Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_14015 and AO353_14020 are separated by 259 nucleotides AO353_14020 and AO353_14025 are separated by 280 nucleotides
AO353_14015: AO353_14015 - C4-dicarboxylate ABC transporter, at 3,111,778 to 3,113,091
_14015
AO353_14020: AO353_14020 - serine hydroxymethyltransferase, at 3,113,351 to 3,114,604
_14020
AO353_14025: AO353_14025 - diguanylate phosphodiesterase, at 3,114,885 to 3,118,733
_14025
Position (kb)
3113
3114
3115 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3112.409 kb on + strand, within AO353_14015 at 3112.409 kb on + strand, within AO353_14015 at 3112.410 kb on - strand, within AO353_14015 at 3112.410 kb on - strand, within AO353_14015 at 3112.410 kb on - strand, within AO353_14015 at 3112.410 kb on - strand, within AO353_14015 at 3112.410 kb on - strand, within AO353_14015 at 3112.410 kb on - strand, within AO353_14015 at 3112.457 kb on + strand, within AO353_14015 at 3112.458 kb on - strand, within AO353_14015 at 3112.458 kb on - strand, within AO353_14015 at 3112.458 kb on - strand, within AO353_14015 at 3112.458 kb on - strand, within AO353_14015 at 3112.458 kb on - strand, within AO353_14015 at 3112.853 kb on + strand, within AO353_14015 at 3112.853 kb on + strand, within AO353_14015 at 3112.853 kb on + strand, within AO353_14015 at 3112.853 kb on + strand, within AO353_14015 at 3112.853 kb on + strand, within AO353_14015 at 3112.853 kb on + strand, within AO353_14015 at 3112.853 kb on + strand, within AO353_14015 at 3112.854 kb on - strand, within AO353_14015 at 3112.854 kb on - strand, within AO353_14015 at 3112.854 kb on - strand, within AO353_14015 at 3112.854 kb on - strand, within AO353_14015 at 3112.854 kb on - strand, within AO353_14015 at 3112.911 kb on + strand, within AO353_14015 at 3112.911 kb on + strand, within AO353_14015 at 3112.911 kb on + strand, within AO353_14015 at 3112.991 kb on - strand at 3112.991 kb on - strand at 3112.991 kb on - strand at 3112.991 kb on - strand at 3112.991 kb on - strand at 3112.991 kb on - strand at 3112.991 kb on - strand at 3112.991 kb on - strand at 3113.004 kb on - strand at 3113.151 kb on + strand at 3113.151 kb on + strand at 3113.151 kb on + strand at 3113.151 kb on + strand at 3113.151 kb on + strand at 3113.151 kb on + strand at 3113.151 kb on + strand at 3113.151 kb on + strand at 3113.151 kb on + strand at 3113.151 kb on + strand at 3113.152 kb on - strand at 3113.152 kb on - strand at 3113.152 kb on - strand at 3113.152 kb on - strand at 3113.194 kb on + strand at 3113.195 kb on - strand at 3113.352 kb on + strand at 3114.492 kb on + strand at 3114.648 kb on - strand at 3114.648 kb on - strand at 3114.671 kb on + strand at 3114.671 kb on + strand at 3114.671 kb on + strand at 3114.671 kb on + strand at 3114.672 kb on - strand at 3114.672 kb on - strand at 3114.672 kb on - strand at 3114.672 kb on - strand at 3114.729 kb on - strand at 3114.962 kb on - strand at 3115.165 kb on + strand at 3115.165 kb on + strand at 3115.165 kb on + strand at 3115.165 kb on + strand at 3115.166 kb on - strand at 3115.166 kb on - strand at 3115.166 kb on - strand at 3115.166 kb on - strand at 3115.166 kb on - strand at 3115.166 kb on - strand at 3115.166 kb on - strand at 3115.166 kb on - strand at 3115.166 kb on - strand at 3115.166 kb on - strand at 3115.181 kb on - strand at 3115.274 kb on + strand, within AO353_14025 at 3115.274 kb on + strand, within AO353_14025 at 3115.581 kb on - strand, within AO353_14025
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 3,112,409 + AO353_14015 0.48 -0.6 3,112,409 + AO353_14015 0.48 -1.3 3,112,410 - AO353_14015 0.48 +0.8 3,112,410 - AO353_14015 0.48 -0.6 3,112,410 - AO353_14015 0.48 -0.1 3,112,410 - AO353_14015 0.48 -0.4 3,112,410 - AO353_14015 0.48 -1.1 3,112,410 - AO353_14015 0.48 +1.9 3,112,457 + AO353_14015 0.52 +0.9 3,112,458 - AO353_14015 0.52 +0.8 3,112,458 - AO353_14015 0.52 +0.7 3,112,458 - AO353_14015 0.52 +0.4 3,112,458 - AO353_14015 0.52 +0.2 3,112,458 - AO353_14015 0.52 +1.1 3,112,853 + AO353_14015 0.82 -2.3 3,112,853 + AO353_14015 0.82 +0.5 3,112,853 + AO353_14015 0.82 -0.0 3,112,853 + AO353_14015 0.82 +0.5 3,112,853 + AO353_14015 0.82 +1.9 3,112,853 + AO353_14015 0.82 -1.4 3,112,853 + AO353_14015 0.82 +0.2 3,112,854 - AO353_14015 0.82 +0.7 3,112,854 - AO353_14015 0.82 -1.0 3,112,854 - AO353_14015 0.82 +0.5 3,112,854 - AO353_14015 0.82 -2.6 3,112,854 - AO353_14015 0.82 +0.6 3,112,911 + AO353_14015 0.86 +0.3 3,112,911 + AO353_14015 0.86 +0.9 3,112,911 + AO353_14015 0.86 -0.6 3,112,991 - -0.0 3,112,991 - +0.4 3,112,991 - +0.9 3,112,991 - +0.8 3,112,991 - -0.0 3,112,991 - +0.4 3,112,991 - +0.9 3,112,991 - +0.5 3,113,004 - +0.2 3,113,151 + +0.6 3,113,151 + +0.3 3,113,151 + -0.2 3,113,151 + +0.5 3,113,151 + -0.3 3,113,151 + -0.4 3,113,151 + +1.9 3,113,151 + -1.6 3,113,151 + -0.4 3,113,151 + -0.7 3,113,152 - -0.1 3,113,152 - -0.7 3,113,152 - -0.1 3,113,152 - -0.4 3,113,194 + -0.4 3,113,195 - +0.4 3,113,352 + +0.1 3,114,492 + +1.3 3,114,648 - +1.9 3,114,648 - +1.0 3,114,671 + -0.2 3,114,671 + -1.3 3,114,671 + +2.5 3,114,671 + +0.1 3,114,672 - -0.6 3,114,672 - +0.2 3,114,672 - +0.1 3,114,672 - +0.3 3,114,729 - -0.7 3,114,962 - +0.2 3,115,165 + +1.5 3,115,165 + +0.9 3,115,165 + -1.4 3,115,165 + -0.0 3,115,166 - +0.3 3,115,166 - +0.0 3,115,166 - -1.6 3,115,166 - +0.9 3,115,166 - -0.6 3,115,166 - -0.4 3,115,166 - +0.2 3,115,166 - -0.1 3,115,166 - +1.3 3,115,166 - -0.2 3,115,181 - +0.0 3,115,274 + AO353_14025 0.10 +1.4 3,115,274 + AO353_14025 0.10 +0.3 3,115,581 - AO353_14025 0.18 -0.5
Or see this region's nucleotide sequence