Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23390 and AO353_23395 are separated by 19 nucleotides AO353_23395 and AO353_23400 are separated by 143 nucleotides AO353_23400 and AO353_23405 are separated by 194 nucleotides AO353_23405 and AO353_23410 are separated by 69 nucleotides
AO353_23390: AO353_23390 - transcriptional regulator, at 5,127,180 to 5,127,845
_23390
AO353_23395: AO353_23395 - hypothetical protein, at 5,127,865 to 5,128,494
_23395
AO353_23400: AO353_23400 - hypothetical protein, at 5,128,638 to 5,128,967
_23400
AO353_23405: AO353_23405 - hypothetical protein, at 5,129,162 to 5,129,362
_23405
AO353_23410: AO353_23410 - hypothetical protein, at 5,129,432 to 5,129,716
_23410
Position (kb) 5128
5129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5127.644 kb on - strand, within AO353_23390 at 5127.780 kb on - strand at 5127.925 kb on + strand at 5127.925 kb on + strand at 5127.925 kb on + strand at 5127.926 kb on - strand at 5127.926 kb on - strand at 5127.926 kb on - strand at 5127.928 kb on - strand, within AO353_23395 at 5127.928 kb on - strand, within AO353_23395 at 5127.969 kb on - strand, within AO353_23395 at 5128.163 kb on + strand, within AO353_23395 at 5128.164 kb on - strand at 5128.229 kb on + strand, within AO353_23395 at 5128.230 kb on - strand, within AO353_23395 at 5128.271 kb on - strand, within AO353_23395 at 5128.331 kb on + strand, within AO353_23395 at 5128.331 kb on + strand, within AO353_23395 at 5128.332 kb on - strand, within AO353_23395 at 5128.350 kb on + strand, within AO353_23395 at 5128.350 kb on + strand, within AO353_23395 at 5128.351 kb on - strand, within AO353_23395 at 5128.351 kb on - strand, within AO353_23395 at 5128.489 kb on - strand at 5128.530 kb on - strand at 5128.543 kb on + strand at 5128.543 kb on + strand at 5128.550 kb on - strand at 5128.834 kb on + strand, within AO353_23400 at 5128.834 kb on + strand, within AO353_23400 at 5128.834 kb on + strand, within AO353_23400 at 5128.834 kb on + strand, within AO353_23400 at 5128.834 kb on + strand, within AO353_23400 at 5128.883 kb on - strand, within AO353_23400 at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.959 kb on + strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5128.960 kb on - strand at 5129.003 kb on - strand at 5129.036 kb on + strand at 5129.081 kb on + strand at 5129.081 kb on + strand at 5129.082 kb on - strand at 5129.092 kb on + strand at 5129.093 kb on - strand at 5129.105 kb on + strand at 5129.105 kb on + strand at 5129.106 kb on - strand at 5129.106 kb on - strand at 5129.278 kb on + strand, within AO353_23405 at 5129.333 kb on + strand, within AO353_23405 at 5129.334 kb on - strand, within AO353_23405 at 5129.334 kb on - strand, within AO353_23405 at 5129.334 kb on - strand, within AO353_23405 at 5129.334 kb on - strand, within AO353_23405 at 5129.384 kb on + strand at 5129.433 kb on + strand at 5129.433 kb on + strand at 5129.439 kb on + strand at 5129.440 kb on - strand at 5129.440 kb on - strand at 5129.549 kb on - strand, within AO353_23410 at 5129.650 kb on + strand, within AO353_23410 at 5129.650 kb on + strand, within AO353_23410 at 5129.651 kb on - strand, within AO353_23410 at 5129.701 kb on + strand at 5129.701 kb on + strand at 5129.701 kb on + strand at 5129.701 kb on + strand at 5129.701 kb on + strand at 5129.701 kb on + strand at 5129.701 kb on + strand at 5129.702 kb on - strand at 5129.702 kb on - strand at 5129.702 kb on - strand at 5129.849 kb on + strand at 5129.849 kb on + strand at 5129.852 kb on + strand at 5129.852 kb on + strand at 5129.852 kb on + strand at 5129.852 kb on + strand at 5129.852 kb on + strand at 5129.853 kb on - strand at 5129.853 kb on - strand at 5129.853 kb on - strand at 5129.853 kb on - strand at 5129.853 kb on - strand at 5129.853 kb on - strand at 5129.925 kb on + strand at 5129.925 kb on + strand at 5129.925 kb on + strand at 5129.925 kb on + strand at 5129.925 kb on + strand at 5129.925 kb on + strand at 5129.926 kb on - strand at 5129.933 kb on + strand at 5129.933 kb on + strand at 5129.934 kb on - strand at 5129.934 kb on - strand at 5129.948 kb on - strand at 5129.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 5,127,644 - AO353_23390 0.70 +0.0 5,127,780 - +0.5 5,127,925 + +1.3 5,127,925 + +0.1 5,127,925 + -1.2 5,127,926 - -1.2 5,127,926 - +0.6 5,127,926 - +1.5 5,127,928 - AO353_23395 0.10 +0.2 5,127,928 - AO353_23395 0.10 -0.5 5,127,969 - AO353_23395 0.17 +0.3 5,128,163 + AO353_23395 0.47 +0.8 5,128,164 - -0.5 5,128,229 + AO353_23395 0.58 +0.0 5,128,230 - AO353_23395 0.58 +0.1 5,128,271 - AO353_23395 0.64 -0.9 5,128,331 + AO353_23395 0.74 -0.0 5,128,331 + AO353_23395 0.74 +0.5 5,128,332 - AO353_23395 0.74 -0.8 5,128,350 + AO353_23395 0.77 +0.0 5,128,350 + AO353_23395 0.77 +0.1 5,128,351 - AO353_23395 0.77 +0.2 5,128,351 - AO353_23395 0.77 +0.2 5,128,489 - -0.7 5,128,530 - -0.7 5,128,543 + +0.9 5,128,543 + +0.8 5,128,550 - +0.5 5,128,834 + AO353_23400 0.59 -0.9 5,128,834 + AO353_23400 0.59 +0.1 5,128,834 + AO353_23400 0.59 +0.0 5,128,834 + AO353_23400 0.59 -0.7 5,128,834 + AO353_23400 0.59 -1.2 5,128,883 - AO353_23400 0.74 -1.2 5,128,959 + -1.6 5,128,959 + -2.2 5,128,959 + -0.7 5,128,959 + -0.4 5,128,959 + +0.1 5,128,959 + +1.1 5,128,959 + -0.5 5,128,959 + -0.1 5,128,959 + +0.1 5,128,959 + +1.6 5,128,959 + -1.0 5,128,959 + -0.6 5,128,959 + -1.1 5,128,960 - +0.5 5,128,960 - +0.4 5,128,960 - -1.2 5,128,960 - -1.6 5,128,960 - -1.5 5,128,960 - -0.6 5,128,960 - +0.3 5,128,960 - +0.4 5,128,960 - -0.5 5,128,960 - -1.5 5,128,960 - -0.4 5,128,960 - -0.2 5,128,960 - -2.1 5,128,960 - -1.5 5,129,003 - -0.5 5,129,036 + -0.5 5,129,081 + -0.2 5,129,081 + +0.8 5,129,082 - +0.3 5,129,092 + -1.4 5,129,093 - +1.4 5,129,105 + -0.8 5,129,105 + +0.8 5,129,106 - +1.5 5,129,106 - -0.3 5,129,278 + AO353_23405 0.58 -2.9 5,129,333 + AO353_23405 0.85 +0.2 5,129,334 - AO353_23405 0.86 +0.8 5,129,334 - AO353_23405 0.86 +0.6 5,129,334 - AO353_23405 0.86 +2.6 5,129,334 - AO353_23405 0.86 +0.5 5,129,384 + +1.5 5,129,433 + -0.9 5,129,433 + +0.6 5,129,439 + +0.7 5,129,440 - -0.5 5,129,440 - +1.5 5,129,549 - AO353_23410 0.41 -0.2 5,129,650 + AO353_23410 0.76 +0.4 5,129,650 + AO353_23410 0.76 +0.1 5,129,651 - AO353_23410 0.77 +0.7 5,129,701 + -0.3 5,129,701 + +1.3 5,129,701 + -0.5 5,129,701 + -0.5 5,129,701 + +0.7 5,129,701 + -1.2 5,129,701 + +1.1 5,129,702 - +0.7 5,129,702 - -0.3 5,129,702 - +0.8 5,129,849 + -1.2 5,129,849 + +1.3 5,129,852 + -0.1 5,129,852 + +0.8 5,129,852 + +0.3 5,129,852 + +0.0 5,129,852 + -0.6 5,129,853 - +1.2 5,129,853 - -0.5 5,129,853 - +0.1 5,129,853 - +0.9 5,129,853 - -0.2 5,129,853 - -0.5 5,129,925 + -1.1 5,129,925 + -1.9 5,129,925 + +0.1 5,129,925 + -0.1 5,129,925 + -0.7 5,129,925 + -0.3 5,129,926 - -0.7 5,129,933 + +1.5 5,129,933 + +0.7 5,129,934 - -0.2 5,129,934 - -0.5 5,129,948 - -0.5 5,129,948 - +0.1
Or see this region's nucleotide sequence