Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01125

Experiment: PYE with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01124 and CCNA_01125 are separated by 364 nucleotidesCCNA_01125 and CCNA_03890 are separated by 381 nucleotides CCNA_01124: CCNA_01124 - histidinol-phosphate aminotransferase, at 1,229,340 to 1,230,383 _01124 CCNA_01125: CCNA_01125 - hypothetical protein, at 1,230,748 to 1,231,227 _01125 CCNA_03890: CCNA_03890 - hypothetical protein, at 1,231,609 to 1,232,988 _03890 Position (kb) 1230 1231 1232Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1229.758 kb on + strand, within CCNA_01124at 1229.766 kb on - strand, within CCNA_01124at 1229.766 kb on - strand, within CCNA_01124at 1229.773 kb on - strand, within CCNA_01124at 1229.775 kb on + strand, within CCNA_01124at 1229.816 kb on - strand, within CCNA_01124at 1229.817 kb on - strand, within CCNA_01124at 1229.864 kb on + strand, within CCNA_01124at 1229.872 kb on - strand, within CCNA_01124at 1229.872 kb on - strand, within CCNA_01124at 1229.872 kb on - strand, within CCNA_01124at 1229.891 kb on + strand, within CCNA_01124at 1229.899 kb on - strand, within CCNA_01124at 1229.899 kb on - strand, within CCNA_01124at 1229.899 kb on - strand, within CCNA_01124at 1229.915 kb on + strand, within CCNA_01124at 1229.927 kb on - strand, within CCNA_01124at 1230.045 kb on - strand, within CCNA_01124at 1230.064 kb on + strand, within CCNA_01124at 1230.088 kb on + strand, within CCNA_01124at 1230.096 kb on - strand, within CCNA_01124at 1230.102 kb on + strand, within CCNA_01124at 1230.102 kb on + strand, within CCNA_01124at 1230.102 kb on + strand, within CCNA_01124at 1230.106 kb on - strand, within CCNA_01124at 1230.119 kb on + strand, within CCNA_01124at 1230.145 kb on - strand, within CCNA_01124at 1230.161 kb on - strand, within CCNA_01124at 1230.168 kb on + strand, within CCNA_01124at 1230.174 kb on + strand, within CCNA_01124at 1230.174 kb on + strand, within CCNA_01124at 1230.174 kb on + strand, within CCNA_01124at 1230.177 kb on - strand, within CCNA_01124at 1230.182 kb on - strand, within CCNA_01124at 1230.182 kb on - strand, within CCNA_01124at 1230.182 kb on - strand, within CCNA_01124at 1230.182 kb on - strand, within CCNA_01124at 1230.184 kb on + strand, within CCNA_01124at 1230.184 kb on - strand, within CCNA_01124at 1230.220 kb on + strand, within CCNA_01124at 1230.251 kb on - strand, within CCNA_01124at 1230.298 kb on - strandat 1230.298 kb on - strandat 1230.299 kb on - strandat 1230.316 kb on - strandat 1230.331 kb on - strandat 1230.375 kb on + strandat 1230.375 kb on + strandat 1230.375 kb on + strandat 1230.383 kb on - strandat 1230.447 kb on + strandat 1230.447 kb on + strandat 1230.447 kb on + strandat 1230.455 kb on - strandat 1230.455 kb on - strandat 1230.465 kb on - strandat 1230.488 kb on + strandat 1230.496 kb on - strandat 1230.524 kb on - strandat 1230.529 kb on - strandat 1230.564 kb on + strandat 1230.575 kb on + strandat 1230.575 kb on + strandat 1230.595 kb on + strandat 1230.596 kb on + strandat 1230.631 kb on + strandat 1230.680 kb on + strandat 1230.742 kb on - strandat 1230.821 kb on + strand, within CCNA_01125at 1230.830 kb on - strand, within CCNA_01125at 1230.846 kb on - strand, within CCNA_01125at 1230.886 kb on + strand, within CCNA_01125at 1230.926 kb on + strand, within CCNA_01125at 1231.000 kb on - strand, within CCNA_01125at 1231.032 kb on + strand, within CCNA_01125at 1231.035 kb on + strand, within CCNA_01125at 1231.045 kb on + strand, within CCNA_01125at 1231.057 kb on + strand, within CCNA_01125at 1231.057 kb on + strand, within CCNA_01125at 1231.060 kb on - strand, within CCNA_01125at 1231.075 kb on + strand, within CCNA_01125at 1231.133 kb on - strand, within CCNA_01125at 1231.182 kb on + strandat 1231.185 kb on - strandat 1231.185 kb on - strandat 1231.220 kb on - strandat 1231.220 kb on - strandat 1231.221 kb on + strandat 1231.226 kb on + strandat 1231.289 kb on + strandat 1231.559 kb on + strandat 1231.560 kb on + strandat 1231.570 kb on + strandat 1231.578 kb on - strandat 1231.580 kb on + strandat 1231.580 kb on + strandat 1231.588 kb on - strandat 1231.588 kb on - strandat 1231.588 kb on - strandat 1231.677 kb on + strandat 1231.684 kb on - strandat 1231.686 kb on + strandat 1231.713 kb on + strandat 1231.713 kb on + strandat 1231.806 kb on + strand, within CCNA_03890at 1231.819 kb on + strand, within CCNA_03890at 1231.821 kb on + strand, within CCNA_03890at 1231.829 kb on - strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.881 kb on + strand, within CCNA_03890at 1231.889 kb on - strand, within CCNA_03890at 1231.889 kb on - strandat 1231.897 kb on - strand, within CCNA_03890at 1231.899 kb on + strand, within CCNA_03890at 1231.899 kb on + strand, within CCNA_03890at 1231.907 kb on - strand, within CCNA_03890at 1231.910 kb on + strand, within CCNA_03890at 1231.933 kb on + strand, within CCNA_03890at 1231.947 kb on + strand, within CCNA_03890at 1231.954 kb on + strand, within CCNA_03890at 1231.991 kb on + strand, within CCNA_03890at 1232.043 kb on + strand, within CCNA_03890at 1232.043 kb on + strand, within CCNA_03890at 1232.059 kb on + strand, within CCNA_03890at 1232.066 kb on + strand, within CCNA_03890at 1232.076 kb on + strand, within CCNA_03890at 1232.078 kb on + strand, within CCNA_03890at 1232.079 kb on - strand, within CCNA_03890at 1232.083 kb on + strand, within CCNA_03890at 1232.084 kb on - strand, within CCNA_03890at 1232.084 kb on - strand, within CCNA_03890at 1232.098 kb on + strand, within CCNA_03890at 1232.100 kb on + strand, within CCNA_03890at 1232.119 kb on + strand, within CCNA_03890at 1232.124 kb on + strand, within CCNA_03890at 1232.209 kb on + strand, within CCNA_03890at 1232.214 kb on + strand, within CCNA_03890at 1232.218 kb on + strand, within CCNA_03890at 1232.220 kb on + strand, within CCNA_03890at 1232.227 kb on - strand, within CCNA_03890

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM
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1,229,758 + CCNA_01124 0.40 -1.0
1,229,766 - CCNA_01124 0.41 +0.1
1,229,766 - CCNA_01124 0.41 -0.8
1,229,773 - CCNA_01124 0.41 +1.1
1,229,775 + CCNA_01124 0.42 -1.2
1,229,816 - CCNA_01124 0.46 +0.5
1,229,817 - CCNA_01124 0.46 -1.1
1,229,864 + CCNA_01124 0.50 +0.2
1,229,872 - CCNA_01124 0.51 +0.4
1,229,872 - CCNA_01124 0.51 -0.6
1,229,872 - CCNA_01124 0.51 +0.4
1,229,891 + CCNA_01124 0.53 -1.5
1,229,899 - CCNA_01124 0.54 +0.1
1,229,899 - CCNA_01124 0.54 +0.2
1,229,899 - CCNA_01124 0.54 -0.6
1,229,915 + CCNA_01124 0.55 +0.6
1,229,927 - CCNA_01124 0.56 +0.0
1,230,045 - CCNA_01124 0.68 -0.7
1,230,064 + CCNA_01124 0.69 +0.1
1,230,088 + CCNA_01124 0.72 -0.4
1,230,096 - CCNA_01124 0.72 +0.2
1,230,102 + CCNA_01124 0.73 -0.7
1,230,102 + CCNA_01124 0.73 -0.6
1,230,102 + CCNA_01124 0.73 +1.3
1,230,106 - CCNA_01124 0.73 -0.7
1,230,119 + CCNA_01124 0.75 -1.1
1,230,145 - CCNA_01124 0.77 -1.1
1,230,161 - CCNA_01124 0.79 -1.3
1,230,168 + CCNA_01124 0.79 +0.1
1,230,174 + CCNA_01124 0.80 +0.0
1,230,174 + CCNA_01124 0.80 -0.3
1,230,174 + CCNA_01124 0.80 -0.3
1,230,177 - CCNA_01124 0.80 -0.4
1,230,182 - CCNA_01124 0.81 +0.7
1,230,182 - CCNA_01124 0.81 -1.2
1,230,182 - CCNA_01124 0.81 -1.0
1,230,182 - CCNA_01124 0.81 +0.1
1,230,184 + CCNA_01124 0.81 -1.5
1,230,184 - CCNA_01124 0.81 +2.4
1,230,220 + CCNA_01124 0.84 -1.4
1,230,251 - CCNA_01124 0.87 +1.0
1,230,298 - +2.2
1,230,298 - +0.0
1,230,299 - -1.4
1,230,316 - -2.1
1,230,331 - -1.4
1,230,375 + +2.4
1,230,375 + -2.2
1,230,375 + -0.2
1,230,383 - +0.1
1,230,447 + +0.4
1,230,447 + -0.2
1,230,447 + +0.1
1,230,455 - +0.2
1,230,455 - +0.4
1,230,465 - -0.2
1,230,488 + +2.0
1,230,496 - +0.1
1,230,524 - -0.4
1,230,529 - +0.4
1,230,564 + -1.9
1,230,575 + -0.9
1,230,575 + -1.8
1,230,595 + +0.9
1,230,596 + -1.1
1,230,631 + +0.6
1,230,680 + +1.2
1,230,742 - +0.1
1,230,821 + CCNA_01125 0.15 -0.8
1,230,830 - CCNA_01125 0.17 -0.2
1,230,846 - CCNA_01125 0.20 -0.4
1,230,886 + CCNA_01125 0.29 -0.9
1,230,926 + CCNA_01125 0.37 -1.6
1,231,000 - CCNA_01125 0.53 -1.8
1,231,032 + CCNA_01125 0.59 -1.5
1,231,035 + CCNA_01125 0.60 +0.2
1,231,045 + CCNA_01125 0.62 -0.5
1,231,057 + CCNA_01125 0.64 +1.2
1,231,057 + CCNA_01125 0.64 -0.2
1,231,060 - CCNA_01125 0.65 +0.1
1,231,075 + CCNA_01125 0.68 -1.4
1,231,133 - CCNA_01125 0.80 -0.9
1,231,182 + -1.2
1,231,185 - -0.7
1,231,185 - -0.1
1,231,220 - -0.3
1,231,220 - -1.0
1,231,221 + +1.1
1,231,226 + +0.4
1,231,289 + -0.4
1,231,559 + -0.6
1,231,560 + -1.0
1,231,570 + -0.6
1,231,578 - +0.7
1,231,580 + -0.2
1,231,580 + -1.7
1,231,588 - +0.6
1,231,588 - +2.7
1,231,588 - -0.1
1,231,677 + -1.1
1,231,684 - -0.6
1,231,686 + -1.6
1,231,713 + -1.1
1,231,713 + +0.3
1,231,806 + CCNA_03890 0.14 -1.8
1,231,819 + CCNA_03890 0.15 -0.1
1,231,821 + CCNA_03890 0.15 -0.6
1,231,829 - CCNA_03890 0.16 -2.1
1,231,881 + CCNA_03890 0.20 -1.0
1,231,881 + CCNA_03890 0.20 -0.4
1,231,881 + CCNA_03890 0.20 +0.2
1,231,881 + CCNA_03890 0.20 -0.5
1,231,881 + CCNA_03890 0.20 -0.1
1,231,881 + CCNA_03890 0.20 -1.5
1,231,881 + CCNA_03890 0.20 -2.2
1,231,881 + CCNA_03890 0.20 -0.5
1,231,881 + CCNA_03890 0.20 -0.3
1,231,881 + CCNA_03890 0.20 -1.2
1,231,889 - CCNA_03890 0.20 +1.0
1,231,889 - +3.0
1,231,897 - CCNA_03890 0.21 -0.7
1,231,899 + CCNA_03890 0.21 -1.5
1,231,899 + CCNA_03890 0.21 -1.2
1,231,907 - CCNA_03890 0.22 +0.9
1,231,910 + CCNA_03890 0.22 -0.8
1,231,933 + CCNA_03890 0.23 -1.0
1,231,947 + CCNA_03890 0.24 -0.6
1,231,954 + CCNA_03890 0.25 -0.4
1,231,991 + CCNA_03890 0.28 -0.5
1,232,043 + CCNA_03890 0.31 +0.1
1,232,043 + CCNA_03890 0.31 -1.0
1,232,059 + CCNA_03890 0.33 -1.3
1,232,066 + CCNA_03890 0.33 -0.7
1,232,076 + CCNA_03890 0.34 -0.6
1,232,078 + CCNA_03890 0.34 +0.9
1,232,079 - CCNA_03890 0.34 -1.1
1,232,083 + CCNA_03890 0.34 -0.6
1,232,084 - CCNA_03890 0.34 +0.0
1,232,084 - CCNA_03890 0.34 +2.0
1,232,098 + CCNA_03890 0.35 +1.0
1,232,100 + CCNA_03890 0.36 -0.7
1,232,119 + CCNA_03890 0.37 +0.1
1,232,124 + CCNA_03890 0.37 +0.9
1,232,209 + CCNA_03890 0.43 +0.0
1,232,214 + CCNA_03890 0.44 +0.0
1,232,218 + CCNA_03890 0.44 -0.8
1,232,220 + CCNA_03890 0.44 -0.4
1,232,227 - CCNA_03890 0.45 +1.2

Or see this region's nucleotide sequence