Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24630 and AO353_24635 are separated by 585 nucleotides AO353_24635 and AO353_24640 are separated by 521 nucleotides AO353_24640 and AO353_24645 are separated by 1 nucleotides
AO353_24630: AO353_24630 - hypothetical protein, at 5,420,066 to 5,420,500
_24630
AO353_24635: AO353_24635 - hypothetical protein, at 5,421,086 to 5,421,400
_24635
AO353_24640: AO353_24640 - hypothetical protein, at 5,421,922 to 5,422,335
_24640
AO353_24645: AO353_24645 - hypothetical protein, at 5,422,337 to 5,424,217
_24645
Position (kb) 5421
5422 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5420.100 kb on - strand at 5420.137 kb on - strand, within AO353_24630 at 5420.186 kb on + strand, within AO353_24630 at 5420.187 kb on - strand, within AO353_24630 at 5420.213 kb on + strand, within AO353_24630 at 5420.271 kb on + strand, within AO353_24630 at 5420.271 kb on + strand, within AO353_24630 at 5420.272 kb on - strand, within AO353_24630 at 5420.272 kb on - strand, within AO353_24630 at 5420.272 kb on - strand, within AO353_24630 at 5420.272 kb on - strand, within AO353_24630 at 5420.325 kb on + strand, within AO353_24630 at 5420.326 kb on - strand, within AO353_24630 at 5420.326 kb on - strand, within AO353_24630 at 5420.331 kb on + strand, within AO353_24630 at 5420.331 kb on + strand, within AO353_24630 at 5420.332 kb on - strand, within AO353_24630 at 5420.332 kb on - strand, within AO353_24630 at 5420.363 kb on + strand, within AO353_24630 at 5420.363 kb on + strand, within AO353_24630 at 5420.363 kb on + strand, within AO353_24630 at 5420.363 kb on + strand, within AO353_24630 at 5420.363 kb on + strand, within AO353_24630 at 5420.363 kb on + strand, within AO353_24630 at 5420.363 kb on + strand, within AO353_24630 at 5420.363 kb on + strand, within AO353_24630 at 5420.363 kb on + strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.364 kb on - strand, within AO353_24630 at 5420.366 kb on + strand, within AO353_24630 at 5420.407 kb on + strand, within AO353_24630 at 5420.407 kb on + strand, within AO353_24630 at 5420.407 kb on + strand, within AO353_24630 at 5420.407 kb on + strand, within AO353_24630 at 5420.407 kb on + strand, within AO353_24630 at 5420.407 kb on + strand, within AO353_24630 at 5420.407 kb on + strand, within AO353_24630 at 5420.407 kb on + strand, within AO353_24630 at 5420.408 kb on - strand, within AO353_24630 at 5420.408 kb on - strand, within AO353_24630 at 5420.433 kb on - strand, within AO353_24630 at 5420.433 kb on - strand, within AO353_24630 at 5420.433 kb on - strand, within AO353_24630 at 5420.436 kb on + strand, within AO353_24630 at 5420.436 kb on + strand, within AO353_24630 at 5420.436 kb on + strand, within AO353_24630 at 5420.437 kb on - strand, within AO353_24630 at 5420.459 kb on + strand at 5420.459 kb on + strand at 5420.459 kb on + strand at 5420.459 kb on + strand at 5420.460 kb on - strand at 5420.460 kb on - strand at 5420.460 kb on - strand at 5420.460 kb on - strand at 5420.480 kb on - strand at 5420.522 kb on + strand at 5420.522 kb on + strand at 5420.548 kb on + strand at 5420.548 kb on + strand at 5420.548 kb on + strand at 5420.548 kb on + strand at 5420.549 kb on - strand at 5420.549 kb on - strand at 5420.549 kb on - strand at 5420.549 kb on - strand at 5420.549 kb on - strand at 5420.579 kb on + strand at 5420.580 kb on - strand at 5420.580 kb on - strand at 5420.613 kb on + strand at 5420.613 kb on + strand at 5420.614 kb on - strand at 5420.614 kb on - strand at 5420.633 kb on + strand at 5420.634 kb on - strand at 5420.634 kb on - strand at 5420.634 kb on - strand at 5420.698 kb on + strand at 5420.741 kb on + strand at 5420.741 kb on + strand at 5420.755 kb on - strand at 5420.789 kb on - strand at 5420.817 kb on + strand at 5420.817 kb on + strand at 5420.817 kb on + strand at 5420.817 kb on + strand at 5420.817 kb on + strand at 5420.818 kb on - strand at 5420.818 kb on - strand at 5420.818 kb on - strand at 5420.826 kb on + strand at 5420.826 kb on + strand at 5420.827 kb on - strand at 5420.840 kb on + strand at 5420.840 kb on + strand at 5420.840 kb on + strand at 5420.840 kb on + strand at 5420.840 kb on + strand at 5420.841 kb on - strand at 5420.841 kb on - strand at 5420.841 kb on - strand at 5420.851 kb on + strand at 5420.851 kb on + strand at 5420.852 kb on - strand at 5420.855 kb on - strand at 5420.855 kb on - strand at 5420.855 kb on - strand at 5420.875 kb on - strand at 5420.919 kb on + strand at 5420.974 kb on + strand at 5420.974 kb on + strand at 5420.974 kb on + strand at 5420.975 kb on - strand at 5420.975 kb on - strand at 5421.019 kb on + strand at 5421.019 kb on + strand at 5421.019 kb on + strand at 5421.019 kb on + strand at 5421.019 kb on + strand at 5421.019 kb on + strand at 5421.020 kb on - strand at 5421.020 kb on - strand at 5421.213 kb on + strand, within AO353_24635 at 5421.213 kb on + strand, within AO353_24635 at 5421.214 kb on - strand, within AO353_24635 at 5421.214 kb on - strand, within AO353_24635 at 5421.214 kb on - strand, within AO353_24635 at 5421.214 kb on - strand, within AO353_24635 at 5421.319 kb on + strand, within AO353_24635 at 5421.321 kb on + strand at 5421.321 kb on + strand, within AO353_24635 at 5421.321 kb on + strand, within AO353_24635 at 5421.321 kb on + strand, within AO353_24635 at 5421.321 kb on + strand, within AO353_24635 at 5421.321 kb on + strand, within AO353_24635 at 5421.322 kb on - strand, within AO353_24635 at 5421.322 kb on - strand, within AO353_24635 at 5421.348 kb on + strand, within AO353_24635 at 5421.348 kb on + strand, within AO353_24635 at 5421.348 kb on + strand, within AO353_24635 at 5421.349 kb on - strand, within AO353_24635 at 5421.349 kb on - strand, within AO353_24635 at 5421.411 kb on - strand at 5421.472 kb on - strand at 5421.477 kb on + strand at 5421.478 kb on - strand at 5421.478 kb on - strand at 5421.480 kb on + strand at 5421.480 kb on + strand at 5421.584 kb on + strand at 5421.584 kb on + strand at 5421.585 kb on - strand at 5421.587 kb on + strand at 5421.587 kb on + strand at 5421.587 kb on + strand at 5421.587 kb on + strand at 5421.587 kb on + strand at 5421.587 kb on + strand at 5421.588 kb on - strand at 5421.588 kb on - strand at 5421.617 kb on + strand at 5421.618 kb on - strand at 5421.678 kb on - strand at 5421.678 kb on - strand at 5421.678 kb on - strand at 5421.725 kb on + strand at 5421.726 kb on - strand at 5421.726 kb on - strand at 5421.726 kb on - strand at 5421.776 kb on + strand at 5421.776 kb on + strand at 5421.776 kb on + strand at 5421.777 kb on - strand at 5421.777 kb on - strand at 5421.799 kb on + strand at 5421.799 kb on + strand at 5421.799 kb on + strand at 5421.800 kb on - strand at 5421.828 kb on + strand at 5421.828 kb on + strand at 5421.828 kb on + strand at 5421.828 kb on + strand at 5421.828 kb on + strand at 5421.828 kb on + strand at 5421.829 kb on - strand at 5421.829 kb on - strand at 5421.829 kb on - strand at 5421.832 kb on + strand at 5421.832 kb on + strand at 5421.832 kb on + strand at 5421.833 kb on - strand at 5421.833 kb on - strand at 5421.899 kb on + strand at 5421.899 kb on + strand at 5421.982 kb on + strand, within AO353_24640 at 5421.982 kb on + strand, within AO353_24640 at 5421.982 kb on + strand, within AO353_24640 at 5421.983 kb on - strand, within AO353_24640 at 5421.983 kb on - strand, within AO353_24640 at 5421.983 kb on - strand, within AO353_24640 at 5421.983 kb on - strand, within AO353_24640 at 5421.993 kb on + strand, within AO353_24640 at 5422.163 kb on + strand, within AO353_24640 at 5422.163 kb on + strand, within AO353_24640 at 5422.163 kb on + strand, within AO353_24640 at 5422.163 kb on + strand, within AO353_24640 at 5422.163 kb on + strand, within AO353_24640 at 5422.163 kb on + strand, within AO353_24640 at 5422.163 kb on + strand, within AO353_24640 at 5422.164 kb on - strand, within AO353_24640 at 5422.164 kb on - strand, within AO353_24640 at 5422.164 kb on - strand, within AO353_24640 at 5422.164 kb on - strand, within AO353_24640 at 5422.386 kb on + strand at 5422.386 kb on + strand at 5422.386 kb on + strand at 5422.386 kb on + strand at 5422.386 kb on + strand at 5422.386 kb on + strand at 5422.387 kb on - strand at 5422.387 kb on - strand at 5422.387 kb on - strand at 5422.387 kb on - strand at 5422.387 kb on - strand at 5422.387 kb on - strand at 5422.387 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 5,420,100 - -0.8 5,420,137 - AO353_24630 0.16 +0.6 5,420,186 + AO353_24630 0.28 -0.8 5,420,187 - AO353_24630 0.28 +0.3 5,420,213 + AO353_24630 0.34 +1.0 5,420,271 + AO353_24630 0.47 -0.4 5,420,271 + AO353_24630 0.47 +1.6 5,420,272 - AO353_24630 0.47 -1.2 5,420,272 - AO353_24630 0.47 +0.5 5,420,272 - AO353_24630 0.47 +0.4 5,420,272 - AO353_24630 0.47 -1.0 5,420,325 + AO353_24630 0.60 -0.3 5,420,326 - AO353_24630 0.60 +1.6 5,420,326 - AO353_24630 0.60 +0.9 5,420,331 + AO353_24630 0.61 +0.5 5,420,331 + AO353_24630 0.61 -1.1 5,420,332 - AO353_24630 0.61 +0.6 5,420,332 - AO353_24630 0.61 +0.7 5,420,363 + AO353_24630 0.68 -1.3 5,420,363 + AO353_24630 0.68 +0.8 5,420,363 + AO353_24630 0.68 +0.6 5,420,363 + AO353_24630 0.68 -0.7 5,420,363 + AO353_24630 0.68 +1.0 5,420,363 + AO353_24630 0.68 -0.7 5,420,363 + AO353_24630 0.68 -0.8 5,420,363 + AO353_24630 0.68 -0.8 5,420,363 + AO353_24630 0.68 +1.2 5,420,364 - AO353_24630 0.69 +0.9 5,420,364 - AO353_24630 0.69 +0.5 5,420,364 - AO353_24630 0.69 -1.0 5,420,364 - AO353_24630 0.69 +0.6 5,420,364 - AO353_24630 0.69 -1.3 5,420,364 - AO353_24630 0.69 -0.8 5,420,364 - AO353_24630 0.69 -1.0 5,420,364 - AO353_24630 0.69 +0.4 5,420,364 - AO353_24630 0.69 -0.8 5,420,364 - AO353_24630 0.69 +0.2 5,420,364 - AO353_24630 0.69 +0.6 5,420,366 + AO353_24630 0.69 -0.8 5,420,407 + AO353_24630 0.78 +0.9 5,420,407 + AO353_24630 0.78 -1.0 5,420,407 + AO353_24630 0.78 +0.0 5,420,407 + AO353_24630 0.78 -1.1 5,420,407 + AO353_24630 0.78 -1.7 5,420,407 + AO353_24630 0.78 +0.5 5,420,407 + AO353_24630 0.78 -0.3 5,420,407 + AO353_24630 0.78 +0.7 5,420,408 - AO353_24630 0.79 -0.5 5,420,408 - AO353_24630 0.79 +0.6 5,420,433 - AO353_24630 0.84 -0.2 5,420,433 - AO353_24630 0.84 -1.0 5,420,433 - AO353_24630 0.84 +0.0 5,420,436 + AO353_24630 0.85 +1.0 5,420,436 + AO353_24630 0.85 -2.1 5,420,436 + AO353_24630 0.85 -0.5 5,420,437 - AO353_24630 0.85 +0.0 5,420,459 + +0.6 5,420,459 + -1.0 5,420,459 + -1.5 5,420,459 + -1.3 5,420,460 - -0.2 5,420,460 - -2.0 5,420,460 - -0.3 5,420,460 - -1.5 5,420,480 - +0.5 5,420,522 + -0.5 5,420,522 + -0.7 5,420,548 + -1.3 5,420,548 + -0.4 5,420,548 + -1.3 5,420,548 + +1.0 5,420,549 - -1.1 5,420,549 - -0.4 5,420,549 - -0.2 5,420,549 - +0.0 5,420,549 - +2.3 5,420,579 + +1.0 5,420,580 - -1.5 5,420,580 - -0.3 5,420,613 + -2.0 5,420,613 + -0.3 5,420,614 - +0.2 5,420,614 - -0.8 5,420,633 + +0.6 5,420,634 - -2.4 5,420,634 - +1.3 5,420,634 - -0.2 5,420,698 + +0.2 5,420,741 + -1.7 5,420,741 + +0.2 5,420,755 - -2.4 5,420,789 - -0.5 5,420,817 + +0.7 5,420,817 + -1.4 5,420,817 + -1.2 5,420,817 + +0.6 5,420,817 + -0.3 5,420,818 - +0.3 5,420,818 - -1.0 5,420,818 - -1.1 5,420,826 + -0.5 5,420,826 + -0.2 5,420,827 - +0.3 5,420,840 + -0.4 5,420,840 + +0.3 5,420,840 + +0.2 5,420,840 + -0.9 5,420,840 + +0.7 5,420,841 - -1.0 5,420,841 - -0.7 5,420,841 - +0.6 5,420,851 + -0.4 5,420,851 + -0.7 5,420,852 - -0.1 5,420,855 - -0.5 5,420,855 - +0.3 5,420,855 - -0.2 5,420,875 - -2.0 5,420,919 + -0.5 5,420,974 + -1.1 5,420,974 + -0.5 5,420,974 + +0.0 5,420,975 - +0.6 5,420,975 - +0.2 5,421,019 + -0.1 5,421,019 + -0.5 5,421,019 + +0.2 5,421,019 + -0.1 5,421,019 + -1.0 5,421,019 + +1.0 5,421,020 - -1.8 5,421,020 - +0.7 5,421,213 + AO353_24635 0.40 -0.7 5,421,213 + AO353_24635 0.40 -1.3 5,421,214 - AO353_24635 0.41 -0.6 5,421,214 - AO353_24635 0.41 +0.0 5,421,214 - AO353_24635 0.41 -0.4 5,421,214 - AO353_24635 0.41 -1.4 5,421,319 + AO353_24635 0.74 -1.1 5,421,321 + +0.0 5,421,321 + AO353_24635 0.75 -1.7 5,421,321 + AO353_24635 0.75 -0.5 5,421,321 + AO353_24635 0.75 +0.7 5,421,321 + AO353_24635 0.75 -0.3 5,421,321 + AO353_24635 0.75 -0.8 5,421,322 - AO353_24635 0.75 +1.0 5,421,322 - AO353_24635 0.75 +0.5 5,421,348 + AO353_24635 0.83 -0.8 5,421,348 + AO353_24635 0.83 -2.8 5,421,348 + AO353_24635 0.83 +1.8 5,421,349 - AO353_24635 0.83 +0.0 5,421,349 - AO353_24635 0.83 +2.0 5,421,411 - -0.4 5,421,472 - +0.6 5,421,477 + +0.6 5,421,478 - -0.7 5,421,478 - +0.2 5,421,480 + +0.7 5,421,480 + -0.5 5,421,584 + -0.3 5,421,584 + +0.0 5,421,585 - -0.6 5,421,587 + +1.0 5,421,587 + +0.0 5,421,587 + -0.3 5,421,587 + +0.3 5,421,587 + +0.4 5,421,587 + +1.5 5,421,588 - -1.3 5,421,588 - -0.5 5,421,617 + -0.3 5,421,618 - -2.3 5,421,678 - +0.5 5,421,678 - +0.0 5,421,678 - -0.5 5,421,725 + -2.3 5,421,726 - -0.5 5,421,726 - -0.5 5,421,726 - -1.3 5,421,776 + -0.5 5,421,776 + +0.2 5,421,776 + -0.5 5,421,777 - -1.3 5,421,777 - -0.7 5,421,799 + -1.5 5,421,799 + -2.9 5,421,799 + -0.9 5,421,800 - -0.7 5,421,828 + +0.5 5,421,828 + +0.5 5,421,828 + -0.1 5,421,828 + -0.9 5,421,828 + -1.7 5,421,828 + +0.1 5,421,829 - -0.8 5,421,829 - +0.3 5,421,829 - -0.6 5,421,832 + -1.2 5,421,832 + -0.2 5,421,832 + -1.3 5,421,833 - +0.2 5,421,833 - -1.4 5,421,899 + -0.5 5,421,899 + +1.1 5,421,982 + AO353_24640 0.14 -2.2 5,421,982 + AO353_24640 0.14 +1.8 5,421,982 + AO353_24640 0.14 -0.5 5,421,983 - AO353_24640 0.15 -0.3 5,421,983 - AO353_24640 0.15 -1.9 5,421,983 - AO353_24640 0.15 +0.1 5,421,983 - AO353_24640 0.15 -0.4 5,421,993 + AO353_24640 0.17 +0.2 5,422,163 + AO353_24640 0.58 -0.0 5,422,163 + AO353_24640 0.58 -0.4 5,422,163 + AO353_24640 0.58 -1.5 5,422,163 + AO353_24640 0.58 -0.6 5,422,163 + AO353_24640 0.58 -0.7 5,422,163 + AO353_24640 0.58 -0.5 5,422,163 + AO353_24640 0.58 -0.3 5,422,164 - AO353_24640 0.58 -0.4 5,422,164 - AO353_24640 0.58 +1.1 5,422,164 - AO353_24640 0.58 +1.1 5,422,164 - AO353_24640 0.58 -0.3 5,422,386 + -0.8 5,422,386 + +0.3 5,422,386 + -0.5 5,422,386 + -1.4 5,422,386 + -0.1 5,422,386 + -0.8 5,422,387 - +0.5 5,422,387 - +0.9 5,422,387 - -0.5 5,422,387 - +0.2 5,422,387 - -0.2 5,422,387 - -0.8 5,422,387 - +0.5
Or see this region's nucleotide sequence