0059261_2038 0.54 -0.1 2,139,103 - Ga0059261_2038 0.54 +1.2 2,139,103 - Ga0059261_2038 0.54 -0.2 2,139,103 - Ga0059261_2038 0.54 -0.4 2,139,252 + Ga0059261_2038 0.78 +0.2 2,139,252 + Ga0059261_2038 0.78 -0.9 2,139,252 + Ga0059261_2038 0.78 +0.1 2,139,252 + Ga0059261_2038 0.78 -0.3 2,139,253 - Ga0059261_2038 0.79 -0.2 2,139,253 - Ga0059261_2038 0.79 +0.2 2,139,253 - Ga0059261_2038 0.79 -0.0 2,139,253 - Ga0059261_2038 0.79 +0.1 2,139,253 - Ga0059261_2038 0.79 -0.5 2,139,253 - Ga0059261_2038 0.79 +0.1 2,139,261 + Ga0059261_2038 0.80 +0.1 2,139,261 + Ga0059261_2038 0.80 -0.4 2,139,262 - Ga0059261_2038 0.80 +0.6 2,139,262 - Ga0059261_2038 0.80 -1.5 2,139,262 - Ga0059261_2038 0.80 -0.7 2,139,262 - Ga0059261_2038 0.80 +0.4 2,139,384 + +0.0 2,139,384 + +0.1 2,139,384 + -0.3 2,139,385 - +0.2 2,139,385 - -1.1
Or see this region's nucleotide sequence