Experiment: PYE with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00903 and CCNA_00904 overlap by 4 nucleotides CCNA_00904 and CCNA_00905 are separated by 28 nucleotides CCNA_00905 and CCNA_00906 are separated by 69 nucleotides
CCNA_00903: CCNA_00903 - inositol transport ATP-binding protein IatA, at 982,938 to 984,485
_00903
CCNA_00904: CCNA_00904 - inositol ABC transport system, permease protein IatP, at 984,482 to 985,480
_00904
CCNA_00905: CCNA_00905 - exonuclease-endonuclease-phosphatase (EEP1) protein, at 985,509 to 986,396
_00905
CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380
_00906
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 983.516 kb on + strand, within CCNA_00903 at 983.523 kb on + strand, within CCNA_00903 at 983.524 kb on - strand, within CCNA_00903 at 983.524 kb on - strand, within CCNA_00903 at 983.557 kb on - strand, within CCNA_00903 at 983.579 kb on - strand, within CCNA_00903 at 983.672 kb on + strand, within CCNA_00903 at 983.815 kb on - strand, within CCNA_00903 at 983.830 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.835 kb on + strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.843 kb on - strand, within CCNA_00903 at 983.882 kb on + strand, within CCNA_00903 at 983.926 kb on + strand, within CCNA_00903 at 983.934 kb on - strand, within CCNA_00903 at 983.941 kb on + strand, within CCNA_00903 at 983.941 kb on + strand, within CCNA_00903 at 983.944 kb on - strand, within CCNA_00903 at 983.953 kb on + strand, within CCNA_00903 at 983.970 kb on + strand, within CCNA_00903 at 983.975 kb on + strand, within CCNA_00903 at 983.983 kb on - strand, within CCNA_00903 at 984.007 kb on + strand, within CCNA_00903 at 984.014 kb on - strand, within CCNA_00903 at 984.015 kb on - strand, within CCNA_00903 at 984.016 kb on + strand, within CCNA_00903 at 984.044 kb on + strand, within CCNA_00903 at 984.048 kb on - strand, within CCNA_00903 at 984.080 kb on + strand, within CCNA_00903 at 984.080 kb on + strand, within CCNA_00903 at 984.146 kb on + strand, within CCNA_00903 at 984.154 kb on - strand, within CCNA_00903 at 984.203 kb on + strand, within CCNA_00903 at 984.232 kb on + strand, within CCNA_00903 at 984.329 kb on + strand, within CCNA_00903 at 984.401 kb on - strand at 984.414 kb on + strand at 984.430 kb on - strand at 984.432 kb on - strand at 984.439 kb on + strand at 984.447 kb on - strand at 984.523 kb on + strand at 984.544 kb on - strand at 984.544 kb on - strand at 984.574 kb on - strand at 984.595 kb on + strand, within CCNA_00904 at 984.628 kb on + strand, within CCNA_00904 at 984.635 kb on + strand, within CCNA_00904 at 984.643 kb on - strand, within CCNA_00904 at 984.682 kb on + strand, within CCNA_00904 at 984.683 kb on + strand, within CCNA_00904 at 984.683 kb on + strand, within CCNA_00904 at 984.706 kb on - strand, within CCNA_00904 at 984.706 kb on - strand, within CCNA_00904 at 984.734 kb on + strand, within CCNA_00904 at 984.761 kb on + strand, within CCNA_00904 at 984.769 kb on - strand, within CCNA_00904 at 984.769 kb on - strand, within CCNA_00904 at 984.798 kb on + strand, within CCNA_00904 at 984.813 kb on - strand, within CCNA_00904 at 984.827 kb on + strand, within CCNA_00904 at 984.827 kb on + strand, within CCNA_00904 at 984.832 kb on + strand, within CCNA_00904 at 984.835 kb on - strand, within CCNA_00904 at 984.841 kb on + strand, within CCNA_00904 at 984.841 kb on + strand, within CCNA_00904 at 984.842 kb on + strand, within CCNA_00904 at 984.854 kb on + strand, within CCNA_00904 at 984.854 kb on + strand, within CCNA_00904 at 984.859 kb on + strand, within CCNA_00904 at 984.859 kb on + strand, within CCNA_00904 at 984.859 kb on + strand, within CCNA_00904 at 984.862 kb on - strand, within CCNA_00904 at 984.862 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.874 kb on - strand, within CCNA_00904 at 984.897 kb on + strand, within CCNA_00904 at 984.938 kb on - strand, within CCNA_00904 at 984.990 kb on + strand, within CCNA_00904 at 984.990 kb on + strand, within CCNA_00904 at 985.030 kb on + strand, within CCNA_00904 at 985.035 kb on + strand, within CCNA_00904 at 985.072 kb on + strand, within CCNA_00904 at 985.080 kb on - strand, within CCNA_00904 at 985.082 kb on + strand at 985.096 kb on + strand, within CCNA_00904 at 985.096 kb on + strand, within CCNA_00904 at 985.104 kb on - strand, within CCNA_00904 at 985.104 kb on - strand, within CCNA_00904 at 985.117 kb on + strand, within CCNA_00904 at 985.264 kb on + strand, within CCNA_00904 at 985.271 kb on + strand, within CCNA_00904 at 985.278 kb on + strand, within CCNA_00904 at 985.296 kb on + strand, within CCNA_00904 at 985.309 kb on - strand, within CCNA_00904 at 985.323 kb on - strand, within CCNA_00904 at 985.345 kb on - strand, within CCNA_00904 at 985.366 kb on + strand, within CCNA_00904 at 985.385 kb on - strand at 985.421 kb on + strand at 985.426 kb on + strand at 985.429 kb on - strand at 985.447 kb on - strand at 985.463 kb on - strand at 985.467 kb on + strand at 985.475 kb on + strand at 985.475 kb on + strand at 985.483 kb on - strand at 985.485 kb on + strand at 985.492 kb on + strand at 985.497 kb on + strand at 985.500 kb on - strand at 985.505 kb on - strand at 985.505 kb on - strand at 985.505 kb on - strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.514 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.519 kb on + strand at 985.521 kb on - strand at 985.567 kb on - strand at 985.567 kb on - strand at 985.570 kb on - strand at 985.607 kb on + strand, within CCNA_00905 at 985.607 kb on + strand, within CCNA_00905 at 985.673 kb on + strand, within CCNA_00905 at 985.678 kb on + strand, within CCNA_00905 at 985.678 kb on + strand, within CCNA_00905 at 985.696 kb on - strand, within CCNA_00905 at 985.798 kb on + strand, within CCNA_00905 at 985.798 kb on + strand, within CCNA_00905 at 985.806 kb on - strand, within CCNA_00905 at 985.849 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.873 kb on + strand, within CCNA_00905 at 985.873 kb on + strand, within CCNA_00905 at 985.896 kb on + strand, within CCNA_00905 at 985.896 kb on + strand, within CCNA_00905 at 985.904 kb on - strand, within CCNA_00905 at 985.944 kb on + strand, within CCNA_00905 at 985.956 kb on - strand, within CCNA_00905 at 985.966 kb on + strand, within CCNA_00905 at 985.966 kb on + strand, within CCNA_00905 at 985.971 kb on + strand, within CCNA_00905 at 986.012 kb on + strand, within CCNA_00905 at 986.029 kb on + strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.044 kb on + strand, within CCNA_00905 at 986.052 kb on - strand, within CCNA_00905 at 986.109 kb on + strand, within CCNA_00905 at 986.109 kb on + strand, within CCNA_00905 at 986.113 kb on + strand, within CCNA_00905 at 986.128 kb on - strand, within CCNA_00905 at 986.138 kb on + strand, within CCNA_00905 at 986.166 kb on + strand, within CCNA_00905 at 986.177 kb on + strand, within CCNA_00905 at 986.229 kb on - strand, within CCNA_00905 at 986.309 kb on - strand at 986.338 kb on + strand at 986.338 kb on + strand at 986.372 kb on + strand at 986.380 kb on - strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.399 kb on - strand at 986.399 kb on - strand at 986.399 kb on - strand at 986.427 kb on + strand at 986.427 kb on - strand at 986.434 kb on - strand at 986.448 kb on - strand at 986.463 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM remove 983,516 + CCNA_00903 0.37 -0.1 983,523 + CCNA_00903 0.38 +1.8 983,524 - CCNA_00903 0.38 +0.3 983,524 - CCNA_00903 0.38 -0.8 983,557 - CCNA_00903 0.40 +0.7 983,579 - CCNA_00903 0.41 -1.1 983,672 + CCNA_00903 0.47 +0.2 983,815 - CCNA_00903 0.57 -0.8 983,830 + CCNA_00903 0.58 -0.4 983,835 + CCNA_00903 0.58 +0.6 983,835 + CCNA_00903 0.58 +0.8 983,835 + CCNA_00903 0.58 -0.5 983,835 + CCNA_00903 0.58 +0.8 983,843 - CCNA_00903 0.58 -0.5 983,843 - CCNA_00903 0.58 -0.5 983,843 - CCNA_00903 0.58 +1.3 983,843 - CCNA_00903 0.58 -0.3 983,843 - CCNA_00903 0.58 +0.5 983,843 - CCNA_00903 0.58 -0.9 983,843 - CCNA_00903 0.58 +0.3 983,882 + CCNA_00903 0.61 -1.2 983,926 + CCNA_00903 0.64 +2.1 983,934 - CCNA_00903 0.64 -0.1 983,941 + CCNA_00903 0.65 -1.0 983,941 + CCNA_00903 0.65 +1.6 983,944 - CCNA_00903 0.65 +1.0 983,953 + CCNA_00903 0.66 +0.3 983,970 + CCNA_00903 0.67 +0.6 983,975 + CCNA_00903 0.67 +0.2 983,983 - CCNA_00903 0.68 +1.3 984,007 + CCNA_00903 0.69 +0.5 984,014 - CCNA_00903 0.70 +0.3 984,015 - CCNA_00903 0.70 +0.3 984,016 + CCNA_00903 0.70 +0.7 984,044 + CCNA_00903 0.71 +1.1 984,048 - CCNA_00903 0.72 +0.6 984,080 + CCNA_00903 0.74 -0.6 984,080 + CCNA_00903 0.74 +0.9 984,146 + CCNA_00903 0.78 -1.0 984,154 - CCNA_00903 0.79 +0.4 984,203 + CCNA_00903 0.82 +0.3 984,232 + CCNA_00903 0.84 -2.0 984,329 + CCNA_00903 0.90 -0.8 984,401 - +0.9 984,414 + -0.3 984,430 - +1.1 984,432 - -0.0 984,439 + +0.4 984,447 - +1.8 984,523 + +1.3 984,544 - +1.8 984,544 - -1.1 984,574 - -0.1 984,595 + CCNA_00904 0.11 -1.2 984,628 + CCNA_00904 0.15 -0.2 984,635 + CCNA_00904 0.15 -1.0 984,643 - CCNA_00904 0.16 -1.3 984,682 + CCNA_00904 0.20 -0.3 984,683 + CCNA_00904 0.20 +0.2 984,683 + CCNA_00904 0.20 -1.2 984,706 - CCNA_00904 0.22 -0.8 984,706 - CCNA_00904 0.22 -1.9 984,734 + CCNA_00904 0.25 -0.2 984,761 + CCNA_00904 0.28 -0.9 984,769 - CCNA_00904 0.29 +0.9 984,769 - CCNA_00904 0.29 -0.5 984,798 + CCNA_00904 0.32 -2.8 984,813 - CCNA_00904 0.33 -0.6 984,827 + CCNA_00904 0.35 -1.1 984,827 + CCNA_00904 0.35 -0.3 984,832 + CCNA_00904 0.35 -1.0 984,835 - CCNA_00904 0.35 +2.1 984,841 + CCNA_00904 0.36 -0.1 984,841 + CCNA_00904 0.36 -0.1 984,842 + CCNA_00904 0.36 +1.5 984,854 + CCNA_00904 0.37 -0.4 984,854 + CCNA_00904 0.37 +1.6 984,859 + CCNA_00904 0.38 -1.1 984,859 + CCNA_00904 0.38 -1.1 984,859 + CCNA_00904 0.38 -0.1 984,862 - CCNA_00904 0.38 -0.8 984,862 - CCNA_00904 0.38 -0.1 984,867 - CCNA_00904 0.39 +1.8 984,867 - CCNA_00904 0.39 +0.9 984,867 - CCNA_00904 0.39 -1.8 984,867 - CCNA_00904 0.39 +0.2 984,867 - CCNA_00904 0.39 -0.2 984,867 - CCNA_00904 0.39 -0.3 984,874 - CCNA_00904 0.39 -0.6 984,897 + CCNA_00904 0.42 -0.9 984,938 - CCNA_00904 0.46 +0.4 984,990 + CCNA_00904 0.51 -0.5 984,990 + CCNA_00904 0.51 -0.9 985,030 + CCNA_00904 0.55 -0.7 985,035 + CCNA_00904 0.55 -0.9 985,072 + CCNA_00904 0.59 -0.9 985,080 - CCNA_00904 0.60 +1.3 985,082 + +1.5 985,096 + CCNA_00904 0.61 +3.1 985,096 + CCNA_00904 0.61 -0.4 985,104 - CCNA_00904 0.62 -0.7 985,104 - CCNA_00904 0.62 -0.7 985,117 + CCNA_00904 0.64 -1.6 985,264 + CCNA_00904 0.78 -2.7 985,271 + CCNA_00904 0.79 +0.3 985,278 + CCNA_00904 0.80 +0.4 985,296 + CCNA_00904 0.81 +0.0 985,309 - CCNA_00904 0.83 -0.4 985,323 - CCNA_00904 0.84 +0.9 985,345 - CCNA_00904 0.86 +0.9 985,366 + CCNA_00904 0.88 -0.6 985,385 - -0.5 985,421 + +2.1 985,426 + +0.6 985,429 - -0.0 985,447 - +0.9 985,463 - -0.2 985,467 + -1.0 985,475 + -0.6 985,475 + +0.2 985,483 - -0.3 985,485 + -0.2 985,492 + -0.2 985,497 + +0.6 985,500 - +0.8 985,505 - -1.1 985,505 - +2.5 985,505 - +0.1 985,507 + -1.2 985,507 + -1.0 985,507 + +1.8 985,507 + -2.1 985,507 + -1.8 985,507 + -1.0 985,507 + -1.5 985,507 + -1.4 985,507 + -1.4 985,507 + -0.8 985,507 + +0.5 985,507 + +0.4 985,507 + -1.2 985,507 + +1.3 985,507 + -0.6 985,507 + -0.8 985,507 + +0.0 985,507 + +0.3 985,507 + -0.8 985,514 - -0.8 985,515 - -1.5 985,515 - +0.6 985,515 - +0.8 985,515 - -0.9 985,515 - -0.0 985,515 - -1.2 985,515 - +0.1 985,515 - +1.0 985,515 - -1.3 985,515 - -0.7 985,515 - -0.4 985,515 - -0.6 985,519 + -0.1 985,521 - -0.4 985,567 - -2.6 985,567 - +0.6 985,570 - -1.3 985,607 + CCNA_00905 0.11 +0.1 985,607 + CCNA_00905 0.11 -0.2 985,673 + CCNA_00905 0.18 -1.1 985,678 + CCNA_00905 0.19 +0.2 985,678 + CCNA_00905 0.19 -0.5 985,696 - CCNA_00905 0.21 -0.9 985,798 + CCNA_00905 0.33 +1.5 985,798 + CCNA_00905 0.33 -1.0 985,806 - CCNA_00905 0.33 -0.9 985,849 + CCNA_00905 0.38 +0.1 985,854 + CCNA_00905 0.39 +0.5 985,854 + CCNA_00905 0.39 -0.1 985,854 + CCNA_00905 0.39 +0.5 985,862 - CCNA_00905 0.40 +0.6 985,862 - CCNA_00905 0.40 -0.9 985,862 - CCNA_00905 0.40 -1.6 985,862 - CCNA_00905 0.40 -0.2 985,873 + CCNA_00905 0.41 -0.2 985,873 + CCNA_00905 0.41 +2.1 985,896 + CCNA_00905 0.44 -1.0 985,896 + CCNA_00905 0.44 -1.5 985,904 - CCNA_00905 0.44 -0.7 985,944 + CCNA_00905 0.49 -1.3 985,956 - CCNA_00905 0.50 -0.1 985,966 + CCNA_00905 0.51 -0.6 985,966 + CCNA_00905 0.51 +0.1 985,971 + CCNA_00905 0.52 -0.1 986,012 + CCNA_00905 0.57 -1.8 986,029 + CCNA_00905 0.59 +0.1 986,037 - CCNA_00905 0.59 +2.1 986,037 - CCNA_00905 0.59 +1.1 986,037 - CCNA_00905 0.59 +0.1 986,044 + CCNA_00905 0.60 -0.3 986,052 - CCNA_00905 0.61 +0.4 986,109 + CCNA_00905 0.68 -2.1 986,109 + CCNA_00905 0.68 +0.8 986,113 + CCNA_00905 0.68 +0.3 986,128 - CCNA_00905 0.70 -0.4 986,138 + CCNA_00905 0.71 -0.3 986,166 + CCNA_00905 0.74 +0.9 986,177 + CCNA_00905 0.75 +0.6 986,229 - CCNA_00905 0.81 -0.3 986,309 - -0.2 986,338 + -0.3 986,338 + -0.6 986,372 + +0.2 986,380 - -0.4 986,391 + +0.9 986,391 + +1.1 986,391 + +1.1 986,391 + +0.2 986,399 - -2.9 986,399 - +0.4 986,399 - +0.9 986,427 + -2.1 986,427 - -0.3 986,434 - -1.5 986,448 - +0.1 986,463 + +0.3
Or see this region's nucleotide sequence