Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23860

Experiment: Tetracycline 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23850 and AO353_23855 are separated by 22 nucleotidesAO353_23855 and AO353_23860 are separated by 58 nucleotidesAO353_23860 and AO353_23865 are separated by 336 nucleotides AO353_23850: AO353_23850 - nitrilase, at 5,234,595 to 5,235,515 _23850 AO353_23855: AO353_23855 - hypothetical protein, at 5,235,538 to 5,236,011 _23855 AO353_23860: AO353_23860 - xanthine permease XanP, at 5,236,070 to 5,237,542 _23860 AO353_23865: AO353_23865 - hypothetical protein, at 5,237,879 to 5,238,253 _23865 Position (kb) 5236 5237 5238Strain fitness (log2 ratio) -2 -1 0 1 2at 5235.126 kb on + strand, within AO353_23850at 5235.126 kb on + strand, within AO353_23850at 5235.127 kb on - strand, within AO353_23850at 5235.127 kb on - strand, within AO353_23850at 5235.127 kb on - strand, within AO353_23850at 5235.423 kb on + strand, within AO353_23850at 5235.429 kb on + strandat 5235.429 kb on + strandat 5235.429 kb on + strandat 5235.430 kb on - strandat 5235.448 kb on - strandat 5235.448 kb on - strandat 5235.448 kb on - strandat 5235.509 kb on + strandat 5235.510 kb on - strandat 5235.510 kb on - strandat 5235.631 kb on + strand, within AO353_23855at 5235.631 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.639 kb on - strand, within AO353_23855at 5235.639 kb on - strand, within AO353_23855at 5235.639 kb on - strand, within AO353_23855at 5235.639 kb on - strand, within AO353_23855at 5235.708 kb on + strand, within AO353_23855at 5235.709 kb on - strand, within AO353_23855at 5235.824 kb on + strand, within AO353_23855at 5235.828 kb on + strand, within AO353_23855at 5235.829 kb on - strand, within AO353_23855at 5235.829 kb on - strand, within AO353_23855at 5235.924 kb on + strand, within AO353_23855at 5235.925 kb on - strand, within AO353_23855at 5235.991 kb on + strandat 5236.213 kb on + strandat 5236.214 kb on - strandat 5236.319 kb on + strand, within AO353_23860at 5236.319 kb on + strand, within AO353_23860at 5236.319 kb on + strand, within AO353_23860at 5236.320 kb on - strand, within AO353_23860at 5236.665 kb on + strand, within AO353_23860at 5236.666 kb on - strand, within AO353_23860at 5236.794 kb on + strand, within AO353_23860at 5236.878 kb on + strand, within AO353_23860at 5236.879 kb on - strand, within AO353_23860at 5236.925 kb on + strand, within AO353_23860at 5236.926 kb on - strand, within AO353_23860at 5236.926 kb on - strand, within AO353_23860at 5236.926 kb on - strand, within AO353_23860at 5237.436 kb on - strandat 5237.436 kb on - strandat 5237.436 kb on - strandat 5237.625 kb on + strandat 5237.754 kb on + strandat 5237.880 kb on + strandat 5238.056 kb on + strand, within AO353_23865at 5238.057 kb on - strand, within AO353_23865at 5238.148 kb on - strand, within AO353_23865at 5238.148 kb on - strand, within AO353_23865at 5238.266 kb on + strandat 5238.266 kb on + strandat 5238.266 kb on + strandat 5238.270 kb on + strandat 5238.270 kb on + strandat 5238.270 kb on + strandat 5238.270 kb on + strandat 5238.271 kb on - strandat 5238.271 kb on - strandat 5238.271 kb on - strandat 5238.271 kb on - strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.289 kb on + strandat 5238.290 kb on - strandat 5238.290 kb on - strandat 5238.290 kb on - strandat 5238.290 kb on - strandat 5238.290 kb on - strandat 5238.290 kb on - strandat 5238.290 kb on - strandat 5238.290 kb on - strandat 5238.332 kb on - strandat 5238.471 kb on + strandat 5238.534 kb on + strandat 5238.534 kb on + strandat 5238.540 kb on + strandat 5238.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
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5,235,126 + AO353_23850 0.58 +0.3
5,235,126 + AO353_23850 0.58 +0.2
5,235,127 - AO353_23850 0.58 +0.1
5,235,127 - AO353_23850 0.58 -1.4
5,235,127 - AO353_23850 0.58 +1.1
5,235,423 + AO353_23850 0.90 +1.4
5,235,429 + -0.4
5,235,429 + -0.0
5,235,429 + +1.7
5,235,430 - +0.9
5,235,448 - -0.2
5,235,448 - +0.7
5,235,448 - -0.5
5,235,509 + -0.5
5,235,510 - +0.9
5,235,510 - +0.5
5,235,631 + AO353_23855 0.20 +0.3
5,235,631 + AO353_23855 0.20 -0.5
5,235,634 + AO353_23855 0.20 +2.1
5,235,634 + AO353_23855 0.20 -2.5
5,235,634 + AO353_23855 0.20 -1.5
5,235,634 + AO353_23855 0.20 -1.2
5,235,634 + AO353_23855 0.20 -1.4
5,235,634 + AO353_23855 0.20 -0.1
5,235,635 - AO353_23855 0.20 -0.4
5,235,635 - AO353_23855 0.20 -1.5
5,235,635 - AO353_23855 0.20 +0.9
5,235,635 - AO353_23855 0.20 -0.2
5,235,635 - AO353_23855 0.20 +1.0
5,235,638 + AO353_23855 0.21 +1.3
5,235,638 + AO353_23855 0.21 +0.4
5,235,638 + AO353_23855 0.21 +0.1
5,235,638 + AO353_23855 0.21 -0.5
5,235,638 + AO353_23855 0.21 +1.1
5,235,638 + AO353_23855 0.21 -0.6
5,235,638 + AO353_23855 0.21 -1.2
5,235,638 + AO353_23855 0.21 +0.1
5,235,638 + AO353_23855 0.21 -0.6
5,235,638 + AO353_23855 0.21 -0.2
5,235,639 - AO353_23855 0.21 -0.3
5,235,639 - AO353_23855 0.21 +0.7
5,235,639 - AO353_23855 0.21 -0.1
5,235,639 - AO353_23855 0.21 +0.6
5,235,708 + AO353_23855 0.36 -0.0
5,235,709 - AO353_23855 0.36 +0.3
5,235,824 + AO353_23855 0.60 -0.4
5,235,828 + AO353_23855 0.61 +0.3
5,235,829 - AO353_23855 0.61 +0.1
5,235,829 - AO353_23855 0.61 -0.8
5,235,924 + AO353_23855 0.81 +0.9
5,235,925 - AO353_23855 0.82 +2.6
5,235,991 + +0.2
5,236,213 + -0.1
5,236,214 - +1.1
5,236,319 + AO353_23860 0.17 +0.5
5,236,319 + AO353_23860 0.17 +0.1
5,236,319 + AO353_23860 0.17 +0.1
5,236,320 - AO353_23860 0.17 -1.8
5,236,665 + AO353_23860 0.40 -0.2
5,236,666 - AO353_23860 0.40 -1.2
5,236,794 + AO353_23860 0.49 -0.9
5,236,878 + AO353_23860 0.55 -0.8
5,236,879 - AO353_23860 0.55 -1.7
5,236,925 + AO353_23860 0.58 -0.2
5,236,926 - AO353_23860 0.58 +2.1
5,236,926 - AO353_23860 0.58 -1.3
5,236,926 - AO353_23860 0.58 -0.9
5,237,436 - -0.9
5,237,436 - -0.3
5,237,436 - -1.2
5,237,625 + -1.7
5,237,754 + -0.9
5,237,880 + +1.1
5,238,056 + AO353_23865 0.47 +1.3
5,238,057 - AO353_23865 0.47 -0.1
5,238,148 - AO353_23865 0.72 -0.1
5,238,148 - AO353_23865 0.72 +0.8
5,238,266 + -1.2
5,238,266 + -0.7
5,238,266 + +0.1
5,238,270 + +1.3
5,238,270 + -1.2
5,238,270 + +0.1
5,238,270 + +1.1
5,238,271 - +0.8
5,238,271 - +0.4
5,238,271 - +0.1
5,238,271 - -2.0
5,238,289 + -1.2
5,238,289 + -0.1
5,238,289 + -0.5
5,238,289 + -0.5
5,238,289 + +0.2
5,238,289 + +0.5
5,238,289 + +0.3
5,238,289 + +0.1
5,238,289 + +0.4
5,238,289 + -0.3
5,238,289 + +1.1
5,238,290 - +0.1
5,238,290 - +0.8
5,238,290 - +0.7
5,238,290 - +0.5
5,238,290 - -0.9
5,238,290 - -0.9
5,238,290 - +0.2
5,238,290 - -0.1
5,238,332 - -0.7
5,238,471 + +0.1
5,238,534 + -0.9
5,238,534 + +0.4
5,238,540 + -0.4
5,238,540 + +0.1

Or see this region's nucleotide sequence