Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_13035 and AO353_13040 are separated by 252 nucleotides AO353_13040 and AO353_13045 are separated by 42 nucleotides
AO353_13035: AO353_13035 - serine/threonine protein phosphatase, at 2,886,502 to 2,887,317
_13035
AO353_13040: AO353_13040 - esterase, at 2,887,570 to 2,888,178
_13040
AO353_13045: AO353_13045 - DNA topoisomerase IV, at 2,888,221 to 2,890,125
_13045
Position (kb)
2887
2888
2889 Strain fitness (log2 ratio)
-2
-1
0
1 at 2887.376 kb on + strand at 2887.531 kb on + strand at 2887.532 kb on - strand at 2887.532 kb on - strand at 2887.588 kb on + strand at 2887.588 kb on + strand at 2887.588 kb on + strand at 2887.588 kb on + strand at 2887.588 kb on + strand at 2887.588 kb on + strand at 2887.588 kb on + strand at 2887.589 kb on - strand at 2887.589 kb on - strand at 2887.589 kb on - strand at 2887.589 kb on - strand at 2887.590 kb on + strand at 2887.590 kb on + strand at 2887.590 kb on + strand at 2887.590 kb on + strand at 2887.591 kb on - strand at 2887.591 kb on - strand at 2887.784 kb on - strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.786 kb on + strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.787 kb on - strand, within AO353_13040 at 2887.894 kb on + strand, within AO353_13040 at 2887.894 kb on + strand, within AO353_13040 at 2887.894 kb on + strand, within AO353_13040 at 2887.894 kb on + strand, within AO353_13040 at 2887.895 kb on - strand, within AO353_13040 at 2887.895 kb on - strand, within AO353_13040 at 2887.895 kb on - strand, within AO353_13040 at 2887.895 kb on - strand, within AO353_13040 at 2887.896 kb on + strand, within AO353_13040 at 2888.038 kb on + strand, within AO353_13040 at 2888.038 kb on + strand, within AO353_13040 at 2888.038 kb on + strand, within AO353_13040 at 2888.038 kb on + strand, within AO353_13040 at 2888.082 kb on + strand, within AO353_13040 at 2888.082 kb on + strand, within AO353_13040 at 2888.117 kb on + strand, within AO353_13040 at 2888.117 kb on + strand, within AO353_13040 at 2888.149 kb on + strand at 2888.190 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 2,887,376 + -0.5 2,887,531 + -0.5 2,887,532 - -0.7 2,887,532 - +1.4 2,887,588 + -0.2 2,887,588 + -0.1 2,887,588 + -1.5 2,887,588 + +0.4 2,887,588 + -0.0 2,887,588 + +0.6 2,887,588 + +0.9 2,887,589 - -1.8 2,887,589 - +0.5 2,887,589 - -1.1 2,887,589 - -2.4 2,887,590 + -0.8 2,887,590 + -0.3 2,887,590 + -0.2 2,887,590 + -1.6 2,887,591 - -2.2 2,887,591 - +0.1 2,887,784 - AO353_13040 0.35 +0.4 2,887,786 + AO353_13040 0.35 -2.3 2,887,786 + AO353_13040 0.35 -1.0 2,887,786 + AO353_13040 0.35 -1.3 2,887,786 + AO353_13040 0.35 -1.3 2,887,786 + AO353_13040 0.35 +0.4 2,887,786 + AO353_13040 0.35 -1.3 2,887,786 + AO353_13040 0.35 +0.1 2,887,786 + AO353_13040 0.35 -0.3 2,887,786 + AO353_13040 0.35 -2.2 2,887,786 + AO353_13040 0.35 -1.0 2,887,786 + AO353_13040 0.35 +0.3 2,887,786 + AO353_13040 0.35 -0.1 2,887,787 - AO353_13040 0.36 -0.3 2,887,787 - AO353_13040 0.36 -0.5 2,887,787 - AO353_13040 0.36 -2.0 2,887,787 - AO353_13040 0.36 +1.0 2,887,787 - AO353_13040 0.36 -1.1 2,887,787 - AO353_13040 0.36 -0.3 2,887,787 - AO353_13040 0.36 -0.6 2,887,787 - AO353_13040 0.36 -2.1 2,887,787 - AO353_13040 0.36 -1.9 2,887,787 - AO353_13040 0.36 -2.3 2,887,787 - AO353_13040 0.36 -0.8 2,887,787 - AO353_13040 0.36 -0.2 2,887,787 - AO353_13040 0.36 -0.4 2,887,787 - AO353_13040 0.36 -0.3 2,887,787 - AO353_13040 0.36 -0.6 2,887,894 + AO353_13040 0.53 -1.0 2,887,894 + AO353_13040 0.53 +0.7 2,887,894 + AO353_13040 0.53 +0.7 2,887,894 + AO353_13040 0.53 -0.0 2,887,895 - AO353_13040 0.53 -0.8 2,887,895 - AO353_13040 0.53 +0.4 2,887,895 - AO353_13040 0.53 -0.8 2,887,895 - AO353_13040 0.53 -1.1 2,887,896 + AO353_13040 0.54 +0.7 2,888,038 + AO353_13040 0.77 -2.3 2,888,038 + AO353_13040 0.77 -0.8 2,888,038 + AO353_13040 0.77 +0.4 2,888,038 + AO353_13040 0.77 +0.2 2,888,082 + AO353_13040 0.84 -0.7 2,888,082 + AO353_13040 0.84 +0.2 2,888,117 + AO353_13040 0.90 -1.1 2,888,117 + AO353_13040 0.90 +0.2 2,888,149 + -1.7 2,888,190 + +0.4
Or see this region's nucleotide sequence