Experiment: PYE with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03195 and CCNA_03196 are separated by 161 nucleotides CCNA_03196 and CCNA_03197 are separated by 94 nucleotides CCNA_03197 and CCNA_03198 are separated by 97 nucleotides
CCNA_03195: CCNA_03195 - RNA polymerase sigma factor RpoH, at 3,355,603 to 3,356,499
_03195
CCNA_03196: CCNA_03196 - hypothetical protein, at 3,356,661 to 3,356,855
_03196
CCNA_03197: CCNA_03197 - alpha/beta hydrolase family protein, at 3,356,950 to 3,357,684
_03197
CCNA_03198: CCNA_03198 - two-component response regulator, at 3,357,782 to 3,358,591
_03198
Position (kb)
3356
3357 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3356.448 kb on + strand at 3356.544 kb on - strand at 3356.579 kb on - strand at 3356.616 kb on - strand at 3356.649 kb on + strand at 3356.649 kb on + strand at 3356.657 kb on - strand at 3356.657 kb on - strand at 3356.804 kb on + strand, within CCNA_03196 at 3356.804 kb on + strand, within CCNA_03196 at 3356.804 kb on + strand, within CCNA_03196 at 3356.804 kb on + strand, within CCNA_03196 at 3356.804 kb on + strand, within CCNA_03196 at 3356.804 kb on + strand, within CCNA_03196 at 3356.804 kb on + strand, within CCNA_03196 at 3356.816 kb on + strand, within CCNA_03196 at 3356.883 kb on - strand at 3356.906 kb on - strand at 3356.965 kb on + strand at 3356.973 kb on - strand at 3356.975 kb on + strand at 3356.994 kb on - strand at 3357.017 kb on - strand at 3357.032 kb on - strand, within CCNA_03197 at 3357.032 kb on - strand, within CCNA_03197 at 3357.032 kb on - strand, within CCNA_03197 at 3357.039 kb on + strand, within CCNA_03197 at 3357.059 kb on - strand, within CCNA_03197 at 3357.126 kb on + strand, within CCNA_03197 at 3357.143 kb on + strand, within CCNA_03197 at 3357.181 kb on + strand, within CCNA_03197 at 3357.181 kb on + strand, within CCNA_03197 at 3357.189 kb on - strand, within CCNA_03197 at 3357.189 kb on - strand, within CCNA_03197 at 3357.198 kb on + strand, within CCNA_03197 at 3357.203 kb on + strand, within CCNA_03197 at 3357.211 kb on - strand, within CCNA_03197 at 3357.221 kb on + strand, within CCNA_03197 at 3357.239 kb on + strand, within CCNA_03197 at 3357.239 kb on - strand, within CCNA_03197 at 3357.255 kb on - strand, within CCNA_03197 at 3357.271 kb on + strand, within CCNA_03197 at 3357.271 kb on + strand, within CCNA_03197 at 3357.276 kb on + strand, within CCNA_03197 at 3357.277 kb on - strand, within CCNA_03197 at 3357.279 kb on - strand, within CCNA_03197 at 3357.296 kb on - strand, within CCNA_03197 at 3357.296 kb on - strand, within CCNA_03197 at 3357.306 kb on + strand, within CCNA_03197 at 3357.318 kb on + strand, within CCNA_03197 at 3357.406 kb on + strand, within CCNA_03197 at 3357.446 kb on + strand, within CCNA_03197 at 3357.525 kb on + strand, within CCNA_03197 at 3357.525 kb on + strand, within CCNA_03197 at 3357.533 kb on - strand, within CCNA_03197 at 3357.533 kb on - strand, within CCNA_03197 at 3357.554 kb on - strand, within CCNA_03197 at 3357.562 kb on + strand, within CCNA_03197 at 3357.570 kb on - strand, within CCNA_03197 at 3357.609 kb on - strand, within CCNA_03197 at 3357.614 kb on - strand at 3357.619 kb on - strand at 3357.660 kb on + strand at 3357.665 kb on + strand at 3357.740 kb on + strand at 3357.787 kb on - strand at 3357.802 kb on + strand at 3357.802 kb on - strand at 3357.820 kb on - strand at 3357.837 kb on + strand at 3357.837 kb on + strand at 3357.845 kb on - strand at 3357.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM remove 3,356,448 + -0.4 3,356,544 - -0.7 3,356,579 - +2.0 3,356,616 - +0.9 3,356,649 + -0.4 3,356,649 + +0.5 3,356,657 - -0.3 3,356,657 - +0.6 3,356,804 + CCNA_03196 0.73 -2.2 3,356,804 + CCNA_03196 0.73 -1.5 3,356,804 + CCNA_03196 0.73 -0.3 3,356,804 + CCNA_03196 0.73 -1.2 3,356,804 + CCNA_03196 0.73 -0.6 3,356,804 + CCNA_03196 0.73 -0.8 3,356,804 + CCNA_03196 0.73 -1.6 3,356,816 + CCNA_03196 0.79 +1.0 3,356,883 - -0.1 3,356,906 - -0.3 3,356,965 + +0.7 3,356,973 - -1.1 3,356,975 + -1.3 3,356,994 - -1.5 3,357,017 - -0.6 3,357,032 - CCNA_03197 0.11 -0.6 3,357,032 - CCNA_03197 0.11 +2.3 3,357,032 - CCNA_03197 0.11 -0.5 3,357,039 + CCNA_03197 0.12 +1.1 3,357,059 - CCNA_03197 0.15 -1.0 3,357,126 + CCNA_03197 0.24 +0.1 3,357,143 + CCNA_03197 0.26 -1.7 3,357,181 + CCNA_03197 0.31 +1.3 3,357,181 + CCNA_03197 0.31 +0.4 3,357,189 - CCNA_03197 0.33 -0.6 3,357,189 - CCNA_03197 0.33 +0.5 3,357,198 + CCNA_03197 0.34 -1.0 3,357,203 + CCNA_03197 0.34 +0.5 3,357,211 - CCNA_03197 0.36 -1.7 3,357,221 + CCNA_03197 0.37 +0.1 3,357,239 + CCNA_03197 0.39 +0.6 3,357,239 - CCNA_03197 0.39 +1.8 3,357,255 - CCNA_03197 0.41 +0.6 3,357,271 + CCNA_03197 0.44 -0.7 3,357,271 + CCNA_03197 0.44 +0.3 3,357,276 + CCNA_03197 0.44 -0.2 3,357,277 - CCNA_03197 0.44 +0.6 3,357,279 - CCNA_03197 0.45 +0.3 3,357,296 - CCNA_03197 0.47 -0.6 3,357,296 - CCNA_03197 0.47 +0.8 3,357,306 + CCNA_03197 0.48 +0.6 3,357,318 + CCNA_03197 0.50 -0.1 3,357,406 + CCNA_03197 0.62 -0.9 3,357,446 + CCNA_03197 0.67 -2.7 3,357,525 + CCNA_03197 0.78 -0.9 3,357,525 + CCNA_03197 0.78 +0.3 3,357,533 - CCNA_03197 0.79 -0.2 3,357,533 - CCNA_03197 0.79 -0.6 3,357,554 - CCNA_03197 0.82 +1.6 3,357,562 + CCNA_03197 0.83 +1.8 3,357,570 - CCNA_03197 0.84 +1.1 3,357,609 - CCNA_03197 0.90 -0.7 3,357,614 - -0.7 3,357,619 - -0.4 3,357,660 + -0.1 3,357,665 + +3.7 3,357,740 + -0.7 3,357,787 - -0.9 3,357,802 + -0.7 3,357,802 - +0.4 3,357,820 - -1.0 3,357,837 + +0.1 3,357,837 + +1.8 3,357,845 - -0.4 3,357,852 + -0.1
Or see this region's nucleotide sequence