Experiment: PYE with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01923 and CCNA_01924 are separated by 74 nucleotides CCNA_01924 and CCNA_01925 are separated by 32 nucleotides
CCNA_01923: CCNA_01923 - ATP-dependent RNA helicase, at 2,068,157 to 2,069,710
_01923
CCNA_01924: CCNA_01924 - capsular polysaccharide biosynthesis protein, at 2,069,785 to 2,070,936
_01924
CCNA_01925: CCNA_01925 - coniferyl aldehyde dehydrogenase, at 2,070,969 to 2,072,426
_01925
Position (kb)
2069
2070
2071 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2068.824 kb on - strand, within CCNA_01923 at 2068.836 kb on + strand, within CCNA_01923 at 2068.850 kb on + strand, within CCNA_01923 at 2068.857 kb on - strand, within CCNA_01923 at 2068.893 kb on - strand, within CCNA_01923 at 2068.926 kb on - strand, within CCNA_01923 at 2068.926 kb on - strand, within CCNA_01923 at 2068.958 kb on + strand, within CCNA_01923 at 2068.987 kb on + strand, within CCNA_01923 at 2069.011 kb on + strand, within CCNA_01923 at 2069.011 kb on + strand, within CCNA_01923 at 2069.011 kb on + strand, within CCNA_01923 at 2069.115 kb on + strand, within CCNA_01923 at 2069.135 kb on + strand, within CCNA_01923 at 2069.190 kb on - strand, within CCNA_01923 at 2069.194 kb on - strand, within CCNA_01923 at 2069.201 kb on - strand, within CCNA_01923 at 2069.233 kb on - strand, within CCNA_01923 at 2069.290 kb on + strand, within CCNA_01923 at 2069.311 kb on + strand, within CCNA_01923 at 2069.319 kb on - strand, within CCNA_01923 at 2069.478 kb on - strand, within CCNA_01923 at 2069.532 kb on - strand, within CCNA_01923 at 2069.538 kb on + strand, within CCNA_01923 at 2069.546 kb on - strand, within CCNA_01923 at 2069.607 kb on + strand at 2069.617 kb on - strand at 2069.626 kb on - strand at 2069.700 kb on + strand at 2069.708 kb on - strand at 2069.773 kb on + strand at 2069.778 kb on + strand at 2069.803 kb on - strand at 2069.804 kb on + strand at 2069.812 kb on - strand at 2069.861 kb on - strand at 2069.883 kb on + strand at 2069.888 kb on + strand at 2069.888 kb on + strand at 2069.891 kb on - strand at 2069.893 kb on + strand at 2069.893 kb on + strand at 2069.893 kb on + strand at 2069.893 kb on + strand at 2069.901 kb on - strand, within CCNA_01924 at 2069.901 kb on - strand, within CCNA_01924 at 2069.960 kb on + strand, within CCNA_01924 at 2069.960 kb on + strand, within CCNA_01924 at 2069.960 kb on - strand, within CCNA_01924 at 2069.976 kb on + strand, within CCNA_01924 at 2069.991 kb on + strand, within CCNA_01924 at 2069.999 kb on + strand, within CCNA_01924 at 2070.022 kb on + strand, within CCNA_01924 at 2070.098 kb on + strand, within CCNA_01924 at 2070.162 kb on + strand, within CCNA_01924 at 2070.195 kb on + strand, within CCNA_01924 at 2070.198 kb on - strand, within CCNA_01924 at 2070.286 kb on - strand, within CCNA_01924 at 2070.296 kb on - strand, within CCNA_01924 at 2070.309 kb on - strand, within CCNA_01924 at 2070.361 kb on + strand, within CCNA_01924 at 2070.370 kb on - strand, within CCNA_01924 at 2070.370 kb on - strand, within CCNA_01924 at 2070.398 kb on - strand, within CCNA_01924 at 2070.425 kb on + strand, within CCNA_01924 at 2070.442 kb on - strand, within CCNA_01924 at 2070.444 kb on + strand, within CCNA_01924 at 2070.456 kb on + strand, within CCNA_01924 at 2070.466 kb on - strand, within CCNA_01924 at 2070.474 kb on - strand, within CCNA_01924 at 2070.493 kb on + strand, within CCNA_01924 at 2070.506 kb on + strand, within CCNA_01924 at 2070.512 kb on + strand, within CCNA_01924 at 2070.512 kb on + strand, within CCNA_01924 at 2070.522 kb on + strand, within CCNA_01924 at 2070.584 kb on + strand, within CCNA_01924 at 2070.592 kb on - strand, within CCNA_01924 at 2070.601 kb on - strand, within CCNA_01924 at 2070.603 kb on + strand, within CCNA_01924 at 2070.603 kb on + strand, within CCNA_01924 at 2070.611 kb on - strand, within CCNA_01924 at 2070.624 kb on - strand, within CCNA_01924 at 2070.624 kb on - strand, within CCNA_01924 at 2070.634 kb on - strand, within CCNA_01924 at 2070.707 kb on - strand, within CCNA_01924 at 2070.707 kb on - strand, within CCNA_01924 at 2070.829 kb on + strand at 2070.837 kb on - strand at 2070.837 kb on - strand at 2070.839 kb on + strand at 2070.849 kb on + strand at 2070.880 kb on - strand at 2070.932 kb on + strand at 2070.932 kb on + strand at 2070.932 kb on + strand at 2070.932 kb on + strand at 2070.940 kb on - strand at 2070.940 kb on - strand at 2070.950 kb on - strand at 2070.981 kb on - strand at 2070.981 kb on - strand at 2071.015 kb on - strand at 2071.017 kb on + strand at 2071.050 kb on - strand at 2071.080 kb on - strand at 2071.080 kb on - strand at 2071.080 kb on - strand at 2071.080 kb on - strand at 2071.141 kb on - strand, within CCNA_01925 at 2071.141 kb on - strand, within CCNA_01925 at 2071.166 kb on - strand, within CCNA_01925 at 2071.166 kb on - strand, within CCNA_01925 at 2071.166 kb on - strand, within CCNA_01925 at 2071.166 kb on - strand, within CCNA_01925 at 2071.252 kb on + strand, within CCNA_01925 at 2071.252 kb on + strand, within CCNA_01925 at 2071.254 kb on - strand, within CCNA_01925 at 2071.254 kb on - strand, within CCNA_01925 at 2071.254 kb on - strand, within CCNA_01925 at 2071.283 kb on - strand, within CCNA_01925 at 2071.305 kb on + strand, within CCNA_01925 at 2071.314 kb on + strand, within CCNA_01925 at 2071.320 kb on - strand, within CCNA_01925 at 2071.320 kb on - strand, within CCNA_01925 at 2071.320 kb on - strand, within CCNA_01925 at 2071.320 kb on - strand, within CCNA_01925 at 2071.321 kb on + strand, within CCNA_01925 at 2071.334 kb on + strand, within CCNA_01925 at 2071.334 kb on + strand, within CCNA_01925 at 2071.342 kb on - strand, within CCNA_01925 at 2071.350 kb on - strand at 2071.372 kb on - strand, within CCNA_01925 at 2071.388 kb on + strand, within CCNA_01925 at 2071.457 kb on - strand, within CCNA_01925 at 2071.476 kb on - strand, within CCNA_01925 at 2071.476 kb on - strand, within CCNA_01925 at 2071.476 kb on - strand, within CCNA_01925 at 2071.476 kb on - strand, within CCNA_01925 at 2071.503 kb on - strand, within CCNA_01925 at 2071.503 kb on - strand, within CCNA_01925 at 2071.510 kb on + strand, within CCNA_01925 at 2071.539 kb on - strand, within CCNA_01925 at 2071.581 kb on + strand, within CCNA_01925 at 2071.589 kb on - strand, within CCNA_01925 at 2071.628 kb on + strand, within CCNA_01925 at 2071.631 kb on - strand, within CCNA_01925 at 2071.636 kb on - strand, within CCNA_01925 at 2071.636 kb on - strand, within CCNA_01925 at 2071.643 kb on - strand, within CCNA_01925 at 2071.645 kb on + strand, within CCNA_01925 at 2071.650 kb on + strand, within CCNA_01925 at 2071.650 kb on + strand, within CCNA_01925 at 2071.653 kb on - strand, within CCNA_01925 at 2071.662 kb on + strand, within CCNA_01925 at 2071.706 kb on + strand, within CCNA_01925 at 2071.732 kb on - strand, within CCNA_01925 at 2071.748 kb on + strand, within CCNA_01925 at 2071.756 kb on - strand, within CCNA_01925 at 2071.756 kb on - strand, within CCNA_01925 at 2071.763 kb on + strand, within CCNA_01925 at 2071.770 kb on + strand, within CCNA_01925 at 2071.824 kb on + strand, within CCNA_01925 at 2071.826 kb on - strand, within CCNA_01925 at 2071.849 kb on + strand, within CCNA_01925 at 2071.854 kb on + strand, within CCNA_01925 at 2071.910 kb on + strand, within CCNA_01925 at 2071.924 kb on + strand, within CCNA_01925
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM remove 2,068,824 - CCNA_01923 0.43 +0.0 2,068,836 + CCNA_01923 0.44 +0.2 2,068,850 + CCNA_01923 0.45 +2.1 2,068,857 - CCNA_01923 0.45 -0.5 2,068,893 - CCNA_01923 0.47 -0.4 2,068,926 - CCNA_01923 0.49 -0.9 2,068,926 - CCNA_01923 0.49 +2.2 2,068,958 + CCNA_01923 0.52 -0.0 2,068,987 + CCNA_01923 0.53 +0.3 2,069,011 + CCNA_01923 0.55 +0.0 2,069,011 + CCNA_01923 0.55 +0.2 2,069,011 + CCNA_01923 0.55 -0.6 2,069,115 + CCNA_01923 0.62 +0.6 2,069,135 + CCNA_01923 0.63 -0.1 2,069,190 - CCNA_01923 0.66 -0.1 2,069,194 - CCNA_01923 0.67 +0.7 2,069,201 - CCNA_01923 0.67 -0.3 2,069,233 - CCNA_01923 0.69 -0.8 2,069,290 + CCNA_01923 0.73 +0.8 2,069,311 + CCNA_01923 0.74 +0.4 2,069,319 - CCNA_01923 0.75 +1.5 2,069,478 - CCNA_01923 0.85 +1.0 2,069,532 - CCNA_01923 0.88 -0.1 2,069,538 + CCNA_01923 0.89 -0.7 2,069,546 - CCNA_01923 0.89 -0.5 2,069,607 + +0.6 2,069,617 - +0.1 2,069,626 - +1.7 2,069,700 + +0.1 2,069,708 - +0.8 2,069,773 + -0.6 2,069,778 + +1.1 2,069,803 - +1.3 2,069,804 + +0.8 2,069,812 - +0.5 2,069,861 - +1.3 2,069,883 + -0.6 2,069,888 + -1.2 2,069,888 + +0.4 2,069,891 - +0.2 2,069,893 + -0.3 2,069,893 + -0.7 2,069,893 + -1.1 2,069,893 + -0.1 2,069,901 - CCNA_01924 0.10 -1.3 2,069,901 - CCNA_01924 0.10 -0.9 2,069,960 + CCNA_01924 0.15 -1.0 2,069,960 + CCNA_01924 0.15 +0.6 2,069,960 - CCNA_01924 0.15 -0.2 2,069,976 + CCNA_01924 0.17 -0.7 2,069,991 + CCNA_01924 0.18 -1.2 2,069,999 + CCNA_01924 0.19 -0.5 2,070,022 + CCNA_01924 0.21 -0.2 2,070,098 + CCNA_01924 0.27 -0.7 2,070,162 + CCNA_01924 0.33 +0.4 2,070,195 + CCNA_01924 0.36 +0.7 2,070,198 - CCNA_01924 0.36 -1.0 2,070,286 - CCNA_01924 0.43 -0.4 2,070,296 - CCNA_01924 0.44 -1.3 2,070,309 - CCNA_01924 0.45 -0.2 2,070,361 + CCNA_01924 0.50 -1.4 2,070,370 - CCNA_01924 0.51 -1.3 2,070,370 - CCNA_01924 0.51 -1.7 2,070,398 - CCNA_01924 0.53 +0.2 2,070,425 + CCNA_01924 0.56 -1.1 2,070,442 - CCNA_01924 0.57 +0.2 2,070,444 + CCNA_01924 0.57 -2.2 2,070,456 + CCNA_01924 0.58 -1.3 2,070,466 - CCNA_01924 0.59 -1.3 2,070,474 - CCNA_01924 0.60 -0.8 2,070,493 + CCNA_01924 0.61 +0.1 2,070,506 + CCNA_01924 0.63 +1.3 2,070,512 + CCNA_01924 0.63 -2.1 2,070,512 + CCNA_01924 0.63 +1.7 2,070,522 + CCNA_01924 0.64 -1.3 2,070,584 + CCNA_01924 0.69 -0.3 2,070,592 - CCNA_01924 0.70 +0.1 2,070,601 - CCNA_01924 0.71 -1.3 2,070,603 + CCNA_01924 0.71 +0.7 2,070,603 + CCNA_01924 0.71 -0.1 2,070,611 - CCNA_01924 0.72 -0.3 2,070,624 - CCNA_01924 0.73 +0.8 2,070,624 - CCNA_01924 0.73 +0.6 2,070,634 - CCNA_01924 0.74 +0.1 2,070,707 - CCNA_01924 0.80 +0.4 2,070,707 - CCNA_01924 0.80 -1.6 2,070,829 + +1.2 2,070,837 - +0.7 2,070,837 - -0.6 2,070,839 + +0.2 2,070,849 + +0.5 2,070,880 - -2.0 2,070,932 + +1.5 2,070,932 + -0.8 2,070,932 + -0.5 2,070,932 + +2.1 2,070,940 - +1.5 2,070,940 - -1.1 2,070,950 - -0.8 2,070,981 - -0.5 2,070,981 - +0.4 2,071,015 - -1.1 2,071,017 + +0.4 2,071,050 - -1.6 2,071,080 - -0.1 2,071,080 - -1.1 2,071,080 - -2.0 2,071,080 - -0.2 2,071,141 - CCNA_01925 0.12 -0.1 2,071,141 - CCNA_01925 0.12 -0.9 2,071,166 - CCNA_01925 0.14 +1.1 2,071,166 - CCNA_01925 0.14 +0.6 2,071,166 - CCNA_01925 0.14 +1.1 2,071,166 - CCNA_01925 0.14 -1.8 2,071,252 + CCNA_01925 0.19 +0.5 2,071,252 + CCNA_01925 0.19 -1.4 2,071,254 - CCNA_01925 0.20 -0.8 2,071,254 - CCNA_01925 0.20 -0.2 2,071,254 - CCNA_01925 0.20 +1.4 2,071,283 - CCNA_01925 0.22 -1.8 2,071,305 + CCNA_01925 0.23 +0.2 2,071,314 + CCNA_01925 0.24 +0.2 2,071,320 - CCNA_01925 0.24 +1.1 2,071,320 - CCNA_01925 0.24 +0.4 2,071,320 - CCNA_01925 0.24 -1.1 2,071,320 - CCNA_01925 0.24 -0.3 2,071,321 + CCNA_01925 0.24 +0.2 2,071,334 + CCNA_01925 0.25 +1.5 2,071,334 + CCNA_01925 0.25 -0.1 2,071,342 - CCNA_01925 0.26 -1.5 2,071,350 - +2.1 2,071,372 - CCNA_01925 0.28 +0.1 2,071,388 + CCNA_01925 0.29 +0.5 2,071,457 - CCNA_01925 0.33 -2.2 2,071,476 - CCNA_01925 0.35 +0.2 2,071,476 - CCNA_01925 0.35 +1.2 2,071,476 - CCNA_01925 0.35 +2.1 2,071,476 - CCNA_01925 0.35 +0.2 2,071,503 - CCNA_01925 0.37 -1.1 2,071,503 - CCNA_01925 0.37 +1.2 2,071,510 + CCNA_01925 0.37 -1.5 2,071,539 - CCNA_01925 0.39 -0.4 2,071,581 + CCNA_01925 0.42 -0.9 2,071,589 - CCNA_01925 0.43 +0.2 2,071,628 + CCNA_01925 0.45 +0.2 2,071,631 - CCNA_01925 0.45 +0.9 2,071,636 - CCNA_01925 0.46 -1.0 2,071,636 - CCNA_01925 0.46 -0.4 2,071,643 - CCNA_01925 0.46 -1.9 2,071,645 + CCNA_01925 0.46 -0.9 2,071,650 + CCNA_01925 0.47 -1.3 2,071,650 + CCNA_01925 0.47 +0.2 2,071,653 - CCNA_01925 0.47 +1.1 2,071,662 + CCNA_01925 0.48 +0.3 2,071,706 + CCNA_01925 0.51 -1.2 2,071,732 - CCNA_01925 0.52 +1.1 2,071,748 + CCNA_01925 0.53 -1.0 2,071,756 - CCNA_01925 0.54 -1.9 2,071,756 - CCNA_01925 0.54 +0.4 2,071,763 + CCNA_01925 0.54 +1.5 2,071,770 + CCNA_01925 0.55 -0.9 2,071,824 + CCNA_01925 0.59 +3.1 2,071,826 - CCNA_01925 0.59 -0.3 2,071,849 + CCNA_01925 0.60 -0.9 2,071,854 + CCNA_01925 0.61 -0.1 2,071,910 + CCNA_01925 0.65 -1.2 2,071,924 + CCNA_01925 0.66 +1.7
Or see this region's nucleotide sequence