Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00936

Experiment: PYE with Nickel (II) chloride 0.3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nickel (II) chloride 0.3 mM
1,010,881	+		CCNA_00935	0.19	+0.2
1,010,918	-		CCNA_00935	0.23	-0.5
1,010,918	-		CCNA_00935	0.23	+0.3
1,010,933	-		CCNA_00935	0.24	-0.4
1,010,938	-		CCNA_00935	0.25	-0.0
1,010,968	+		CCNA_00935	0.28	-0.0
1,010,985	+		CCNA_00935	0.30	+2.6
1,010,985	+		CCNA_00935	0.30	-0.5
1,010,993	-		CCNA_00935	0.30	-0.3
1,010,993	-		CCNA_00935	0.30	+1.2
1,010,993	-		CCNA_00935	0.30	-0.7
1,010,993	-		CCNA_00935	0.30	+0.2
1,010,995	+		CCNA_00935	0.31	-1.4
1,011,091	-		CCNA_00935	0.40	+0.4
1,011,112	-		CCNA_00935	0.42	-1.2
1,011,164	+		CCNA_00935	0.48	+0.4
1,011,172	-		CCNA_00935	0.49	-0.9
1,011,179	-		CCNA_00935	0.49	-0.2
1,011,181	-		CCNA_00935	0.49	+1.4
1,011,194	-		CCNA_00935	0.51	-1.2
1,011,207	+		CCNA_00935	0.52	-1.2
1,011,207	+		CCNA_00935	0.52	+1.0
1,011,239	+		CCNA_00935	0.55	+0.6
1,011,247	-		CCNA_00935	0.56	-1.7
1,011,247	-		CCNA_00935	0.56	+0.6
1,011,264	-		CCNA_00935	0.58	-0.4
1,011,286	-		CCNA_00935	0.60	-0.3
1,011,293	-		CCNA_00935	0.61	-0.5
1,011,314	-		CCNA_00935	0.63	-0.2
1,011,314	-		CCNA_00935	0.63	-1.2
1,011,324	+		CCNA_00935	0.64	+2.0
1,011,324	+		CCNA_00935	0.64	-0.5
1,011,327	-		CCNA_00935	0.64	+0.7
1,011,343	+		CCNA_00935	0.66	+0.9
1,011,344	+		CCNA_00935	0.66	-0.0
1,011,351	-		CCNA_00935	0.67	-0.3
1,011,352	-		CCNA_00935	0.67	-0.9
1,011,352	-		CCNA_00935	0.67	+3.0
1,011,352	-		CCNA_00935	0.67	-0.2
1,011,352	-		CCNA_00935	0.67	-1.2
1,011,352	-		CCNA_00935	0.67	+1.0
1,011,352	-		CCNA_00935	0.67	-0.7
1,011,359	+		CCNA_00935	0.67	+0.7
1,011,374	-		CCNA_00935	0.69	-2.0
1,011,424	-		CCNA_00935	0.74	-0.4
1,011,462	+		CCNA_00935	0.78	-0.9
1,011,470	-		CCNA_00935	0.79	-0.9
1,011,470	-		CCNA_00935	0.79	+1.5
1,011,487	+		CCNA_00935	0.80	+0.4
1,011,487	+		CCNA_00935	0.80	+1.1
1,011,489	-		CCNA_00935	0.81	-0.3
1,011,495	-		CCNA_00935	0.81	-0.6
1,011,547	+		CCNA_00935	0.87	+0.5
1,011,553	+		CCNA_00935	0.87	+0.2
1,011,553	+		CCNA_00935	0.87	-2.7
1,011,662	-				+1.2
1,011,662	-				-0.6
1,011,669	-				-0.4
1,011,693	-				-0.9
1,011,697	-				+1.2
1,011,699	+				+0.0
1,011,726	-				+0.2
1,011,741	+				-0.2
1,011,794	-				+2.8
1,011,841	+				+0.2
1,011,853	-				-0.8
1,011,853	-				+0.2
1,011,894	+		CCNA_00936	0.10	-0.9
1,011,894	+		CCNA_00936	0.10	-0.9
1,011,900	+		CCNA_00936	0.11	+0.0
1,011,902	-		CCNA_00936	0.11	-0.9
1,011,902	-		CCNA_00936	0.11	-0.1
1,011,913	-		CCNA_00936	0.12	-1.5
1,012,021	-		CCNA_00936	0.25	-0.3
1,012,028	+		CCNA_00936	0.26	-1.2
1,012,070	-		CCNA_00936	0.31	+1.2
1,012,076	+		CCNA_00936	0.32	+0.6
1,012,148	+		CCNA_00936	0.40	+0.1
1,012,163	+		CCNA_00936	0.42	-0.1
1,012,201	+		CCNA_00936	0.47	+0.3
1,012,209	-		CCNA_00936	0.47	+0.2
1,012,213	+		CCNA_00936	0.48	+0.4
1,012,220	-		CCNA_00936	0.49	+0.1
1,012,251	+		CCNA_00936	0.53	-0.6
1,012,301	-		CCNA_00936	0.58	-1.0
1,012,317	+		CCNA_00936	0.60	-0.9
1,012,335	+		CCNA_00936	0.62	+3.0
1,012,360	+		CCNA_00936	0.65	-1.3
1,012,404	+		CCNA_00936	0.71	-1.5
1,012,524	+		CCNA_00936	0.85	+0.6
1,012,524	+		CCNA_00936	0.85	-1.7
1,012,529	+		CCNA_00936	0.86	-1.4
1,012,532	-		CCNA_00936	0.86	-0.2
1,012,541	+		CCNA_00936	0.87	+0.1
1,012,549	-		CCNA_00936	0.88	-2.4
1,012,587	-				-0.3
1,012,587	-				-0.5
1,012,599	-				-0.4
1,012,607	+				+0.4
1,012,615	-				-0.7
1,012,617	+				-0.6
1,012,635	-				-0.3
1,012,636	+				-0.7
1,012,636	+				+0.5
1,012,657	+				+1.3
1,012,666	+				-0.2
1,012,667	+				+1.3
1,012,674	-				-2.2
1,012,676	+				-1.0
1,012,689	-		CCNA_00937	0.13	-1.8
1,012,717	-		CCNA_00937	0.23	-0.2
1,012,727	-		CCNA_00937	0.27	-0.3
1,012,727	-		CCNA_00937	0.27	-1.9
1,012,792	+		CCNA_00937	0.51	-0.5
1,012,802	+		CCNA_00937	0.54	+1.0
1,012,841	-		CCNA_00937	0.69	-1.2
1,012,856	+		CCNA_00937	0.74	-0.4
1,012,859	-		CCNA_00937	0.76	+0.6
1,012,884	+		CCNA_00937	0.85	-0.9
1,012,884	+		CCNA_00937	0.85	-0.6
1,012,894	+		CCNA_00937	0.89	-1.0
1,012,894	+		CCNA_00937	0.89	+0.6
1,012,902	-				+0.9
1,012,902	-				-0.9
1,012,902	-				+1.0
1,012,902	-				-1.5
1,012,944	-				-0.3
1,012,944	-				+0.6
1,012,946	+				-0.1
1,012,976	-				-0.3
1,013,040	+				-1.1
1,013,082	-				-1.3
1,013,083	-				-0.4
1,013,092	-				+0.1
1,013,092	-				-2.7
1,013,092	-				-0.9
1,013,116	-				-0.1
1,013,174	+				-0.5
1,013,174	+				+1.2
1,013,177	-				+0.7
1,013,182	-				-0.7
1,013,182	-				-1.5
1,013,257	-		CCNA_00938	0.14	+0.0
1,013,262	+		CCNA_00938	0.15	-0.2
1,013,289	-		CCNA_00938	0.17	+0.0
1,013,289	-		CCNA_00938	0.17	-1.1
1,013,319	-		CCNA_00938	0.20	-0.8
1,013,329	-		CCNA_00938	0.20	-0.0
1,013,347	+		CCNA_00938	0.22	-1.0
1,013,347	+		CCNA_00938	0.22	-0.1
1,013,357	+		CCNA_00938	0.23	-0.9
1,013,365	-		CCNA_00938	0.23	-0.2
1,013,377	-		CCNA_00938	0.24	+0.0
1,013,396	+		CCNA_00938	0.26	-1.4
1,013,396	+		CCNA_00938	0.26	+1.0
1,013,396	+		CCNA_00938	0.26	-0.4
1,013,406	+		CCNA_00938	0.27	-0.2
1,013,414	-		CCNA_00938	0.28	-0.5
1,013,420	-		CCNA_00938	0.28	+0.2
1,013,420	-		CCNA_00938	0.28	-0.6
1,013,442	-		CCNA_00938	0.30	-0.1
1,013,449	-		CCNA_00938	0.31	+0.2
1,013,469	-		CCNA_00938	0.32	-0.3
1,013,488	+		CCNA_00938	0.34	-0.9
1,013,489	+		CCNA_00938	0.34	-0.5
1,013,494	+		CCNA_00938	0.34	-1.7
1,013,497	-		CCNA_00938	0.35	-0.1
1,013,497	-		CCNA_00938	0.35	+0.8
1,013,557	+		CCNA_00938	0.40	-0.8
1,013,565	-		CCNA_00938	0.40	-0.8
1,013,565	-		CCNA_00938	0.40	-1.5
1,013,565	-		CCNA_00938	0.40	-0.6
1,013,565	-		CCNA_00938	0.40	-0.2
1,013,581	+		CCNA_00938	0.42	-1.7
1,013,584	-		CCNA_00938	0.42	-1.1
1,013,600	-		CCNA_00938	0.43	-1.1
1,013,605	-		CCNA_00938	0.44	-0.6
1,013,618	+		CCNA_00938	0.45	-1.2