Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26325 and AO353_26330 are separated by 1 nucleotides AO353_26330 and AO353_26335 are separated by 161 nucleotides AO353_26335 and AO353_26340 are separated by 156 nucleotides AO353_26340 and AO353_26345 are separated by 47 nucleotides
AO353_26325: AO353_26325 - phage replication protein, at 5,780,758 to 5,781,741
_26325
AO353_26330: AO353_26330 - Rha family transcriptional regulator, at 5,781,743 to 5,782,549
_26330
AO353_26335: AO353_26335 - hypothetical protein, at 5,782,711 to 5,782,917
_26335
AO353_26340: AO353_26340 - hypothetical protein, at 5,783,074 to 5,783,796
_26340
AO353_26345: AO353_26345 - hypothetical protein, at 5,783,844 to 5,784,101
_26345
Position (kb) 5782
5783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5781.734 kb on + strand at 5781.734 kb on + strand at 5781.734 kb on + strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.789 kb on + strand at 5781.789 kb on + strand at 5781.790 kb on - strand at 5781.844 kb on - strand, within AO353_26330 at 5781.922 kb on - strand, within AO353_26330 at 5781.922 kb on - strand, within AO353_26330 at 5782.199 kb on + strand, within AO353_26330 at 5782.199 kb on + strand, within AO353_26330 at 5782.273 kb on + strand, within AO353_26330 at 5782.276 kb on - strand, within AO353_26330 at 5782.317 kb on + strand, within AO353_26330 at 5782.317 kb on + strand at 5782.317 kb on + strand, within AO353_26330 at 5782.318 kb on - strand, within AO353_26330 at 5782.318 kb on - strand, within AO353_26330 at 5782.318 kb on - strand, within AO353_26330 at 5782.318 kb on - strand, within AO353_26330 at 5782.318 kb on - strand, within AO353_26330 at 5782.318 kb on - strand, within AO353_26330 at 5782.318 kb on - strand, within AO353_26330 at 5782.350 kb on + strand, within AO353_26330 at 5782.351 kb on - strand, within AO353_26330 at 5782.351 kb on - strand, within AO353_26330 at 5782.351 kb on - strand, within AO353_26330 at 5782.370 kb on + strand, within AO353_26330 at 5782.370 kb on + strand, within AO353_26330 at 5782.371 kb on - strand, within AO353_26330 at 5782.376 kb on + strand, within AO353_26330 at 5782.376 kb on + strand, within AO353_26330 at 5782.376 kb on + strand, within AO353_26330 at 5782.376 kb on + strand, within AO353_26330 at 5782.376 kb on + strand, within AO353_26330 at 5782.376 kb on + strand, within AO353_26330 at 5782.376 kb on + strand, within AO353_26330 at 5782.376 kb on + strand, within AO353_26330 at 5782.377 kb on - strand, within AO353_26330 at 5782.377 kb on - strand, within AO353_26330 at 5782.377 kb on - strand, within AO353_26330 at 5782.377 kb on - strand, within AO353_26330 at 5782.377 kb on - strand, within AO353_26330 at 5782.377 kb on - strand, within AO353_26330 at 5782.408 kb on + strand, within AO353_26330 at 5782.493 kb on - strand at 5782.549 kb on + strand at 5782.549 kb on + strand at 5782.549 kb on + strand at 5782.550 kb on - strand at 5782.550 kb on - strand at 5782.563 kb on + strand at 5782.564 kb on - strand at 5782.564 kb on - strand at 5782.683 kb on + strand at 5782.683 kb on + strand at 5782.683 kb on + strand at 5782.712 kb on + strand at 5782.712 kb on + strand at 5782.712 kb on + strand at 5782.799 kb on + strand, within AO353_26335 at 5782.799 kb on + strand, within AO353_26335 at 5782.799 kb on + strand, within AO353_26335 at 5782.799 kb on + strand, within AO353_26335 at 5782.799 kb on + strand, within AO353_26335 at 5782.799 kb on + strand, within AO353_26335 at 5782.803 kb on + strand, within AO353_26335 at 5782.830 kb on + strand, within AO353_26335 at 5782.830 kb on + strand, within AO353_26335 at 5782.848 kb on + strand, within AO353_26335 at 5782.848 kb on + strand, within AO353_26335 at 5783.794 kb on + strand at 5783.795 kb on - strand at 5783.795 kb on - strand at 5783.878 kb on + strand, within AO353_26345 at 5783.879 kb on - strand, within AO353_26345 at 5783.879 kb on - strand, within AO353_26345
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 5,781,734 + -2.0 5,781,734 + +0.3 5,781,734 + +0.0 5,781,735 - -0.5 5,781,735 - +0.0 5,781,735 - -1.2 5,781,735 - -0.7 5,781,735 - -1.0 5,781,735 - -1.7 5,781,735 - -1.0 5,781,735 - -1.1 5,781,735 - -0.9 5,781,735 - +0.9 5,781,789 + +0.6 5,781,789 + +1.0 5,781,790 - -0.7 5,781,844 - AO353_26330 0.13 +0.5 5,781,922 - AO353_26330 0.22 +1.1 5,781,922 - AO353_26330 0.22 -1.0 5,782,199 + AO353_26330 0.57 -0.6 5,782,199 + AO353_26330 0.57 -0.6 5,782,273 + AO353_26330 0.66 -0.1 5,782,276 - AO353_26330 0.66 +0.8 5,782,317 + AO353_26330 0.71 +0.4 5,782,317 + +1.1 5,782,317 + AO353_26330 0.71 -0.8 5,782,318 - AO353_26330 0.71 +0.5 5,782,318 - AO353_26330 0.71 -3.0 5,782,318 - AO353_26330 0.71 +0.4 5,782,318 - AO353_26330 0.71 +0.6 5,782,318 - AO353_26330 0.71 +1.1 5,782,318 - AO353_26330 0.71 -1.7 5,782,318 - AO353_26330 0.71 -1.7 5,782,350 + AO353_26330 0.75 -0.6 5,782,351 - AO353_26330 0.75 +0.5 5,782,351 - AO353_26330 0.75 -0.2 5,782,351 - AO353_26330 0.75 -0.6 5,782,370 + AO353_26330 0.78 +0.4 5,782,370 + AO353_26330 0.78 -0.5 5,782,371 - AO353_26330 0.78 -0.2 5,782,376 + AO353_26330 0.78 +0.4 5,782,376 + AO353_26330 0.78 -1.0 5,782,376 + AO353_26330 0.78 -0.0 5,782,376 + AO353_26330 0.78 +0.9 5,782,376 + AO353_26330 0.78 -0.9 5,782,376 + AO353_26330 0.78 +0.3 5,782,376 + AO353_26330 0.78 -2.2 5,782,376 + AO353_26330 0.78 +0.4 5,782,377 - AO353_26330 0.79 +0.9 5,782,377 - AO353_26330 0.79 -0.2 5,782,377 - AO353_26330 0.79 -1.2 5,782,377 - AO353_26330 0.79 -0.3 5,782,377 - AO353_26330 0.79 -0.1 5,782,377 - AO353_26330 0.79 +1.4 5,782,408 + AO353_26330 0.82 -1.2 5,782,493 - -0.0 5,782,549 + -0.9 5,782,549 + -0.6 5,782,549 + +0.0 5,782,550 - -1.0 5,782,550 - -0.1 5,782,563 + +2.0 5,782,564 - -0.9 5,782,564 - +0.2 5,782,683 + +0.9 5,782,683 + +0.3 5,782,683 + +0.3 5,782,712 + -3.2 5,782,712 + +0.1 5,782,712 + -1.8 5,782,799 + AO353_26335 0.43 -1.3 5,782,799 + AO353_26335 0.43 -2.3 5,782,799 + AO353_26335 0.43 -2.3 5,782,799 + AO353_26335 0.43 -0.4 5,782,799 + AO353_26335 0.43 +2.9 5,782,799 + AO353_26335 0.43 -3.5 5,782,803 + AO353_26335 0.44 -1.6 5,782,830 + AO353_26335 0.57 -1.5 5,782,830 + AO353_26335 0.57 -0.2 5,782,848 + AO353_26335 0.66 -1.7 5,782,848 + AO353_26335 0.66 -0.4 5,783,794 + -0.5 5,783,795 - +0.5 5,783,795 - -1.0 5,783,878 + AO353_26345 0.13 -0.1 5,783,879 - AO353_26345 0.14 -1.5 5,783,879 - AO353_26345 0.14 -0.3
Or see this region's nucleotide sequence