Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03196

Experiment: PYE with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03195 and CCNA_03196 are separated by 161 nucleotidesCCNA_03196 and CCNA_03197 are separated by 94 nucleotidesCCNA_03197 and CCNA_03198 are separated by 97 nucleotides CCNA_03195: CCNA_03195 - RNA polymerase sigma factor RpoH, at 3,355,603 to 3,356,499 _03195 CCNA_03196: CCNA_03196 - hypothetical protein, at 3,356,661 to 3,356,855 _03196 CCNA_03197: CCNA_03197 - alpha/beta hydrolase family protein, at 3,356,950 to 3,357,684 _03197 CCNA_03198: CCNA_03198 - two-component response regulator, at 3,357,782 to 3,358,591 _03198 Position (kb) 3356 3357Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3356.448 kb on + strandat 3356.544 kb on - strandat 3356.579 kb on - strandat 3356.616 kb on - strandat 3356.649 kb on + strandat 3356.649 kb on + strandat 3356.657 kb on - strandat 3356.657 kb on - strandat 3356.804 kb on + strand, within CCNA_03196at 3356.804 kb on + strand, within CCNA_03196at 3356.804 kb on + strand, within CCNA_03196at 3356.804 kb on + strand, within CCNA_03196at 3356.804 kb on + strand, within CCNA_03196at 3356.804 kb on + strand, within CCNA_03196at 3356.804 kb on + strand, within CCNA_03196at 3356.816 kb on + strand, within CCNA_03196at 3356.883 kb on - strandat 3356.906 kb on - strandat 3356.965 kb on + strandat 3356.973 kb on - strandat 3356.975 kb on + strandat 3356.994 kb on - strandat 3357.017 kb on - strandat 3357.032 kb on - strand, within CCNA_03197at 3357.032 kb on - strand, within CCNA_03197at 3357.032 kb on - strand, within CCNA_03197at 3357.039 kb on + strand, within CCNA_03197at 3357.059 kb on - strand, within CCNA_03197at 3357.126 kb on + strand, within CCNA_03197at 3357.143 kb on + strand, within CCNA_03197at 3357.181 kb on + strand, within CCNA_03197at 3357.181 kb on + strand, within CCNA_03197at 3357.189 kb on - strand, within CCNA_03197at 3357.189 kb on - strand, within CCNA_03197at 3357.198 kb on + strand, within CCNA_03197at 3357.203 kb on + strand, within CCNA_03197at 3357.211 kb on - strand, within CCNA_03197at 3357.221 kb on + strand, within CCNA_03197at 3357.239 kb on + strand, within CCNA_03197at 3357.239 kb on - strand, within CCNA_03197at 3357.255 kb on - strand, within CCNA_03197at 3357.271 kb on + strand, within CCNA_03197at 3357.271 kb on + strand, within CCNA_03197at 3357.276 kb on + strand, within CCNA_03197at 3357.277 kb on - strand, within CCNA_03197at 3357.279 kb on - strand, within CCNA_03197at 3357.296 kb on - strand, within CCNA_03197at 3357.296 kb on - strand, within CCNA_03197at 3357.306 kb on + strand, within CCNA_03197at 3357.318 kb on + strand, within CCNA_03197at 3357.406 kb on + strand, within CCNA_03197at 3357.446 kb on + strand, within CCNA_03197at 3357.525 kb on + strand, within CCNA_03197at 3357.525 kb on + strand, within CCNA_03197at 3357.533 kb on - strand, within CCNA_03197at 3357.533 kb on - strand, within CCNA_03197at 3357.554 kb on - strand, within CCNA_03197at 3357.562 kb on + strand, within CCNA_03197at 3357.570 kb on - strand, within CCNA_03197at 3357.609 kb on - strand, within CCNA_03197at 3357.614 kb on - strandat 3357.619 kb on - strandat 3357.660 kb on + strandat 3357.665 kb on + strandat 3357.740 kb on + strandat 3357.787 kb on - strandat 3357.802 kb on + strandat 3357.802 kb on - strandat 3357.820 kb on - strandat 3357.837 kb on + strandat 3357.837 kb on + strandat 3357.845 kb on - strandat 3357.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM
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3,356,448 + -0.4
3,356,544 - -0.7
3,356,579 - +2.0
3,356,616 - +0.9
3,356,649 + -0.4
3,356,649 + +0.5
3,356,657 - -0.3
3,356,657 - +0.6
3,356,804 + CCNA_03196 0.73 -2.2
3,356,804 + CCNA_03196 0.73 -1.5
3,356,804 + CCNA_03196 0.73 -0.3
3,356,804 + CCNA_03196 0.73 -1.2
3,356,804 + CCNA_03196 0.73 -0.6
3,356,804 + CCNA_03196 0.73 -0.8
3,356,804 + CCNA_03196 0.73 -1.6
3,356,816 + CCNA_03196 0.79 +1.0
3,356,883 - -0.1
3,356,906 - -0.3
3,356,965 + +0.7
3,356,973 - -1.1
3,356,975 + -1.3
3,356,994 - -1.5
3,357,017 - -0.6
3,357,032 - CCNA_03197 0.11 -0.6
3,357,032 - CCNA_03197 0.11 +2.3
3,357,032 - CCNA_03197 0.11 -0.5
3,357,039 + CCNA_03197 0.12 +1.1
3,357,059 - CCNA_03197 0.15 -1.0
3,357,126 + CCNA_03197 0.24 +0.1
3,357,143 + CCNA_03197 0.26 -1.7
3,357,181 + CCNA_03197 0.31 +1.3
3,357,181 + CCNA_03197 0.31 +0.4
3,357,189 - CCNA_03197 0.33 -0.6
3,357,189 - CCNA_03197 0.33 +0.5
3,357,198 + CCNA_03197 0.34 -1.0
3,357,203 + CCNA_03197 0.34 +0.5
3,357,211 - CCNA_03197 0.36 -1.7
3,357,221 + CCNA_03197 0.37 +0.1
3,357,239 + CCNA_03197 0.39 +0.6
3,357,239 - CCNA_03197 0.39 +1.8
3,357,255 - CCNA_03197 0.41 +0.6
3,357,271 + CCNA_03197 0.44 -0.7
3,357,271 + CCNA_03197 0.44 +0.3
3,357,276 + CCNA_03197 0.44 -0.2
3,357,277 - CCNA_03197 0.44 +0.6
3,357,279 - CCNA_03197 0.45 +0.3
3,357,296 - CCNA_03197 0.47 -0.6
3,357,296 - CCNA_03197 0.47 +0.8
3,357,306 + CCNA_03197 0.48 +0.6
3,357,318 + CCNA_03197 0.50 -0.1
3,357,406 + CCNA_03197 0.62 -0.9
3,357,446 + CCNA_03197 0.67 -2.7
3,357,525 + CCNA_03197 0.78 -0.9
3,357,525 + CCNA_03197 0.78 +0.3
3,357,533 - CCNA_03197 0.79 -0.2
3,357,533 - CCNA_03197 0.79 -0.6
3,357,554 - CCNA_03197 0.82 +1.6
3,357,562 + CCNA_03197 0.83 +1.8
3,357,570 - CCNA_03197 0.84 +1.1
3,357,609 - CCNA_03197 0.90 -0.7
3,357,614 - -0.7
3,357,619 - -0.4
3,357,660 + -0.1
3,357,665 + +3.7
3,357,740 + -0.7
3,357,787 - -0.9
3,357,802 + -0.7
3,357,802 - +0.4
3,357,820 - -1.0
3,357,837 + +0.1
3,357,837 + +1.8
3,357,845 - -0.4
3,357,852 + -0.1

Or see this region's nucleotide sequence