Experiment: sodium fluoride 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_103 and Ac3H11_104 overlap by 1 nucleotides Ac3H11_104 and Ac3H11_105 overlap by 1 nucleotides Ac3H11_105 and Ac3H11_106 are separated by 63 nucleotides
Ac3H11_103 - Benzoate transport, inner-membrane translocator precursor, at 106,912 to 107,961
_103
Ac3H11_104 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 107,961 to 108,710
_104
Ac3H11_105 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 108,710 to 109,414
_105
Ac3H11_106 - ATP-dependent protease La (EC 3.4.21.53) Type II, at 109,478 to 111,970
_106
Position (kb) 108
109
110 Strain fitness (log2 ratio) -2
-1
0
1
2 at 107.763 kb on + strand, within Ac3H11_103 at 107.764 kb on - strand, within Ac3H11_103 at 107.776 kb on + strand, within Ac3H11_103 at 107.776 kb on + strand, within Ac3H11_103 at 107.927 kb on + strand at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.122 kb on - strand, within Ac3H11_104 at 108.122 kb on - strand, within Ac3H11_104 at 108.372 kb on - strand, within Ac3H11_104 at 108.372 kb on - strand, within Ac3H11_104 at 108.691 kb on - strand at 108.768 kb on + strand at 108.768 kb on + strand at 108.769 kb on - strand at 108.827 kb on - strand, within Ac3H11_105 at 108.904 kb on + strand, within Ac3H11_105 at 108.904 kb on + strand, within Ac3H11_105 at 108.905 kb on - strand, within Ac3H11_105 at 108.905 kb on - strand, within Ac3H11_105 at 109.068 kb on - strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.329 kb on - strand, within Ac3H11_105 at 109.330 kb on + strand, within Ac3H11_105 at 109.330 kb on + strand, within Ac3H11_105 at 109.330 kb on + strand, within Ac3H11_105 at 109.330 kb on + strand, within Ac3H11_105 at 109.331 kb on - strand, within Ac3H11_105 at 109.331 kb on - strand, within Ac3H11_105 at 109.335 kb on + strand, within Ac3H11_105 at 109.335 kb on + strand, within Ac3H11_105 at 109.335 kb on + strand, within Ac3H11_105 at 109.336 kb on - strand, within Ac3H11_105 at 109.353 kb on + strand at 109.353 kb on + strand at 109.354 kb on - strand at 109.701 kb on + strand at 109.702 kb on - strand at 109.702 kb on - strand at 109.702 kb on - strand at 109.951 kb on - strand, within Ac3H11_106 at 109.951 kb on - strand, within Ac3H11_106 at 109.992 kb on + strand, within Ac3H11_106 at 109.993 kb on - strand, within Ac3H11_106 at 110.061 kb on + strand, within Ac3H11_106 at 110.061 kb on + strand, within Ac3H11_106 at 110.107 kb on + strand, within Ac3H11_106 at 110.108 kb on - strand, within Ac3H11_106
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 50 mM remove 107,763 + Ac3H11_103 0.81 -1.2 107,764 - Ac3H11_103 0.81 -0.0 107,776 + Ac3H11_103 0.82 -1.5 107,776 + Ac3H11_103 0.82 +1.0 107,927 + -0.4 108,121 + Ac3H11_104 0.21 -2.3 108,121 + Ac3H11_104 0.21 +1.5 108,121 + Ac3H11_104 0.21 +1.3 108,121 + Ac3H11_104 0.21 +0.1 108,121 + Ac3H11_104 0.21 -0.3 108,122 - Ac3H11_104 0.21 +0.6 108,122 - Ac3H11_104 0.21 +0.5 108,372 - Ac3H11_104 0.55 +0.3 108,372 - Ac3H11_104 0.55 -1.8 108,691 - -0.2 108,768 + +0.2 108,768 + +0.7 108,769 - +0.2 108,827 - Ac3H11_105 0.17 -1.1 108,904 + Ac3H11_105 0.28 -0.8 108,904 + Ac3H11_105 0.28 +0.2 108,905 - Ac3H11_105 0.28 +0.8 108,905 - Ac3H11_105 0.28 +0.2 109,068 - Ac3H11_105 0.51 -0.3 109,328 + Ac3H11_105 0.88 +0.3 109,328 + Ac3H11_105 0.88 -1.3 109,328 + Ac3H11_105 0.88 +1.3 109,328 + Ac3H11_105 0.88 +0.2 109,328 + Ac3H11_105 0.88 +0.7 109,329 - Ac3H11_105 0.88 +0.2 109,330 + Ac3H11_105 0.88 +0.9 109,330 + Ac3H11_105 0.88 -1.0 109,330 + Ac3H11_105 0.88 +0.9 109,330 + Ac3H11_105 0.88 +2.5 109,331 - Ac3H11_105 0.88 +1.1 109,331 - Ac3H11_105 0.88 +0.4 109,335 + Ac3H11_105 0.89 +0.1 109,335 + Ac3H11_105 0.89 -0.5 109,335 + Ac3H11_105 0.89 -1.2 109,336 - Ac3H11_105 0.89 +0.0 109,353 + +1.3 109,353 + +0.7 109,354 - -0.3 109,701 + +0.2 109,702 - -0.1 109,702 - -0.1 109,702 - -1.3 109,951 - Ac3H11_106 0.19 -0.2 109,951 - Ac3H11_106 0.19 -0.1 109,992 + Ac3H11_106 0.21 -0.9 109,993 - Ac3H11_106 0.21 -0.3 110,061 + Ac3H11_106 0.23 +0.0 110,061 + Ac3H11_106 0.23 -0.4 110,107 + Ac3H11_106 0.25 +0.1 110,108 - Ac3H11_106 0.25 -0.4
Or see this region's nucleotide sequence