Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00532

Experiment: PYE with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00530 and CCNA_00531 are separated by 45 nucleotidesCCNA_00531 and CCNA_00532 are separated by 423 nucleotidesCCNA_00532 and CCNA_00533 are separated by 22 nucleotides CCNA_00530: CCNA_00530 - LSU ribosomal protein L10P, at 542,581 to 543,099 _00530 CCNA_00531: CCNA_00531 - LSU ribosomal protein L12P (L7/L12), at 543,145 to 543,528 _00531 CCNA_00532: CCNA_00532 - hypothetical protein, RDD superfamily, at 543,952 to 544,842 _00532 CCNA_00533: CCNA_00533 - secreted polysaccharide polymerase hfsI, at 544,865 to 546,187 _00533 Position (kb) 543 544 545Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 543.625 kb on + strandat 543.633 kb on - strandat 543.684 kb on + strandat 543.692 kb on - strandat 543.692 kb on - strandat 543.692 kb on - strandat 543.705 kb on + strandat 543.705 kb on + strandat 543.706 kb on + strandat 543.728 kb on + strandat 543.736 kb on - strandat 543.746 kb on + strandat 543.746 kb on + strandat 543.754 kb on - strandat 543.754 kb on - strandat 543.774 kb on + strandat 543.827 kb on + strandat 543.828 kb on + strandat 543.893 kb on + strandat 543.923 kb on + strandat 543.941 kb on - strandat 543.947 kb on + strandat 543.955 kb on - strandat 543.969 kb on + strandat 543.974 kb on + strandat 543.982 kb on - strandat 543.982 kb on - strandat 543.983 kb on - strandat 543.993 kb on + strandat 543.993 kb on + strandat 543.993 kb on + strandat 544.011 kb on - strandat 544.026 kb on + strandat 544.026 kb on + strandat 544.034 kb on - strandat 544.039 kb on + strandat 544.044 kb on + strand, within CCNA_00532at 544.047 kb on - strand, within CCNA_00532at 544.085 kb on + strand, within CCNA_00532at 544.098 kb on + strand, within CCNA_00532at 544.114 kb on - strand, within CCNA_00532at 544.116 kb on - strand, within CCNA_00532at 544.142 kb on - strand, within CCNA_00532at 544.144 kb on - strand, within CCNA_00532at 544.144 kb on - strand, within CCNA_00532at 544.149 kb on - strand, within CCNA_00532at 544.163 kb on + strand, within CCNA_00532at 544.163 kb on + strand, within CCNA_00532at 544.163 kb on + strand, within CCNA_00532at 544.163 kb on + strand, within CCNA_00532at 544.166 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.196 kb on - strandat 544.220 kb on + strand, within CCNA_00532at 544.247 kb on - strand, within CCNA_00532at 544.320 kb on - strand, within CCNA_00532at 544.320 kb on - strand, within CCNA_00532at 544.351 kb on - strand, within CCNA_00532at 544.408 kb on - strand, within CCNA_00532at 544.421 kb on + strand, within CCNA_00532at 544.429 kb on - strand, within CCNA_00532at 544.429 kb on - strand, within CCNA_00532at 544.429 kb on - strand, within CCNA_00532at 544.472 kb on + strand, within CCNA_00532at 544.502 kb on + strand, within CCNA_00532at 544.531 kb on + strand, within CCNA_00532at 544.545 kb on - strand, within CCNA_00532at 544.556 kb on - strand, within CCNA_00532at 544.608 kb on + strand, within CCNA_00532at 544.608 kb on + strand, within CCNA_00532at 544.616 kb on - strand, within CCNA_00532at 544.621 kb on - strand, within CCNA_00532at 544.661 kb on - strand, within CCNA_00532at 544.678 kb on + strand, within CCNA_00532at 544.747 kb on + strand, within CCNA_00532at 544.755 kb on - strandat 544.755 kb on - strandat 544.755 kb on - strandat 544.757 kb on + strandat 544.758 kb on + strandat 544.765 kb on - strandat 544.767 kb on - strandat 544.771 kb on + strandat 544.779 kb on - strandat 544.799 kb on - strandat 544.801 kb on + strandat 544.836 kb on + strandat 544.839 kb on - strandat 544.844 kb on - strandat 544.844 kb on - strandat 544.863 kb on + strandat 544.863 kb on + strandat 544.868 kb on + strandat 544.871 kb on - strandat 544.871 kb on - strandat 544.871 kb on - strandat 544.871 kb on - strandat 544.871 kb on - strandat 544.894 kb on + strandat 544.909 kb on - strandat 544.910 kb on - strandat 544.938 kb on + strandat 544.943 kb on + strandat 544.943 kb on + strandat 544.946 kb on - strandat 544.951 kb on - strandat 544.965 kb on + strandat 544.983 kb on - strandat 544.983 kb on - strandat 544.988 kb on - strandat 544.991 kb on + strandat 544.993 kb on - strandat 544.993 kb on - strandat 545.045 kb on + strand, within CCNA_00533at 545.045 kb on + strand, within CCNA_00533at 545.045 kb on + strand, within CCNA_00533at 545.052 kb on + strand, within CCNA_00533at 545.077 kb on + strand, within CCNA_00533at 545.077 kb on + strand, within CCNA_00533at 545.104 kb on + strand, within CCNA_00533at 545.104 kb on + strand, within CCNA_00533at 545.110 kb on + strand, within CCNA_00533at 545.123 kb on + strand, within CCNA_00533at 545.123 kb on + strand, within CCNA_00533at 545.131 kb on - strand, within CCNA_00533at 545.131 kb on - strand, within CCNA_00533at 545.131 kb on - strand, within CCNA_00533at 545.131 kb on - strand, within CCNA_00533at 545.136 kb on - strand, within CCNA_00533at 545.143 kb on - strand, within CCNA_00533at 545.143 kb on - strand, within CCNA_00533at 545.167 kb on - strand, within CCNA_00533at 545.225 kb on + strand, within CCNA_00533at 545.233 kb on - strand, within CCNA_00533at 545.233 kb on - strand, within CCNA_00533at 545.281 kb on + strand, within CCNA_00533at 545.281 kb on + strand, within CCNA_00533at 545.284 kb on - strand, within CCNA_00533at 545.284 kb on - strand, within CCNA_00533at 545.299 kb on - strand, within CCNA_00533at 545.299 kb on - strand, within CCNA_00533at 545.337 kb on - strand, within CCNA_00533at 545.342 kb on - strand, within CCNA_00533at 545.392 kb on - strand, within CCNA_00533at 545.392 kb on - strandat 545.404 kb on + strand, within CCNA_00533at 545.417 kb on - strand, within CCNA_00533at 545.452 kb on - strand, within CCNA_00533at 545.483 kb on - strand, within CCNA_00533at 545.506 kb on + strand, within CCNA_00533at 545.572 kb on - strand, within CCNA_00533at 545.572 kb on - strand, within CCNA_00533at 545.572 kb on - strand, within CCNA_00533at 545.595 kb on + strand, within CCNA_00533at 545.603 kb on - strand, within CCNA_00533at 545.618 kb on + strand, within CCNA_00533at 545.655 kb on + strand, within CCNA_00533at 545.664 kb on - strand, within CCNA_00533at 545.664 kb on - strand, within CCNA_00533at 545.673 kb on + strand, within CCNA_00533at 545.673 kb on + strand, within CCNA_00533at 545.691 kb on - strand, within CCNA_00533at 545.696 kb on + strand, within CCNA_00533at 545.704 kb on - strand, within CCNA_00533at 545.704 kb on - strand, within CCNA_00533at 545.707 kb on + strand, within CCNA_00533at 545.713 kb on - strand, within CCNA_00533at 545.734 kb on + strand, within CCNA_00533at 545.734 kb on - strand, within CCNA_00533at 545.742 kb on + strand, within CCNA_00533at 545.742 kb on + strand, within CCNA_00533at 545.742 kb on + strand, within CCNA_00533at 545.743 kb on + strand, within CCNA_00533at 545.750 kb on - strand, within CCNA_00533at 545.778 kb on - strand, within CCNA_00533at 545.780 kb on + strand, within CCNA_00533at 545.780 kb on + strand, within CCNA_00533at 545.785 kb on + strand, within CCNA_00533at 545.788 kb on - strand, within CCNA_00533at 545.788 kb on - strand, within CCNA_00533at 545.793 kb on - strand, within CCNA_00533at 545.797 kb on - strand, within CCNA_00533at 545.798 kb on - strand, within CCNA_00533at 545.803 kb on + strand, within CCNA_00533at 545.816 kb on - strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM
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543,625 + +0.6
543,633 - +1.9
543,684 + +0.6
543,692 - -1.2
543,692 - +1.4
543,692 - +1.9
543,705 + +0.0
543,705 + -1.6
543,706 + -0.6
543,728 + -2.4
543,736 - +0.0
543,746 + -0.7
543,746 + -0.0
543,754 - -0.3
543,754 - -1.3
543,774 + -1.8
543,827 + +0.2
543,828 + +2.9
543,893 + +1.4
543,923 + -1.4
543,941 - +3.3
543,947 + -0.3
543,955 - +0.3
543,969 + +0.9
543,974 + -1.5
543,982 - +1.7
543,982 - -0.4
543,983 - -1.0
543,993 + +0.3
543,993 + +1.0
543,993 + +2.6
544,011 - +0.0
544,026 + -0.8
544,026 + -0.2
544,034 - -0.0
544,039 + -1.8
544,044 + CCNA_00532 0.10 -0.8
544,047 - CCNA_00532 0.11 +0.9
544,085 + CCNA_00532 0.15 -0.4
544,098 + CCNA_00532 0.16 +0.2
544,114 - CCNA_00532 0.18 -0.2
544,116 - CCNA_00532 0.18 +0.9
544,142 - CCNA_00532 0.21 -1.0
544,144 - CCNA_00532 0.22 +0.7
544,144 - CCNA_00532 0.22 +1.9
544,149 - CCNA_00532 0.22 +1.0
544,163 + CCNA_00532 0.24 +0.4
544,163 + CCNA_00532 0.24 -1.3
544,163 + CCNA_00532 0.24 +0.9
544,163 + CCNA_00532 0.24 -1.7
544,166 - CCNA_00532 0.24 +0.7
544,171 - CCNA_00532 0.25 -0.4
544,171 - CCNA_00532 0.25 -0.9
544,171 - CCNA_00532 0.25 -1.2
544,171 - CCNA_00532 0.25 +2.6
544,171 - CCNA_00532 0.25 -0.1
544,171 - CCNA_00532 0.25 -0.0
544,196 - +1.6
544,220 + CCNA_00532 0.30 -2.0
544,247 - CCNA_00532 0.33 +0.4
544,320 - CCNA_00532 0.41 -0.3
544,320 - CCNA_00532 0.41 -1.2
544,351 - CCNA_00532 0.45 -0.6
544,408 - CCNA_00532 0.51 -1.4
544,421 + CCNA_00532 0.53 -0.9
544,429 - CCNA_00532 0.54 -1.4
544,429 - CCNA_00532 0.54 -2.7
544,429 - CCNA_00532 0.54 -0.3
544,472 + CCNA_00532 0.58 -1.1
544,502 + CCNA_00532 0.62 -0.7
544,531 + CCNA_00532 0.65 -1.2
544,545 - CCNA_00532 0.67 -1.8
544,556 - CCNA_00532 0.68 +0.5
544,608 + CCNA_00532 0.74 -1.8
544,608 + CCNA_00532 0.74 -0.8
544,616 - CCNA_00532 0.75 -1.3
544,621 - CCNA_00532 0.75 -2.0
544,661 - CCNA_00532 0.80 -0.8
544,678 + CCNA_00532 0.81 +0.1
544,747 + CCNA_00532 0.89 +1.4
544,755 - -0.3
544,755 - +1.4
544,755 - -0.3
544,757 + -1.0
544,758 + -0.1
544,765 - -0.2
544,767 - +0.9
544,771 + -1.3
544,779 - -1.6
544,799 - +0.2
544,801 + -0.1
544,836 + -0.9
544,839 - -1.4
544,844 - +0.7
544,844 - +0.7
544,863 + -1.1
544,863 + +0.0
544,868 + +0.3
544,871 - -0.4
544,871 - +0.0
544,871 - +0.3
544,871 - -0.6
544,871 - -1.3
544,894 + -1.0
544,909 - -0.3
544,910 - +0.7
544,938 + +0.5
544,943 + -2.1
544,943 + -0.5
544,946 - +1.6
544,951 - +4.2
544,965 + +0.5
544,983 - +0.3
544,983 - -0.6
544,988 - +0.3
544,991 + -0.2
544,993 - -0.6
544,993 - +0.6
545,045 + CCNA_00533 0.14 +1.4
545,045 + CCNA_00533 0.14 +0.7
545,045 + CCNA_00533 0.14 +0.2
545,052 + CCNA_00533 0.14 +1.9
545,077 + CCNA_00533 0.16 +1.6
545,077 + CCNA_00533 0.16 +1.9
545,104 + CCNA_00533 0.18 +2.9
545,104 + CCNA_00533 0.18 +1.3
545,110 + CCNA_00533 0.19 +0.1
545,123 + CCNA_00533 0.20 -1.2
545,123 + CCNA_00533 0.20 -0.1
545,131 - CCNA_00533 0.20 -1.1
545,131 - CCNA_00533 0.20 +2.2
545,131 - CCNA_00533 0.20 +0.9
545,131 - CCNA_00533 0.20 -1.0
545,136 - CCNA_00533 0.20 -0.6
545,143 - CCNA_00533 0.21 +1.1
545,143 - CCNA_00533 0.21 -0.2
545,167 - CCNA_00533 0.23 +0.4
545,225 + CCNA_00533 0.27 +2.0
545,233 - CCNA_00533 0.28 +0.3
545,233 - CCNA_00533 0.28 -0.3
545,281 + CCNA_00533 0.31 -2.1
545,281 + CCNA_00533 0.31 +0.1
545,284 - CCNA_00533 0.32 -0.4
545,284 - CCNA_00533 0.32 -1.0
545,299 - CCNA_00533 0.33 -1.5
545,299 - CCNA_00533 0.33 +0.9
545,337 - CCNA_00533 0.36 -1.2
545,342 - CCNA_00533 0.36 +1.4
545,392 - CCNA_00533 0.40 +1.6
545,392 - +1.6
545,404 + CCNA_00533 0.41 +1.5
545,417 - CCNA_00533 0.42 -1.2
545,452 - CCNA_00533 0.44 +0.0
545,483 - CCNA_00533 0.47 -0.9
545,506 + CCNA_00533 0.48 -1.3
545,572 - CCNA_00533 0.53 -2.2
545,572 - CCNA_00533 0.53 -0.9
545,572 - CCNA_00533 0.53 +0.8
545,595 + CCNA_00533 0.55 -1.4
545,603 - CCNA_00533 0.56 -0.4
545,618 + CCNA_00533 0.57 +0.8
545,655 + CCNA_00533 0.60 -0.7
545,664 - CCNA_00533 0.60 +0.6
545,664 - CCNA_00533 0.60 -1.2
545,673 + CCNA_00533 0.61 +2.3
545,673 + CCNA_00533 0.61 +0.0
545,691 - CCNA_00533 0.62 -1.5
545,696 + CCNA_00533 0.63 +0.7
545,704 - CCNA_00533 0.63 +0.1
545,704 - CCNA_00533 0.63 -0.2
545,707 + CCNA_00533 0.64 -0.3
545,713 - CCNA_00533 0.64 -0.2
545,734 + CCNA_00533 0.66 -1.1
545,734 - CCNA_00533 0.66 -0.6
545,742 + CCNA_00533 0.66 -0.5
545,742 + CCNA_00533 0.66 +1.3
545,742 + CCNA_00533 0.66 -0.1
545,743 + CCNA_00533 0.66 +0.6
545,750 - CCNA_00533 0.67 -0.1
545,778 - CCNA_00533 0.69 -0.1
545,780 + CCNA_00533 0.69 -1.1
545,780 + CCNA_00533 0.69 +2.3
545,785 + CCNA_00533 0.70 +2.2
545,788 - CCNA_00533 0.70 -0.5
545,788 - CCNA_00533 0.70 -1.3
545,793 - CCNA_00533 0.70 -1.0
545,797 - CCNA_00533 0.70 +0.7
545,798 - CCNA_00533 0.71 -0.1
545,803 + CCNA_00533 0.71 -0.9
545,816 - CCNA_00533 0.72 +3.0
545,838 + CCNA_00533 0.74 +2.6
545,838 + CCNA_00533 0.74 -1.1
545,838 + CCNA_00533 0.74 -1.3
545,838 + CCNA_00533 0.74 -2.4
545,838 + CCNA_00533 0.74 +2.2

Or see this region's nucleotide sequence