Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27855

Experiment: Tetracycline 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27850 and AO353_27855 overlap by 4 nucleotidesAO353_27855 and AO353_27860 are separated by 281 nucleotides AO353_27850: AO353_27850 - multidrug RND transporter, at 6,073,390 to 6,074,865 _27850 AO353_27855: AO353_27855 - MarR family transcriptional regulator, at 6,074,862 to 6,075,335 _27855 AO353_27860: AO353_27860 - hypothetical protein, at 6,075,617 to 6,079,288 _27860 Position (kb) 6074 6075 6076Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6073.996 kb on + strand, within AO353_27850at 6073.996 kb on + strand, within AO353_27850at 6073.997 kb on - strand, within AO353_27850at 6074.279 kb on + strand, within AO353_27850at 6074.280 kb on - strand, within AO353_27850at 6074.309 kb on + strand, within AO353_27850at 6074.309 kb on + strand, within AO353_27850at 6074.310 kb on - strand, within AO353_27850at 6074.310 kb on - strand, within AO353_27850at 6074.432 kb on + strand, within AO353_27850at 6074.432 kb on + strand, within AO353_27850at 6074.432 kb on + strand, within AO353_27850at 6074.432 kb on + strand, within AO353_27850at 6074.432 kb on + strand, within AO353_27850at 6074.433 kb on - strand, within AO353_27850at 6074.433 kb on - strand, within AO353_27850at 6074.433 kb on - strand, within AO353_27850at 6074.433 kb on - strand, within AO353_27850at 6074.433 kb on - strand, within AO353_27850at 6074.468 kb on + strand, within AO353_27850at 6074.468 kb on + strand, within AO353_27850at 6074.469 kb on - strand, within AO353_27850at 6074.469 kb on - strand, within AO353_27850at 6074.469 kb on - strand, within AO353_27850at 6074.469 kb on - strand, within AO353_27850at 6074.469 kb on - strand, within AO353_27850at 6074.469 kb on - strand, within AO353_27850at 6074.570 kb on + strand, within AO353_27850at 6074.792 kb on + strandat 6074.792 kb on + strandat 6074.792 kb on + strandat 6074.793 kb on - strandat 6074.793 kb on - strandat 6074.793 kb on - strandat 6074.793 kb on - strandat 6074.793 kb on - strandat 6074.856 kb on + strandat 6074.997 kb on - strand, within AO353_27855at 6075.040 kb on - strand, within AO353_27855at 6075.048 kb on + strand, within AO353_27855at 6075.348 kb on + strandat 6075.349 kb on - strandat 6075.369 kb on + strandat 6075.369 kb on + strandat 6075.370 kb on - strandat 6075.389 kb on + strandat 6075.412 kb on - strandat 6075.427 kb on + strandat 6075.438 kb on + strandat 6075.438 kb on + strandat 6075.438 kb on + strandat 6075.438 kb on + strandat 6075.439 kb on - strandat 6075.439 kb on - strandat 6075.439 kb on - strandat 6075.439 kb on - strandat 6075.451 kb on + strandat 6075.451 kb on + strandat 6075.451 kb on + strandat 6075.452 kb on - strandat 6075.452 kb on - strandat 6075.618 kb on + strandat 6075.618 kb on + strandat 6075.618 kb on + strandat 6075.618 kb on + strandat 6075.619 kb on - strandat 6075.619 kb on - strandat 6075.619 kb on - strandat 6075.633 kb on + strandat 6075.634 kb on - strandat 6075.634 kb on - strandat 6075.640 kb on + strandat 6075.679 kb on - strandat 6075.679 kb on - strandat 6075.700 kb on - strandat 6075.732 kb on - strandat 6075.960 kb on + strandat 6075.960 kb on + strandat 6075.960 kb on + strandat 6075.961 kb on - strandat 6075.961 kb on - strandat 6075.961 kb on - strandat 6075.961 kb on - strandat 6075.961 kb on - strandat 6076.089 kb on + strand, within AO353_27860at 6076.153 kb on - strand, within AO353_27860

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
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6,073,996 + AO353_27850 0.41 -0.1
6,073,996 + AO353_27850 0.41 +0.4
6,073,997 - AO353_27850 0.41 -1.8
6,074,279 + AO353_27850 0.60 +1.3
6,074,280 - AO353_27850 0.60 -0.3
6,074,309 + AO353_27850 0.62 +0.0
6,074,309 + AO353_27850 0.62 -0.2
6,074,310 - AO353_27850 0.62 -1.6
6,074,310 - AO353_27850 0.62 +2.0
6,074,432 + AO353_27850 0.71 -1.0
6,074,432 + AO353_27850 0.71 -0.6
6,074,432 + AO353_27850 0.71 -0.2
6,074,432 + AO353_27850 0.71 +0.2
6,074,432 + AO353_27850 0.71 +0.2
6,074,433 - AO353_27850 0.71 +0.3
6,074,433 - AO353_27850 0.71 +1.2
6,074,433 - AO353_27850 0.71 -0.3
6,074,433 - AO353_27850 0.71 +0.4
6,074,433 - AO353_27850 0.71 +0.5
6,074,468 + AO353_27850 0.73 -1.0
6,074,468 + AO353_27850 0.73 -0.1
6,074,469 - AO353_27850 0.73 -0.5
6,074,469 - AO353_27850 0.73 -1.1
6,074,469 - AO353_27850 0.73 -0.2
6,074,469 - AO353_27850 0.73 +0.0
6,074,469 - AO353_27850 0.73 -0.1
6,074,469 - AO353_27850 0.73 +1.2
6,074,570 + AO353_27850 0.80 -1.8
6,074,792 + -0.2
6,074,792 + -0.5
6,074,792 + -2.1
6,074,793 - +0.8
6,074,793 - +0.6
6,074,793 - +0.2
6,074,793 - -0.0
6,074,793 - +1.5
6,074,856 + -0.1
6,074,997 - AO353_27855 0.28 -1.4
6,075,040 - AO353_27855 0.38 -0.9
6,075,048 + AO353_27855 0.39 -0.8
6,075,348 + -0.9
6,075,349 - -1.1
6,075,369 + -0.0
6,075,369 + -0.4
6,075,370 - -1.9
6,075,389 + -0.6
6,075,412 - -1.3
6,075,427 + -1.5
6,075,438 + -1.0
6,075,438 + -0.0
6,075,438 + +0.5
6,075,438 + -0.7
6,075,439 - +0.4
6,075,439 - -0.5
6,075,439 - -0.4
6,075,439 - -3.1
6,075,451 + -0.4
6,075,451 + -0.2
6,075,451 + +1.7
6,075,452 - -2.4
6,075,452 - -1.8
6,075,618 + -0.9
6,075,618 + +1.2
6,075,618 + -0.6
6,075,618 + +1.2
6,075,619 - +1.4
6,075,619 - -0.8
6,075,619 - -1.0
6,075,633 + -0.8
6,075,634 - +0.1
6,075,634 - +1.2
6,075,640 + -0.5
6,075,679 - -1.4
6,075,679 - -0.1
6,075,700 - +0.9
6,075,732 - +0.1
6,075,960 + +1.2
6,075,960 + -1.3
6,075,960 + -0.8
6,075,961 - +1.4
6,075,961 - +1.4
6,075,961 - -0.3
6,075,961 - -0.4
6,075,961 - +1.2
6,076,089 + AO353_27860 0.13 -0.7
6,076,153 - AO353_27860 0.15 -0.8

Or see this region's nucleotide sequence