Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13040

Experiment: Tetracycline 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13035 and AO353_13040 are separated by 252 nucleotidesAO353_13040 and AO353_13045 are separated by 42 nucleotides AO353_13035: AO353_13035 - serine/threonine protein phosphatase, at 2,886,502 to 2,887,317 _13035 AO353_13040: AO353_13040 - esterase, at 2,887,570 to 2,888,178 _13040 AO353_13045: AO353_13045 - DNA topoisomerase IV, at 2,888,221 to 2,890,125 _13045 Position (kb) 2887 2888 2889Strain fitness (log2 ratio) -2 -1 0 1at 2887.376 kb on + strandat 2887.531 kb on + strandat 2887.532 kb on - strandat 2887.532 kb on - strandat 2887.588 kb on + strandat 2887.588 kb on + strandat 2887.588 kb on + strandat 2887.588 kb on + strandat 2887.588 kb on + strandat 2887.588 kb on + strandat 2887.588 kb on + strandat 2887.589 kb on - strandat 2887.589 kb on - strandat 2887.589 kb on - strandat 2887.589 kb on - strandat 2887.590 kb on + strandat 2887.590 kb on + strandat 2887.590 kb on + strandat 2887.590 kb on + strandat 2887.591 kb on - strandat 2887.591 kb on - strandat 2887.784 kb on - strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.786 kb on + strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.787 kb on - strand, within AO353_13040at 2887.894 kb on + strand, within AO353_13040at 2887.894 kb on + strand, within AO353_13040at 2887.894 kb on + strand, within AO353_13040at 2887.894 kb on + strand, within AO353_13040at 2887.895 kb on - strand, within AO353_13040at 2887.895 kb on - strand, within AO353_13040at 2887.895 kb on - strand, within AO353_13040at 2887.895 kb on - strand, within AO353_13040at 2887.896 kb on + strand, within AO353_13040at 2888.038 kb on + strand, within AO353_13040at 2888.038 kb on + strand, within AO353_13040at 2888.038 kb on + strand, within AO353_13040at 2888.038 kb on + strand, within AO353_13040at 2888.082 kb on + strand, within AO353_13040at 2888.082 kb on + strand, within AO353_13040at 2888.117 kb on + strand, within AO353_13040at 2888.117 kb on + strand, within AO353_13040at 2888.149 kb on + strandat 2888.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
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2,887,376 + -0.5
2,887,531 + -0.5
2,887,532 - -0.7
2,887,532 - +1.4
2,887,588 + -0.2
2,887,588 + -0.1
2,887,588 + -1.5
2,887,588 + +0.4
2,887,588 + -0.0
2,887,588 + +0.6
2,887,588 + +0.9
2,887,589 - -1.8
2,887,589 - +0.5
2,887,589 - -1.1
2,887,589 - -2.4
2,887,590 + -0.8
2,887,590 + -0.3
2,887,590 + -0.2
2,887,590 + -1.6
2,887,591 - -2.2
2,887,591 - +0.1
2,887,784 - AO353_13040 0.35 +0.4
2,887,786 + AO353_13040 0.35 -2.3
2,887,786 + AO353_13040 0.35 -1.0
2,887,786 + AO353_13040 0.35 -1.3
2,887,786 + AO353_13040 0.35 -1.3
2,887,786 + AO353_13040 0.35 +0.4
2,887,786 + AO353_13040 0.35 -1.3
2,887,786 + AO353_13040 0.35 +0.1
2,887,786 + AO353_13040 0.35 -0.3
2,887,786 + AO353_13040 0.35 -2.2
2,887,786 + AO353_13040 0.35 -1.0
2,887,786 + AO353_13040 0.35 +0.3
2,887,786 + AO353_13040 0.35 -0.1
2,887,787 - AO353_13040 0.36 -0.3
2,887,787 - AO353_13040 0.36 -0.5
2,887,787 - AO353_13040 0.36 -2.0
2,887,787 - AO353_13040 0.36 +1.0
2,887,787 - AO353_13040 0.36 -1.1
2,887,787 - AO353_13040 0.36 -0.3
2,887,787 - AO353_13040 0.36 -0.6
2,887,787 - AO353_13040 0.36 -2.1
2,887,787 - AO353_13040 0.36 -1.9
2,887,787 - AO353_13040 0.36 -2.3
2,887,787 - AO353_13040 0.36 -0.8
2,887,787 - AO353_13040 0.36 -0.2
2,887,787 - AO353_13040 0.36 -0.4
2,887,787 - AO353_13040 0.36 -0.3
2,887,787 - AO353_13040 0.36 -0.6
2,887,894 + AO353_13040 0.53 -1.0
2,887,894 + AO353_13040 0.53 +0.7
2,887,894 + AO353_13040 0.53 +0.7
2,887,894 + AO353_13040 0.53 -0.0
2,887,895 - AO353_13040 0.53 -0.8
2,887,895 - AO353_13040 0.53 +0.4
2,887,895 - AO353_13040 0.53 -0.8
2,887,895 - AO353_13040 0.53 -1.1
2,887,896 + AO353_13040 0.54 +0.7
2,888,038 + AO353_13040 0.77 -2.3
2,888,038 + AO353_13040 0.77 -0.8
2,888,038 + AO353_13040 0.77 +0.4
2,888,038 + AO353_13040 0.77 +0.2
2,888,082 + AO353_13040 0.84 -0.7
2,888,082 + AO353_13040 0.84 +0.2
2,888,117 + AO353_13040 0.90 -1.1
2,888,117 + AO353_13040 0.90 +0.2
2,888,149 + -1.7
2,888,190 + +0.4

Or see this region's nucleotide sequence