Experiment: PYE with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03665 and CCNA_03666 are separated by 35 nucleotides CCNA_03666 and CCNA_03667 are separated by 15 nucleotides CCNA_03667 and CCNA_03668 are separated by 132 nucleotides CCNA_03668 and CCNA_03669 are separated by 411 nucleotides CCNA_03669 and CCNA_03670 are separated by 129 nucleotides
CCNA_03665: CCNA_03665 - DctA-YdbH superfamily protein, at 3,825,824 to 3,829,063
_03665
CCNA_03666: CCNA_03666 - YnbE-like lipoprotein, at 3,829,099 to 3,829,284
_03666
CCNA_03667: CCNA_03667 - hypothetical protein, at 3,829,300 to 3,829,656
_03667
CCNA_03668: CCNA_03668 - hypothetical protein, at 3,829,789 to 3,829,977
_03668
CCNA_03669: CCNA_03669 - outer membrane protein, at 3,830,389 to 3,830,733
_03669
CCNA_03670: CCNA_03670 - diacylglycerol kinase related protein, at 3,830,863 to 3,831,717
_03670
Position (kb)
3829
3830 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3828.792 kb on - strand at 3828.802 kb on - strand at 3828.845 kb on + strand at 3828.845 kb on + strand at 3828.855 kb on + strand at 3828.855 kb on + strand at 3828.855 kb on + strand at 3828.855 kb on + strand at 3828.863 kb on - strand at 3828.863 kb on - strand at 3828.874 kb on + strand at 3828.881 kb on + strand at 3828.887 kb on + strand at 3828.887 kb on + strand at 3828.945 kb on - strand at 3828.960 kb on + strand at 3829.026 kb on + strand at 3829.036 kb on + strand at 3829.041 kb on + strand at 3829.041 kb on + strand at 3829.041 kb on + strand at 3829.049 kb on - strand at 3829.052 kb on + strand at 3829.057 kb on + strand at 3829.065 kb on + strand at 3829.065 kb on - strand at 3829.065 kb on - strand at 3829.073 kb on - strand at 3829.124 kb on - strand, within CCNA_03666 at 3829.184 kb on - strand, within CCNA_03666 at 3829.236 kb on + strand, within CCNA_03666 at 3829.244 kb on - strand, within CCNA_03666 at 3829.254 kb on - strand, within CCNA_03666 at 3829.268 kb on + strand at 3829.268 kb on + strand at 3829.271 kb on - strand at 3829.276 kb on - strand at 3829.276 kb on - strand at 3829.278 kb on + strand at 3829.285 kb on + strand at 3829.286 kb on - strand at 3829.305 kb on - strand at 3829.311 kb on + strand at 3829.360 kb on + strand, within CCNA_03667 at 3829.360 kb on + strand, within CCNA_03667 at 3829.368 kb on - strand, within CCNA_03667 at 3829.368 kb on - strand, within CCNA_03667 at 3829.368 kb on - strand, within CCNA_03667 at 3829.368 kb on - strand, within CCNA_03667 at 3829.459 kb on + strand, within CCNA_03667 at 3829.477 kb on + strand, within CCNA_03667 at 3829.477 kb on + strand, within CCNA_03667 at 3829.495 kb on + strand, within CCNA_03667 at 3829.500 kb on + strand, within CCNA_03667 at 3829.508 kb on - strand, within CCNA_03667 at 3829.545 kb on + strand, within CCNA_03667 at 3829.557 kb on + strand, within CCNA_03667 at 3829.570 kb on + strand, within CCNA_03667 at 3829.575 kb on + strand, within CCNA_03667 at 3829.578 kb on - strand, within CCNA_03667 at 3829.578 kb on - strand, within CCNA_03667 at 3829.612 kb on + strand, within CCNA_03667 at 3829.615 kb on - strand, within CCNA_03667 at 3829.658 kb on + strand at 3829.677 kb on + strand at 3829.738 kb on + strand at 3829.752 kb on - strand at 3829.796 kb on - strand at 3829.801 kb on + strand at 3829.820 kb on - strand, within CCNA_03668 at 3829.822 kb on + strand, within CCNA_03668 at 3829.837 kb on + strand, within CCNA_03668 at 3829.837 kb on + strand, within CCNA_03668 at 3829.837 kb on + strand, within CCNA_03668 at 3829.837 kb on + strand, within CCNA_03668 at 3829.837 kb on + strand, within CCNA_03668 at 3829.837 kb on + strand, within CCNA_03668 at 3829.837 kb on + strand, within CCNA_03668 at 3829.845 kb on - strand, within CCNA_03668 at 3829.845 kb on - strand, within CCNA_03668 at 3829.845 kb on - strand, within CCNA_03668 at 3829.845 kb on - strand, within CCNA_03668 at 3829.845 kb on - strand, within CCNA_03668 at 3829.864 kb on + strand, within CCNA_03668 at 3829.892 kb on - strand, within CCNA_03668 at 3829.903 kb on + strand, within CCNA_03668 at 3829.911 kb on - strand, within CCNA_03668 at 3829.911 kb on - strand, within CCNA_03668 at 3829.970 kb on - strand at 3830.003 kb on - strand at 3830.040 kb on + strand at 3830.040 kb on + strand at 3830.040 kb on + strand at 3830.040 kb on + strand at 3830.040 kb on + strand at 3830.040 kb on + strand at 3830.048 kb on - strand at 3830.048 kb on - strand at 3830.071 kb on - strand at 3830.118 kb on + strand at 3830.142 kb on + strand at 3830.143 kb on - strand at 3830.152 kb on + strand at 3830.162 kb on + strand at 3830.162 kb on + strand at 3830.162 kb on + strand at 3830.162 kb on + strand at 3830.171 kb on - strand at 3830.184 kb on + strand at 3830.189 kb on + strand at 3830.272 kb on - strand at 3830.272 kb on - strand at 3830.272 kb on - strand at 3830.274 kb on + strand at 3830.274 kb on + strand at 3830.274 kb on + strand at 3830.274 kb on + strand at 3830.274 kb on + strand at 3830.274 kb on + strand at 3830.282 kb on - strand at 3830.282 kb on - strand at 3830.282 kb on - strand at 3830.299 kb on - strand at 3830.312 kb on - strand at 3830.334 kb on + strand at 3830.334 kb on + strand at 3830.334 kb on + strand at 3830.334 kb on + strand at 3830.334 kb on + strand at 3830.334 kb on + strand at 3830.342 kb on - strand at 3830.342 kb on - strand at 3830.342 kb on - strand at 3830.342 kb on - strand at 3830.342 kb on - strand at 3830.342 kb on - strand at 3830.342 kb on - strand at 3830.342 kb on - strand at 3830.342 kb on - strand at 3830.356 kb on - strand at 3830.393 kb on - strand at 3830.443 kb on + strand, within CCNA_03669 at 3830.474 kb on - strand, within CCNA_03669 at 3830.524 kb on + strand, within CCNA_03669 at 3830.532 kb on - strand, within CCNA_03669 at 3830.593 kb on + strand, within CCNA_03669 at 3830.661 kb on + strand, within CCNA_03669 at 3830.669 kb on - strand, within CCNA_03669 at 3830.697 kb on + strand, within CCNA_03669 at 3830.715 kb on - strand at 3830.734 kb on - strand at 3830.755 kb on + strand at 3830.755 kb on + strand at 3830.763 kb on - strand at 3830.790 kb on - strand at 3830.790 kb on - strand at 3830.810 kb on - strand at 3830.810 kb on - strand at 3830.812 kb on + strand at 3830.825 kb on + strand at 3830.825 kb on + strand at 3830.868 kb on + strand at 3830.881 kb on + strand at 3830.883 kb on + strand at 3830.894 kb on + strand at 3830.901 kb on - strand at 3830.901 kb on - strand at 3830.902 kb on - strand at 3830.908 kb on - strand at 3830.937 kb on + strand at 3830.945 kb on - strand at 3830.970 kb on - strand, within CCNA_03670 at 3830.971 kb on - strand, within CCNA_03670
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM remove 3,828,792 - +0.6 3,828,802 - -1.0 3,828,845 + +1.7 3,828,845 + +1.9 3,828,855 + -0.5 3,828,855 + -1.3 3,828,855 + -1.1 3,828,855 + +1.2 3,828,863 - -0.6 3,828,863 - +0.3 3,828,874 + +1.2 3,828,881 + -1.5 3,828,887 + -1.0 3,828,887 + -0.3 3,828,945 - -2.1 3,828,960 + -1.3 3,829,026 + +0.4 3,829,036 + -0.1 3,829,041 + -0.6 3,829,041 + -0.9 3,829,041 + +0.1 3,829,049 - -0.2 3,829,052 + +0.8 3,829,057 + -1.4 3,829,065 + -0.6 3,829,065 - +0.5 3,829,065 - +1.3 3,829,073 - -1.5 3,829,124 - CCNA_03666 0.13 +0.1 3,829,184 - CCNA_03666 0.46 -0.5 3,829,236 + CCNA_03666 0.74 +0.4 3,829,244 - CCNA_03666 0.78 +0.1 3,829,254 - CCNA_03666 0.83 +0.1 3,829,268 + -1.1 3,829,268 + +0.3 3,829,271 - +2.4 3,829,276 - +3.0 3,829,276 - +0.3 3,829,278 + +1.9 3,829,285 + -0.7 3,829,286 - -0.5 3,829,305 - -2.2 3,829,311 + +0.6 3,829,360 + CCNA_03667 0.17 -0.4 3,829,360 + CCNA_03667 0.17 +1.0 3,829,368 - CCNA_03667 0.19 -1.6 3,829,368 - CCNA_03667 0.19 -1.0 3,829,368 - CCNA_03667 0.19 -1.4 3,829,368 - CCNA_03667 0.19 +1.4 3,829,459 + CCNA_03667 0.45 +0.8 3,829,477 + CCNA_03667 0.50 -1.6 3,829,477 + CCNA_03667 0.50 -1.4 3,829,495 + CCNA_03667 0.55 +0.2 3,829,500 + CCNA_03667 0.56 +0.5 3,829,508 - CCNA_03667 0.58 +0.1 3,829,545 + CCNA_03667 0.69 -0.9 3,829,557 + CCNA_03667 0.72 +0.5 3,829,570 + CCNA_03667 0.76 -0.5 3,829,575 + CCNA_03667 0.77 -0.9 3,829,578 - CCNA_03667 0.78 -0.8 3,829,578 - CCNA_03667 0.78 -0.8 3,829,612 + CCNA_03667 0.87 -2.3 3,829,615 - CCNA_03667 0.88 +1.9 3,829,658 + -0.4 3,829,677 + -0.6 3,829,738 + +0.8 3,829,752 - +0.5 3,829,796 - -0.7 3,829,801 + -0.2 3,829,820 - CCNA_03668 0.16 -1.6 3,829,822 + CCNA_03668 0.17 -0.4 3,829,837 + CCNA_03668 0.25 +0.4 3,829,837 + CCNA_03668 0.25 -0.6 3,829,837 + CCNA_03668 0.25 -0.5 3,829,837 + CCNA_03668 0.25 +0.3 3,829,837 + CCNA_03668 0.25 -0.1 3,829,837 + CCNA_03668 0.25 -0.9 3,829,837 + CCNA_03668 0.25 -1.0 3,829,845 - CCNA_03668 0.30 +0.0 3,829,845 - CCNA_03668 0.30 -1.7 3,829,845 - CCNA_03668 0.30 -0.5 3,829,845 - CCNA_03668 0.30 -0.8 3,829,845 - CCNA_03668 0.30 -0.4 3,829,864 + CCNA_03668 0.40 -1.2 3,829,892 - CCNA_03668 0.54 +0.5 3,829,903 + CCNA_03668 0.60 -0.2 3,829,911 - CCNA_03668 0.65 -0.5 3,829,911 - CCNA_03668 0.65 +0.2 3,829,970 - +0.3 3,830,003 - -0.6 3,830,040 + -0.5 3,830,040 + -1.2 3,830,040 + -1.4 3,830,040 + -0.6 3,830,040 + +0.5 3,830,040 + -0.0 3,830,048 - +3.0 3,830,048 - -1.2 3,830,071 - +0.3 3,830,118 + -0.1 3,830,142 + -0.1 3,830,143 - +1.3 3,830,152 + -0.3 3,830,162 + +0.3 3,830,162 + +0.8 3,830,162 + +0.0 3,830,162 + -0.1 3,830,171 - +0.7 3,830,184 + -1.0 3,830,189 + +0.7 3,830,272 - -0.6 3,830,272 - -0.6 3,830,272 - -1.2 3,830,274 + -1.2 3,830,274 + -1.0 3,830,274 + -0.8 3,830,274 + -0.4 3,830,274 + -0.9 3,830,274 + +0.2 3,830,282 - -0.4 3,830,282 - +0.0 3,830,282 - +0.5 3,830,299 - -1.7 3,830,312 - -1.1 3,830,334 + +1.0 3,830,334 + -0.4 3,830,334 + -0.4 3,830,334 + -1.3 3,830,334 + +1.1 3,830,334 + -2.4 3,830,342 - -0.5 3,830,342 - +1.4 3,830,342 - -0.9 3,830,342 - -2.2 3,830,342 - -1.5 3,830,342 - +0.6 3,830,342 - -0.5 3,830,342 - -0.6 3,830,342 - -0.1 3,830,356 - -1.2 3,830,393 - -0.6 3,830,443 + CCNA_03669 0.16 -0.4 3,830,474 - CCNA_03669 0.25 -1.0 3,830,524 + CCNA_03669 0.39 -1.8 3,830,532 - CCNA_03669 0.41 -1.0 3,830,593 + CCNA_03669 0.59 -0.1 3,830,661 + CCNA_03669 0.79 +1.2 3,830,669 - CCNA_03669 0.81 -1.7 3,830,697 + CCNA_03669 0.89 -0.3 3,830,715 - -1.3 3,830,734 - +1.2 3,830,755 + -1.4 3,830,755 + +2.7 3,830,763 - +1.8 3,830,790 - -2.1 3,830,790 - -0.2 3,830,810 - -0.6 3,830,810 - +0.7 3,830,812 + -1.3 3,830,825 + +0.2 3,830,825 + -1.2 3,830,868 + -0.9 3,830,881 + -0.6 3,830,883 + -0.3 3,830,894 + +3.0 3,830,901 - -0.2 3,830,901 - -1.9 3,830,902 - -0.1 3,830,908 - -0.4 3,830,937 + -1.0 3,830,945 - -0.9 3,830,970 - CCNA_03670 0.13 -0.3 3,830,971 - CCNA_03670 0.13 -0.5
Or see this region's nucleotide sequence