Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27850 and AO353_27855 overlap by 4 nucleotides AO353_27855 and AO353_27860 are separated by 281 nucleotides
AO353_27850: AO353_27850 - multidrug RND transporter, at 6,073,390 to 6,074,865
_27850
AO353_27855: AO353_27855 - MarR family transcriptional regulator, at 6,074,862 to 6,075,335
_27855
AO353_27860: AO353_27860 - hypothetical protein, at 6,075,617 to 6,079,288
_27860
Position (kb)
6074
6075
6076 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6073.996 kb on + strand, within AO353_27850 at 6073.996 kb on + strand, within AO353_27850 at 6073.997 kb on - strand, within AO353_27850 at 6074.279 kb on + strand, within AO353_27850 at 6074.280 kb on - strand, within AO353_27850 at 6074.309 kb on + strand, within AO353_27850 at 6074.309 kb on + strand, within AO353_27850 at 6074.310 kb on - strand, within AO353_27850 at 6074.310 kb on - strand, within AO353_27850 at 6074.432 kb on + strand, within AO353_27850 at 6074.432 kb on + strand, within AO353_27850 at 6074.432 kb on + strand, within AO353_27850 at 6074.432 kb on + strand, within AO353_27850 at 6074.432 kb on + strand, within AO353_27850 at 6074.433 kb on - strand, within AO353_27850 at 6074.433 kb on - strand, within AO353_27850 at 6074.433 kb on - strand, within AO353_27850 at 6074.433 kb on - strand, within AO353_27850 at 6074.433 kb on - strand, within AO353_27850 at 6074.468 kb on + strand, within AO353_27850 at 6074.468 kb on + strand, within AO353_27850 at 6074.469 kb on - strand, within AO353_27850 at 6074.469 kb on - strand, within AO353_27850 at 6074.469 kb on - strand, within AO353_27850 at 6074.469 kb on - strand, within AO353_27850 at 6074.469 kb on - strand, within AO353_27850 at 6074.469 kb on - strand, within AO353_27850 at 6074.570 kb on + strand, within AO353_27850 at 6074.792 kb on + strand at 6074.792 kb on + strand at 6074.792 kb on + strand at 6074.793 kb on - strand at 6074.793 kb on - strand at 6074.793 kb on - strand at 6074.793 kb on - strand at 6074.793 kb on - strand at 6074.856 kb on + strand at 6074.997 kb on - strand, within AO353_27855 at 6075.040 kb on - strand, within AO353_27855 at 6075.048 kb on + strand, within AO353_27855 at 6075.348 kb on + strand at 6075.349 kb on - strand at 6075.369 kb on + strand at 6075.369 kb on + strand at 6075.370 kb on - strand at 6075.389 kb on + strand at 6075.412 kb on - strand at 6075.427 kb on + strand at 6075.438 kb on + strand at 6075.438 kb on + strand at 6075.438 kb on + strand at 6075.438 kb on + strand at 6075.439 kb on - strand at 6075.439 kb on - strand at 6075.439 kb on - strand at 6075.439 kb on - strand at 6075.451 kb on + strand at 6075.451 kb on + strand at 6075.451 kb on + strand at 6075.452 kb on - strand at 6075.452 kb on - strand at 6075.618 kb on + strand at 6075.618 kb on + strand at 6075.618 kb on + strand at 6075.618 kb on + strand at 6075.619 kb on - strand at 6075.619 kb on - strand at 6075.619 kb on - strand at 6075.633 kb on + strand at 6075.634 kb on - strand at 6075.634 kb on - strand at 6075.640 kb on + strand at 6075.679 kb on - strand at 6075.679 kb on - strand at 6075.700 kb on - strand at 6075.732 kb on - strand at 6075.960 kb on + strand at 6075.960 kb on + strand at 6075.960 kb on + strand at 6075.961 kb on - strand at 6075.961 kb on - strand at 6075.961 kb on - strand at 6075.961 kb on - strand at 6075.961 kb on - strand at 6076.089 kb on + strand, within AO353_27860 at 6076.153 kb on - strand, within AO353_27860
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 6,073,996 + AO353_27850 0.41 -0.1 6,073,996 + AO353_27850 0.41 +0.4 6,073,997 - AO353_27850 0.41 -1.8 6,074,279 + AO353_27850 0.60 +1.3 6,074,280 - AO353_27850 0.60 -0.3 6,074,309 + AO353_27850 0.62 +0.0 6,074,309 + AO353_27850 0.62 -0.2 6,074,310 - AO353_27850 0.62 -1.6 6,074,310 - AO353_27850 0.62 +2.0 6,074,432 + AO353_27850 0.71 -1.0 6,074,432 + AO353_27850 0.71 -0.6 6,074,432 + AO353_27850 0.71 -0.2 6,074,432 + AO353_27850 0.71 +0.2 6,074,432 + AO353_27850 0.71 +0.2 6,074,433 - AO353_27850 0.71 +0.3 6,074,433 - AO353_27850 0.71 +1.2 6,074,433 - AO353_27850 0.71 -0.3 6,074,433 - AO353_27850 0.71 +0.4 6,074,433 - AO353_27850 0.71 +0.5 6,074,468 + AO353_27850 0.73 -1.0 6,074,468 + AO353_27850 0.73 -0.1 6,074,469 - AO353_27850 0.73 -0.5 6,074,469 - AO353_27850 0.73 -1.1 6,074,469 - AO353_27850 0.73 -0.2 6,074,469 - AO353_27850 0.73 +0.0 6,074,469 - AO353_27850 0.73 -0.1 6,074,469 - AO353_27850 0.73 +1.2 6,074,570 + AO353_27850 0.80 -1.8 6,074,792 + -0.2 6,074,792 + -0.5 6,074,792 + -2.1 6,074,793 - +0.8 6,074,793 - +0.6 6,074,793 - +0.2 6,074,793 - -0.0 6,074,793 - +1.5 6,074,856 + -0.1 6,074,997 - AO353_27855 0.28 -1.4 6,075,040 - AO353_27855 0.38 -0.9 6,075,048 + AO353_27855 0.39 -0.8 6,075,348 + -0.9 6,075,349 - -1.1 6,075,369 + -0.0 6,075,369 + -0.4 6,075,370 - -1.9 6,075,389 + -0.6 6,075,412 - -1.3 6,075,427 + -1.5 6,075,438 + -1.0 6,075,438 + -0.0 6,075,438 + +0.5 6,075,438 + -0.7 6,075,439 - +0.4 6,075,439 - -0.5 6,075,439 - -0.4 6,075,439 - -3.1 6,075,451 + -0.4 6,075,451 + -0.2 6,075,451 + +1.7 6,075,452 - -2.4 6,075,452 - -1.8 6,075,618 + -0.9 6,075,618 + +1.2 6,075,618 + -0.6 6,075,618 + +1.2 6,075,619 - +1.4 6,075,619 - -0.8 6,075,619 - -1.0 6,075,633 + -0.8 6,075,634 - +0.1 6,075,634 - +1.2 6,075,640 + -0.5 6,075,679 - -1.4 6,075,679 - -0.1 6,075,700 - +0.9 6,075,732 - +0.1 6,075,960 + +1.2 6,075,960 + -1.3 6,075,960 + -0.8 6,075,961 - +1.4 6,075,961 - +1.4 6,075,961 - -0.3 6,075,961 - -0.4 6,075,961 - +1.2 6,076,089 + AO353_27860 0.13 -0.7 6,076,153 - AO353_27860 0.15 -0.8
Or see this region's nucleotide sequence