Experiment: PYE with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00281 and CCNA_00282 are separated by 91 nucleotides CCNA_00282 and CCNA_00283 are separated by 117 nucleotides CCNA_00283 and CCNA_00284 overlap by 4 nucleotides
CCNA_00281: CCNA_00281 - methionyl-tRNA formyltransferase, at 293,641 to 294,567
_00281
CCNA_00282: CCNA_00282 - conserved cell surface protein, at 294,659 to 294,991
_00282
CCNA_00283: CCNA_00283 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 295,109 to 295,969
_00283
CCNA_00284: CCNA_00284 - pyrimidine 5'-nucleotidase family protein, at 295,966 to 296,631
_00284
Position (kb) 294
295 Strain fitness (log2 ratio) -2
-1
0
1
2 at 293.660 kb on - strand at 293.662 kb on - strand at 293.804 kb on + strand, within CCNA_00281 at 293.961 kb on + strand, within CCNA_00281 at 294.289 kb on + strand, within CCNA_00281 at 294.419 kb on + strand, within CCNA_00281 at 294.609 kb on + strand at 294.609 kb on + strand at 294.617 kb on - strand at 294.632 kb on + strand at 294.632 kb on + strand at 294.640 kb on - strand at 294.640 kb on - strand at 294.650 kb on + strand at 294.655 kb on + strand at 294.663 kb on - strand at 294.663 kb on - strand at 294.677 kb on - strand at 294.745 kb on + strand, within CCNA_00282 at 294.745 kb on + strand, within CCNA_00282 at 294.746 kb on + strand, within CCNA_00282 at 294.791 kb on + strand, within CCNA_00282 at 294.799 kb on - strand, within CCNA_00282 at 294.849 kb on + strand, within CCNA_00282 at 294.869 kb on + strand, within CCNA_00282 at 294.877 kb on - strand, within CCNA_00282 at 294.877 kb on - strand, within CCNA_00282 at 294.912 kb on - strand, within CCNA_00282 at 294.912 kb on - strand, within CCNA_00282 at 294.912 kb on - strand, within CCNA_00282 at 294.994 kb on - strand at 294.995 kb on - strand at 295.041 kb on - strand at 295.050 kb on - strand at 295.078 kb on + strand at 295.107 kb on + strand at 295.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM remove 293,660 - -0.4 293,662 - -1.1 293,804 + CCNA_00281 0.18 +0.7 293,961 + CCNA_00281 0.35 +2.6 294,289 + CCNA_00281 0.70 +2.0 294,419 + CCNA_00281 0.84 +0.7 294,609 + -1.1 294,609 + -0.2 294,617 - -0.3 294,632 + -0.9 294,632 + -0.2 294,640 - -0.3 294,640 - +0.6 294,650 + -1.0 294,655 + +0.2 294,663 - -0.0 294,663 - +1.5 294,677 - -1.3 294,745 + CCNA_00282 0.26 -0.2 294,745 + CCNA_00282 0.26 -1.6 294,746 + CCNA_00282 0.26 -0.6 294,791 + CCNA_00282 0.40 -0.5 294,799 - CCNA_00282 0.42 -1.9 294,849 + CCNA_00282 0.57 -1.0 294,869 + CCNA_00282 0.63 +0.5 294,877 - CCNA_00282 0.65 +0.0 294,877 - CCNA_00282 0.65 -2.0 294,912 - CCNA_00282 0.76 -1.8 294,912 - CCNA_00282 0.76 -0.6 294,912 - CCNA_00282 0.76 -0.6 294,994 - -0.0 294,995 - -0.4 295,041 - -0.7 295,050 - -1.0 295,078 + -0.4 295,107 + -1.3 295,962 - +0.9
Or see this region's nucleotide sequence