Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18510

Experiment: Tetracycline 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18500 and AO353_18505 are separated by 7 nucleotidesAO353_18505 and AO353_18510 are separated by 108 nucleotidesAO353_18510 and AO353_18515 are separated by 1 nucleotidesAO353_18515 and AO353_18520 are separated by 87 nucleotides AO353_18500: AO353_18500 - chemotaxis protein CheY, at 4,073,567 to 4,074,244 _18500 AO353_18505: AO353_18505 - translation initiation factor 2, at 4,074,252 to 4,074,662 _18505 AO353_18510: AO353_18510 - hypothetical protein, at 4,074,771 to 4,075,070 _18510 AO353_18515: AO353_18515 - septation protein A, at 4,075,072 to 4,075,668 _18515 AO353_18520: AO353_18520 - phosphoesterase, at 4,075,756 to 4,076,619 _18520 Position (kb) 4074 4075 4076Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4073.949 kb on + strand, within AO353_18500at 4073.950 kb on - strand, within AO353_18500at 4074.227 kb on + strandat 4074.227 kb on + strandat 4074.227 kb on + strandat 4074.227 kb on + strandat 4074.227 kb on + strandat 4074.228 kb on - strandat 4074.228 kb on - strandat 4074.228 kb on - strandat 4074.228 kb on - strandat 4074.228 kb on - strandat 4074.228 kb on - strandat 4074.228 kb on - strandat 4074.230 kb on + strandat 4074.258 kb on + strandat 4074.259 kb on - strandat 4074.259 kb on - strandat 4074.278 kb on + strandat 4074.278 kb on + strandat 4074.278 kb on + strandat 4074.278 kb on + strandat 4074.279 kb on - strandat 4074.279 kb on - strandat 4074.279 kb on - strandat 4074.279 kb on - strandat 4074.279 kb on - strandat 4074.318 kb on + strand, within AO353_18505at 4074.318 kb on + strand, within AO353_18505at 4074.718 kb on + strandat 4074.719 kb on - strandat 4074.719 kb on - strandat 4074.814 kb on + strand, within AO353_18510at 4074.815 kb on - strand, within AO353_18510at 4074.830 kb on + strand, within AO353_18510at 4074.832 kb on + strand, within AO353_18510at 4074.832 kb on + strand, within AO353_18510at 4074.832 kb on + strand, within AO353_18510at 4074.833 kb on - strand, within AO353_18510at 4074.833 kb on - strand, within AO353_18510at 4074.833 kb on - strand, within AO353_18510at 4075.049 kb on + strandat 4075.050 kb on - strandat 4075.050 kb on - strandat 4075.092 kb on + strandat 4075.518 kb on - strand, within AO353_18515at 4075.700 kb on - strandat 4075.700 kb on - strandat 4075.702 kb on + strandat 4075.702 kb on + strandat 4075.702 kb on + strandat 4075.702 kb on + strandat 4075.703 kb on - strandat 4075.703 kb on - strandat 4075.703 kb on - strandat 4075.711 kb on + strandat 4075.711 kb on + strandat 4075.711 kb on + strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.712 kb on - strandat 4075.746 kb on - strandat 4075.779 kb on + strandat 4075.780 kb on - strandat 4075.953 kb on + strand, within AO353_18520at 4075.953 kb on + strand, within AO353_18520at 4075.953 kb on + strand, within AO353_18520at 4075.954 kb on - strand, within AO353_18520at 4075.954 kb on - strand, within AO353_18520

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
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4,073,949 + AO353_18500 0.56 -0.7
4,073,950 - AO353_18500 0.56 +0.9
4,074,227 + +0.7
4,074,227 + +0.1
4,074,227 + -0.3
4,074,227 + -1.1
4,074,227 + +0.5
4,074,228 - +0.2
4,074,228 - -0.4
4,074,228 - +0.0
4,074,228 - -2.5
4,074,228 - +1.3
4,074,228 - +1.1
4,074,228 - -0.1
4,074,230 + -0.8
4,074,258 + -0.1
4,074,259 - +0.2
4,074,259 - +0.5
4,074,278 + -0.8
4,074,278 + -0.2
4,074,278 + +0.1
4,074,278 + +0.5
4,074,279 - +2.1
4,074,279 - +0.1
4,074,279 - -0.8
4,074,279 - +0.2
4,074,279 - -0.6
4,074,318 + AO353_18505 0.16 -0.8
4,074,318 + AO353_18505 0.16 -1.4
4,074,718 + +0.2
4,074,719 - -0.8
4,074,719 - +0.1
4,074,814 + AO353_18510 0.14 -1.6
4,074,815 - AO353_18510 0.15 -0.1
4,074,830 + AO353_18510 0.20 -1.7
4,074,832 + AO353_18510 0.20 -0.8
4,074,832 + AO353_18510 0.20 -0.6
4,074,832 + AO353_18510 0.20 +1.1
4,074,833 - AO353_18510 0.21 -0.8
4,074,833 - AO353_18510 0.21 -0.9
4,074,833 - AO353_18510 0.21 -1.2
4,075,049 + -1.1
4,075,050 - +0.5
4,075,050 - +0.4
4,075,092 + -2.7
4,075,518 - AO353_18515 0.75 +0.1
4,075,700 - -3.1
4,075,700 - -1.6
4,075,702 + -0.9
4,075,702 + -2.1
4,075,702 + -2.4
4,075,702 + -1.8
4,075,703 - +0.9
4,075,703 - -1.2
4,075,703 - +0.1
4,075,711 + -2.0
4,075,711 + -2.1
4,075,711 + -0.9
4,075,712 - -0.7
4,075,712 - +0.7
4,075,712 - -0.5
4,075,712 - -0.5
4,075,712 - -1.9
4,075,712 - -0.8
4,075,746 - -0.1
4,075,779 + -0.1
4,075,780 - -0.5
4,075,953 + AO353_18520 0.23 +1.5
4,075,953 + AO353_18520 0.23 -0.2
4,075,953 + AO353_18520 0.23 +0.2
4,075,954 - AO353_18520 0.23 -2.4
4,075,954 - AO353_18520 0.23 +0.7

Or see this region's nucleotide sequence