Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00901

Experiment: PYE with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00900 and CCNA_00901 are separated by 269 nucleotidesCCNA_00901 and CCNA_00902 are separated by 328 nucleotides CCNA_00900: CCNA_00900 - CHASE4-family GGDEF/EAL protein, at 978,293 to 980,500 _00900 CCNA_00901: CCNA_00901 - alpha/beta hydrolase family protein, at 980,770 to 981,606 _00901 CCNA_00902: CCNA_00902 - inositol ABC transporter, periplasmic inositol-binding protein IbpA, at 981,935 to 982,915 _00902 Position (kb) 980 981 982Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 979.782 kb on - strand, within CCNA_00900at 979.798 kb on + strand, within CCNA_00900at 979.825 kb on - strand, within CCNA_00900at 979.825 kb on - strand, within CCNA_00900at 979.832 kb on + strand, within CCNA_00900at 979.878 kb on + strand, within CCNA_00900at 979.895 kb on + strand, within CCNA_00900at 979.902 kb on + strand, within CCNA_00900at 979.903 kb on - strand, within CCNA_00900at 979.922 kb on - strand, within CCNA_00900at 979.973 kb on + strand, within CCNA_00900at 979.974 kb on + strand, within CCNA_00900at 979.981 kb on - strand, within CCNA_00900at 979.981 kb on - strand, within CCNA_00900at 979.993 kb on + strand, within CCNA_00900at 980.000 kb on + strand, within CCNA_00900at 980.048 kb on - strand, within CCNA_00900at 980.154 kb on + strandat 980.192 kb on + strand, within CCNA_00900at 980.192 kb on + strand, within CCNA_00900at 980.192 kb on + strand, within CCNA_00900at 980.236 kb on + strand, within CCNA_00900at 980.236 kb on + strand, within CCNA_00900at 980.244 kb on - strand, within CCNA_00900at 980.278 kb on + strand, within CCNA_00900at 980.282 kb on - strandat 980.282 kb on - strandat 980.284 kb on + strandat 980.324 kb on + strandat 980.332 kb on - strandat 980.338 kb on + strandat 980.361 kb on + strandat 980.402 kb on - strandat 980.405 kb on + strandat 980.494 kb on + strandat 980.502 kb on - strandat 980.502 kb on - strandat 980.538 kb on + strandat 980.546 kb on - strandat 980.577 kb on - strandat 980.590 kb on + strandat 980.608 kb on + strandat 980.632 kb on - strandat 980.820 kb on - strandat 980.822 kb on + strandat 980.822 kb on + strandat 980.822 kb on + strandat 980.822 kb on + strandat 980.847 kb on - strandat 980.869 kb on + strand, within CCNA_00901at 980.874 kb on + strand, within CCNA_00901at 980.883 kb on - strand, within CCNA_00901at 980.925 kb on + strand, within CCNA_00901at 980.971 kb on + strand, within CCNA_00901at 980.971 kb on + strand, within CCNA_00901at 980.971 kb on + strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 981.018 kb on + strand, within CCNA_00901at 981.024 kb on + strand, within CCNA_00901at 981.048 kb on + strand, within CCNA_00901at 981.056 kb on - strand, within CCNA_00901at 981.093 kb on - strand, within CCNA_00901at 981.102 kb on + strand, within CCNA_00901at 981.118 kb on + strand, within CCNA_00901at 981.128 kb on + strand, within CCNA_00901at 981.128 kb on + strand, within CCNA_00901at 981.128 kb on + strand, within CCNA_00901at 981.136 kb on - strand, within CCNA_00901at 981.136 kb on - strand, within CCNA_00901at 981.154 kb on + strand, within CCNA_00901at 981.155 kb on + strand, within CCNA_00901at 981.163 kb on - strand, within CCNA_00901at 981.200 kb on - strand, within CCNA_00901at 981.200 kb on - strand, within CCNA_00901at 981.223 kb on - strand, within CCNA_00901at 981.223 kb on - strand, within CCNA_00901at 981.223 kb on - strand, within CCNA_00901at 981.228 kb on - strand, within CCNA_00901at 981.317 kb on + strand, within CCNA_00901at 981.325 kb on - strand, within CCNA_00901at 981.325 kb on - strand, within CCNA_00901at 981.382 kb on - strand, within CCNA_00901at 981.386 kb on + strand, within CCNA_00901at 981.386 kb on + strand, within CCNA_00901at 981.401 kb on + strand, within CCNA_00901at 981.401 kb on + strand, within CCNA_00901at 981.401 kb on + strand, within CCNA_00901at 981.404 kb on - strand, within CCNA_00901at 981.406 kb on + strand, within CCNA_00901at 981.407 kb on - strand, within CCNA_00901at 981.409 kb on - strand, within CCNA_00901at 981.457 kb on - strand, within CCNA_00901at 981.488 kb on - strand, within CCNA_00901at 981.495 kb on + strand, within CCNA_00901at 981.532 kb on + strandat 981.540 kb on - strandat 981.540 kb on - strandat 981.563 kb on - strandat 981.593 kb on - strandat 981.613 kb on + strandat 981.642 kb on - strandat 981.642 kb on - strandat 981.642 kb on - strandat 981.642 kb on - strandat 981.655 kb on - strandat 981.665 kb on - strandat 981.701 kb on + strandat 981.730 kb on + strandat 981.742 kb on + strandat 981.742 kb on + strandat 981.742 kb on + strandat 981.747 kb on + strandat 981.747 kb on + strandat 981.750 kb on - strandat 981.750 kb on - strandat 981.755 kb on - strandat 981.770 kb on + strandat 981.778 kb on + strandat 981.879 kb on + strandat 981.906 kb on - strandat 981.932 kb on + strandat 981.933 kb on - strandat 981.940 kb on - strandat 981.969 kb on - strandat 981.970 kb on + strandat 981.997 kb on - strandat 982.012 kb on - strandat 982.034 kb on - strand, within CCNA_00902at 982.045 kb on + strand, within CCNA_00902at 982.052 kb on + strand, within CCNA_00902at 982.074 kb on + strand, within CCNA_00902at 982.076 kb on + strand, within CCNA_00902at 982.122 kb on - strand, within CCNA_00902at 982.137 kb on - strand, within CCNA_00902at 982.155 kb on - strand, within CCNA_00902at 982.157 kb on + strand, within CCNA_00902at 982.162 kb on + strand, within CCNA_00902at 982.170 kb on + strand, within CCNA_00902at 982.190 kb on - strand, within CCNA_00902at 982.200 kb on + strand, within CCNA_00902at 982.200 kb on + strand, within CCNA_00902at 982.205 kb on + strand, within CCNA_00902at 982.205 kb on + strand, within CCNA_00902at 982.205 kb on + strand, within CCNA_00902at 982.213 kb on + strand, within CCNA_00902at 982.213 kb on + strand, within CCNA_00902at 982.213 kb on - strand, within CCNA_00902at 982.221 kb on - strand, within CCNA_00902at 982.250 kb on + strand, within CCNA_00902at 982.273 kb on - strand, within CCNA_00902at 982.292 kb on + strand, within CCNA_00902at 982.383 kb on - strand, within CCNA_00902at 982.394 kb on + strand, within CCNA_00902at 982.422 kb on + strandat 982.449 kb on + strand, within CCNA_00902at 982.449 kb on + strand, within CCNA_00902at 982.468 kb on + strand, within CCNA_00902at 982.468 kb on + strand, within CCNA_00902at 982.476 kb on - strand, within CCNA_00902at 982.476 kb on - strand, within CCNA_00902at 982.486 kb on - strand, within CCNA_00902at 982.540 kb on + strand, within CCNA_00902at 982.548 kb on - strand, within CCNA_00902at 982.548 kb on - strand, within CCNA_00902at 982.556 kb on + strand, within CCNA_00902at 982.585 kb on - strand, within CCNA_00902

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM
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979,782 - CCNA_00900 0.67 +0.3
979,798 + CCNA_00900 0.68 +2.1
979,825 - CCNA_00900 0.69 -0.3
979,825 - CCNA_00900 0.69 -1.7
979,832 + CCNA_00900 0.70 +1.7
979,878 + CCNA_00900 0.72 +1.5
979,895 + CCNA_00900 0.73 +1.0
979,902 + CCNA_00900 0.73 +0.8
979,903 - CCNA_00900 0.73 +1.9
979,922 - CCNA_00900 0.74 -0.9
979,973 + CCNA_00900 0.76 -0.1
979,974 + CCNA_00900 0.76 -0.7
979,981 - CCNA_00900 0.76 +0.3
979,981 - CCNA_00900 0.76 -1.6
979,993 + CCNA_00900 0.77 +0.7
980,000 + CCNA_00900 0.77 +2.3
980,048 - CCNA_00900 0.79 +1.9
980,154 + +4.1
980,192 + CCNA_00900 0.86 +0.5
980,192 + CCNA_00900 0.86 -0.5
980,192 + CCNA_00900 0.86 -0.6
980,236 + CCNA_00900 0.88 -1.4
980,236 + CCNA_00900 0.88 -1.3
980,244 - CCNA_00900 0.88 -1.1
980,278 + CCNA_00900 0.90 -0.1
980,282 - +1.5
980,282 - +0.7
980,284 + -1.4
980,324 + -0.1
980,332 - -0.0
980,338 + +0.2
980,361 + +0.2
980,402 - +0.7
980,405 + +0.9
980,494 + -0.2
980,502 - -0.4
980,502 - +0.3
980,538 + -0.2
980,546 - +0.4
980,577 - -1.0
980,590 + +0.5
980,608 + -0.5
980,632 - -0.7
980,820 - -0.9
980,822 + +0.1
980,822 + -0.3
980,822 + -0.4
980,822 + -0.0
980,847 - -0.9
980,869 + CCNA_00901 0.12 -0.2
980,874 + CCNA_00901 0.12 -0.5
980,883 - CCNA_00901 0.14 -1.5
980,925 + CCNA_00901 0.19 +2.3
980,971 + CCNA_00901 0.24 -1.5
980,971 + CCNA_00901 0.24 -0.2
980,971 + CCNA_00901 0.24 +1.0
980,979 - CCNA_00901 0.25 +0.0
980,979 - CCNA_00901 0.25 -0.2
980,979 - CCNA_00901 0.25 -0.1
980,979 - CCNA_00901 0.25 -1.4
981,018 + CCNA_00901 0.30 +1.5
981,024 + CCNA_00901 0.30 +1.5
981,048 + CCNA_00901 0.33 -0.8
981,056 - CCNA_00901 0.34 -1.6
981,093 - CCNA_00901 0.39 -0.9
981,102 + CCNA_00901 0.40 +0.4
981,118 + CCNA_00901 0.42 -1.5
981,128 + CCNA_00901 0.43 -0.6
981,128 + CCNA_00901 0.43 -0.1
981,128 + CCNA_00901 0.43 +1.7
981,136 - CCNA_00901 0.44 -0.6
981,136 - CCNA_00901 0.44 -0.2
981,154 + CCNA_00901 0.46 -0.5
981,155 + CCNA_00901 0.46 -2.0
981,163 - CCNA_00901 0.47 -0.7
981,200 - CCNA_00901 0.51 +0.9
981,200 - CCNA_00901 0.51 -2.4
981,223 - CCNA_00901 0.54 -1.3
981,223 - CCNA_00901 0.54 -0.3
981,223 - CCNA_00901 0.54 +1.3
981,228 - CCNA_00901 0.55 +0.2
981,317 + CCNA_00901 0.65 +0.5
981,325 - CCNA_00901 0.66 +1.5
981,325 - CCNA_00901 0.66 -0.5
981,382 - CCNA_00901 0.73 -0.3
981,386 + CCNA_00901 0.74 +0.1
981,386 + CCNA_00901 0.74 -0.8
981,401 + CCNA_00901 0.75 -1.5
981,401 + CCNA_00901 0.75 -1.7
981,401 + CCNA_00901 0.75 +2.1
981,404 - CCNA_00901 0.76 +0.6
981,406 + CCNA_00901 0.76 +0.2
981,407 - CCNA_00901 0.76 +0.5
981,409 - CCNA_00901 0.76 -0.3
981,457 - CCNA_00901 0.82 -1.3
981,488 - CCNA_00901 0.86 -0.7
981,495 + CCNA_00901 0.87 -0.5
981,532 + +0.4
981,540 - +0.2
981,540 - -0.8
981,563 - -0.5
981,593 - +0.4
981,613 + +1.0
981,642 - -1.4
981,642 - -0.9
981,642 - -0.5
981,642 - +0.3
981,655 - +0.8
981,665 - +1.3
981,701 + -0.9
981,730 + -0.5
981,742 + +0.7
981,742 + +1.3
981,742 + +1.3
981,747 + +2.5
981,747 + +0.2
981,750 - +0.3
981,750 - +0.6
981,755 - -0.2
981,770 + +0.4
981,778 + +0.7
981,879 + -0.1
981,906 - -0.1
981,932 + -0.4
981,933 - +0.3
981,940 - +0.1
981,969 - -0.9
981,970 + -0.7
981,997 - -1.1
982,012 - -0.1
982,034 - CCNA_00902 0.10 -1.5
982,045 + CCNA_00902 0.11 -1.5
982,052 + CCNA_00902 0.12 +0.1
982,074 + CCNA_00902 0.14 -1.1
982,076 + CCNA_00902 0.14 +1.0
982,122 - CCNA_00902 0.19 -0.3
982,137 - CCNA_00902 0.21 -0.4
982,155 - CCNA_00902 0.22 -1.3
982,157 + CCNA_00902 0.23 +1.2
982,162 + CCNA_00902 0.23 -0.5
982,170 + CCNA_00902 0.24 -1.3
982,190 - CCNA_00902 0.26 +0.9
982,200 + CCNA_00902 0.27 -0.0
982,200 + CCNA_00902 0.27 -0.5
982,205 + CCNA_00902 0.28 +0.5
982,205 + CCNA_00902 0.28 -0.7
982,205 + CCNA_00902 0.28 +0.7
982,213 + CCNA_00902 0.28 -1.6
982,213 + CCNA_00902 0.28 +1.4
982,213 - CCNA_00902 0.28 +1.5
982,221 - CCNA_00902 0.29 +1.3
982,250 + CCNA_00902 0.32 +1.5
982,273 - CCNA_00902 0.34 +0.9
982,292 + CCNA_00902 0.36 -1.4
982,383 - CCNA_00902 0.46 -0.3
982,394 + CCNA_00902 0.47 -0.0
982,422 + +1.7
982,449 + CCNA_00902 0.52 +2.5
982,449 + CCNA_00902 0.52 -1.1
982,468 + CCNA_00902 0.54 -0.3
982,468 + CCNA_00902 0.54 -1.5
982,476 - CCNA_00902 0.55 -1.1
982,476 - CCNA_00902 0.55 +1.0
982,486 - CCNA_00902 0.56 -1.6
982,540 + CCNA_00902 0.62 -0.9
982,548 - CCNA_00902 0.62 +1.3
982,548 - CCNA_00902 0.62 -1.0
982,556 + CCNA_00902 0.63 -0.1
982,585 - CCNA_00902 0.66 -1.1

Or see this region's nucleotide sequence