Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25530 and AZOBR_RS25535 are separated by 49 nucleotides AZOBR_RS25535 and AZOBR_RS25540 are separated by 70 nucleotides
AZOBR_RS25530: AZOBR_RS25530 - sugar aminotransferase, at 777,643 to 778,683
_RS25530
AZOBR_RS25535: AZOBR_RS25535 - hypothetical protein, at 778,733 to 779,932
_RS25535
AZOBR_RS25540: AZOBR_RS25540 - putative acetyltransferase protein, at 780,003 to 781,178
_RS25540
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1 at 778.040 kb on + strand, within AZOBR_RS25530 at 778.502 kb on + strand, within AZOBR_RS25530 at 778.711 kb on + strand at 779.002 kb on - strand, within AZOBR_RS25535 at 779.098 kb on - strand, within AZOBR_RS25535 at 779.278 kb on - strand, within AZOBR_RS25535 at 779.278 kb on - strand, within AZOBR_RS25535 at 779.590 kb on - strand, within AZOBR_RS25535 at 779.590 kb on - strand, within AZOBR_RS25535 at 779.799 kb on + strand, within AZOBR_RS25535 at 780.025 kb on + strand at 780.025 kb on + strand at 780.026 kb on - strand at 780.026 kb on - strand at 780.241 kb on + strand, within AZOBR_RS25540 at 780.241 kb on + strand, within AZOBR_RS25540 at 780.242 kb on - strand, within AZOBR_RS25540 at 780.646 kb on + strand, within AZOBR_RS25540 at 780.734 kb on - strand, within AZOBR_RS25540 at 780.734 kb on - strand, within AZOBR_RS25540 at 780.763 kb on + strand, within AZOBR_RS25540 at 780.779 kb on - strand, within AZOBR_RS25540 at 780.779 kb on - strand, within AZOBR_RS25540
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 778,040 + AZOBR_RS25530 0.38 -1.5 778,502 + AZOBR_RS25530 0.83 -0.5 778,711 + +0.2 779,002 - AZOBR_RS25535 0.22 +0.3 779,098 - AZOBR_RS25535 0.30 -0.3 779,278 - AZOBR_RS25535 0.45 -0.2 779,278 - AZOBR_RS25535 0.45 -1.5 779,590 - AZOBR_RS25535 0.71 -0.1 779,590 - AZOBR_RS25535 0.71 +0.3 779,799 + AZOBR_RS25535 0.89 +0.9 780,025 + -0.2 780,025 + +0.8 780,026 - +0.4 780,026 - +0.8 780,241 + AZOBR_RS25540 0.20 +1.3 780,241 + AZOBR_RS25540 0.20 -2.4 780,242 - AZOBR_RS25540 0.20 +0.4 780,646 + AZOBR_RS25540 0.55 -0.4 780,734 - AZOBR_RS25540 0.62 +0.3 780,734 - AZOBR_RS25540 0.62 +0.1 780,763 + AZOBR_RS25540 0.65 -0.5 780,779 - AZOBR_RS25540 0.66 +0.1 780,779 - AZOBR_RS25540 0.66 +0.2
Or see this region's nucleotide sequence