Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18500 and AO353_18505 are separated by 7 nucleotides AO353_18505 and AO353_18510 are separated by 108 nucleotides AO353_18510 and AO353_18515 are separated by 1 nucleotides AO353_18515 and AO353_18520 are separated by 87 nucleotides
AO353_18500: AO353_18500 - chemotaxis protein CheY, at 4,073,567 to 4,074,244
_18500
AO353_18505: AO353_18505 - translation initiation factor 2, at 4,074,252 to 4,074,662
_18505
AO353_18510: AO353_18510 - hypothetical protein, at 4,074,771 to 4,075,070
_18510
AO353_18515: AO353_18515 - septation protein A, at 4,075,072 to 4,075,668
_18515
AO353_18520: AO353_18520 - phosphoesterase, at 4,075,756 to 4,076,619
_18520
Position (kb)
4074
4075
4076 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4073.949 kb on + strand, within AO353_18500 at 4073.950 kb on - strand, within AO353_18500 at 4074.227 kb on + strand at 4074.227 kb on + strand at 4074.227 kb on + strand at 4074.227 kb on + strand at 4074.227 kb on + strand at 4074.228 kb on - strand at 4074.228 kb on - strand at 4074.228 kb on - strand at 4074.228 kb on - strand at 4074.228 kb on - strand at 4074.228 kb on - strand at 4074.228 kb on - strand at 4074.230 kb on + strand at 4074.258 kb on + strand at 4074.259 kb on - strand at 4074.259 kb on - strand at 4074.278 kb on + strand at 4074.278 kb on + strand at 4074.278 kb on + strand at 4074.278 kb on + strand at 4074.279 kb on - strand at 4074.279 kb on - strand at 4074.279 kb on - strand at 4074.279 kb on - strand at 4074.279 kb on - strand at 4074.318 kb on + strand, within AO353_18505 at 4074.318 kb on + strand, within AO353_18505 at 4074.718 kb on + strand at 4074.719 kb on - strand at 4074.719 kb on - strand at 4074.814 kb on + strand, within AO353_18510 at 4074.815 kb on - strand, within AO353_18510 at 4074.830 kb on + strand, within AO353_18510 at 4074.832 kb on + strand, within AO353_18510 at 4074.832 kb on + strand, within AO353_18510 at 4074.832 kb on + strand, within AO353_18510 at 4074.833 kb on - strand, within AO353_18510 at 4074.833 kb on - strand, within AO353_18510 at 4074.833 kb on - strand, within AO353_18510 at 4075.049 kb on + strand at 4075.050 kb on - strand at 4075.050 kb on - strand at 4075.092 kb on + strand at 4075.518 kb on - strand, within AO353_18515 at 4075.700 kb on - strand at 4075.700 kb on - strand at 4075.702 kb on + strand at 4075.702 kb on + strand at 4075.702 kb on + strand at 4075.702 kb on + strand at 4075.703 kb on - strand at 4075.703 kb on - strand at 4075.703 kb on - strand at 4075.711 kb on + strand at 4075.711 kb on + strand at 4075.711 kb on + strand at 4075.712 kb on - strand at 4075.712 kb on - strand at 4075.712 kb on - strand at 4075.712 kb on - strand at 4075.712 kb on - strand at 4075.712 kb on - strand at 4075.746 kb on - strand at 4075.779 kb on + strand at 4075.780 kb on - strand at 4075.953 kb on + strand, within AO353_18520 at 4075.953 kb on + strand, within AO353_18520 at 4075.953 kb on + strand, within AO353_18520 at 4075.954 kb on - strand, within AO353_18520 at 4075.954 kb on - strand, within AO353_18520
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 4,073,949 + AO353_18500 0.56 -0.7 4,073,950 - AO353_18500 0.56 +0.9 4,074,227 + +0.7 4,074,227 + +0.1 4,074,227 + -0.3 4,074,227 + -1.1 4,074,227 + +0.5 4,074,228 - +0.2 4,074,228 - -0.4 4,074,228 - +0.0 4,074,228 - -2.5 4,074,228 - +1.3 4,074,228 - +1.1 4,074,228 - -0.1 4,074,230 + -0.8 4,074,258 + -0.1 4,074,259 - +0.2 4,074,259 - +0.5 4,074,278 + -0.8 4,074,278 + -0.2 4,074,278 + +0.1 4,074,278 + +0.5 4,074,279 - +2.1 4,074,279 - +0.1 4,074,279 - -0.8 4,074,279 - +0.2 4,074,279 - -0.6 4,074,318 + AO353_18505 0.16 -0.8 4,074,318 + AO353_18505 0.16 -1.4 4,074,718 + +0.2 4,074,719 - -0.8 4,074,719 - +0.1 4,074,814 + AO353_18510 0.14 -1.6 4,074,815 - AO353_18510 0.15 -0.1 4,074,830 + AO353_18510 0.20 -1.7 4,074,832 + AO353_18510 0.20 -0.8 4,074,832 + AO353_18510 0.20 -0.6 4,074,832 + AO353_18510 0.20 +1.1 4,074,833 - AO353_18510 0.21 -0.8 4,074,833 - AO353_18510 0.21 -0.9 4,074,833 - AO353_18510 0.21 -1.2 4,075,049 + -1.1 4,075,050 - +0.5 4,075,050 - +0.4 4,075,092 + -2.7 4,075,518 - AO353_18515 0.75 +0.1 4,075,700 - -3.1 4,075,700 - -1.6 4,075,702 + -0.9 4,075,702 + -2.1 4,075,702 + -2.4 4,075,702 + -1.8 4,075,703 - +0.9 4,075,703 - -1.2 4,075,703 - +0.1 4,075,711 + -2.0 4,075,711 + -2.1 4,075,711 + -0.9 4,075,712 - -0.7 4,075,712 - +0.7 4,075,712 - -0.5 4,075,712 - -0.5 4,075,712 - -1.9 4,075,712 - -0.8 4,075,746 - -0.1 4,075,779 + -0.1 4,075,780 - -0.5 4,075,953 + AO353_18520 0.23 +1.5 4,075,953 + AO353_18520 0.23 -0.2 4,075,953 + AO353_18520 0.23 +0.2 4,075,954 - AO353_18520 0.23 -2.4 4,075,954 - AO353_18520 0.23 +0.7
Or see this region's nucleotide sequence