Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08650

Experiment: Tetracycline 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08640 and AO353_08645 are separated by 73 nucleotidesAO353_08645 and AO353_08650 are separated by 33 nucleotidesAO353_08650 and AO353_08655 overlap by 4 nucleotidesAO353_08655 and AO353_08660 are separated by 8 nucleotides AO353_08640: AO353_08640 - hypothetical protein, at 1,899,248 to 1,899,976 _08640 AO353_08645: AO353_08645 - transporter, at 1,900,050 to 1,900,265 _08645 AO353_08650: AO353_08650 - aliphatic sulfonate ABC transporter ATP-binding protein, at 1,900,299 to 1,901,105 _08650 AO353_08655: AO353_08655 - alkanesulfonate transporter permease subunit, at 1,901,102 to 1,901,890 _08655 AO353_08660: AO353_08660 - alkanesulfonate monooxygenase, at 1,901,899 to 1,903,047 _08660 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -2 -1 0 1 2at 1899.357 kb on - strand, within AO353_08640at 1899.431 kb on + strand, within AO353_08640at 1899.432 kb on - strand, within AO353_08640at 1899.741 kb on + strand, within AO353_08640at 1899.830 kb on + strand, within AO353_08640at 1899.850 kb on - strand, within AO353_08640at 1899.856 kb on + strand, within AO353_08640at 1899.892 kb on + strand, within AO353_08640at 1899.892 kb on + strand, within AO353_08640at 1899.913 kb on + strandat 1899.931 kb on + strandat 1899.931 kb on + strandat 1899.931 kb on + strandat 1899.931 kb on + strandat 1899.931 kb on + strandat 1899.931 kb on + strandat 1899.931 kb on + strandat 1899.931 kb on + strandat 1899.931 kb on + strandat 1899.931 kb on + strandat 1899.932 kb on - strandat 1899.932 kb on - strandat 1899.932 kb on - strandat 1899.932 kb on - strandat 1899.932 kb on - strandat 1899.932 kb on - strandat 1899.932 kb on - strandat 1899.934 kb on - strandat 1899.963 kb on + strandat 1899.999 kb on + strandat 1899.999 kb on + strandat 1899.999 kb on + strandat 1900.000 kb on - strandat 1900.000 kb on - strandat 1900.000 kb on - strandat 1900.220 kb on + strand, within AO353_08645at 1900.220 kb on + strand, within AO353_08645at 1900.220 kb on + strand, within AO353_08645at 1900.220 kb on + strand, within AO353_08645at 1900.544 kb on + strand, within AO353_08650at 1900.544 kb on + strand, within AO353_08650at 1900.544 kb on + strand, within AO353_08650at 1900.545 kb on - strand, within AO353_08650at 1900.545 kb on - strand, within AO353_08650at 1900.943 kb on + strand, within AO353_08650at 1900.943 kb on + strand, within AO353_08650at 1900.943 kb on + strand, within AO353_08650at 1900.944 kb on - strand, within AO353_08650at 1900.944 kb on - strand, within AO353_08650at 1900.944 kb on - strand, within AO353_08650at 1900.944 kb on - strand, within AO353_08650at 1900.950 kb on - strand, within AO353_08650at 1901.120 kb on - strandat 1901.130 kb on + strandat 1901.205 kb on + strand, within AO353_08655at 1901.415 kb on + strand, within AO353_08655at 1901.415 kb on + strand, within AO353_08655at 1901.415 kb on + strand, within AO353_08655at 1901.415 kb on + strand, within AO353_08655at 1901.415 kb on + strand, within AO353_08655at 1901.416 kb on - strand, within AO353_08655at 1901.419 kb on + strand, within AO353_08655at 1901.419 kb on + strand, within AO353_08655at 1901.419 kb on + strand, within AO353_08655at 1901.419 kb on + strand, within AO353_08655at 1901.419 kb on + strand, within AO353_08655at 1901.419 kb on + strand, within AO353_08655at 1901.420 kb on - strand, within AO353_08655at 1901.420 kb on - strand, within AO353_08655at 1901.420 kb on - strand, within AO353_08655at 1901.420 kb on - strand, within AO353_08655at 1901.420 kb on - strand, within AO353_08655at 1901.420 kb on - strand, within AO353_08655at 1901.420 kb on - strand, within AO353_08655at 1901.466 kb on + strand, within AO353_08655at 1901.466 kb on + strand, within AO353_08655at 1901.466 kb on + strand, within AO353_08655at 1901.466 kb on + strand, within AO353_08655at 1901.466 kb on + strand, within AO353_08655at 1901.466 kb on + strand, within AO353_08655at 1901.466 kb on + strand, within AO353_08655at 1901.466 kb on + strand, within AO353_08655at 1901.466 kb on + strand, within AO353_08655at 1901.467 kb on - strand, within AO353_08655at 1901.467 kb on - strand, within AO353_08655at 1901.467 kb on - strand, within AO353_08655at 1901.467 kb on - strand, within AO353_08655at 1901.467 kb on - strand, within AO353_08655at 1901.467 kb on - strand, within AO353_08655at 1901.467 kb on - strand, within AO353_08655at 1901.467 kb on - strand, within AO353_08655at 1901.478 kb on + strand, within AO353_08655at 1901.478 kb on + strand, within AO353_08655at 1901.478 kb on + strand, within AO353_08655at 1901.478 kb on + strand, within AO353_08655at 1901.479 kb on - strand, within AO353_08655at 1901.479 kb on - strand, within AO353_08655at 1901.834 kb on + strandat 1901.873 kb on - strandat 1901.964 kb on - strandat 1901.964 kb on - strandat 1902.066 kb on + strand, within AO353_08660at 1902.066 kb on + strand, within AO353_08660at 1902.067 kb on - strand, within AO353_08660at 1902.072 kb on + strand, within AO353_08660at 1902.072 kb on + strand, within AO353_08660at 1902.072 kb on + strand, within AO353_08660at 1902.072 kb on + strand, within AO353_08660at 1902.092 kb on + strand, within AO353_08660at 1902.092 kb on + strand, within AO353_08660at 1902.092 kb on + strand, within AO353_08660at 1902.093 kb on - strand, within AO353_08660at 1902.093 kb on - strand, within AO353_08660at 1902.093 kb on - strand, within AO353_08660

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
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1,899,357 - AO353_08640 0.15 +1.2
1,899,431 + AO353_08640 0.25 -0.2
1,899,432 - AO353_08640 0.25 +0.9
1,899,741 + AO353_08640 0.68 -0.1
1,899,830 + AO353_08640 0.80 +0.7
1,899,850 - AO353_08640 0.83 +0.3
1,899,856 + AO353_08640 0.83 +0.6
1,899,892 + AO353_08640 0.88 -1.0
1,899,892 + AO353_08640 0.88 -1.1
1,899,913 + -2.1
1,899,931 + +0.0
1,899,931 + +1.1
1,899,931 + +0.4
1,899,931 + -2.4
1,899,931 + -1.4
1,899,931 + -0.1
1,899,931 + +0.5
1,899,931 + +0.8
1,899,931 + +0.2
1,899,931 + -1.7
1,899,932 - -0.4
1,899,932 - +2.0
1,899,932 - -1.3
1,899,932 - -1.1
1,899,932 - +0.4
1,899,932 - +0.3
1,899,932 - -0.3
1,899,934 - +1.0
1,899,963 + +0.2
1,899,999 + -0.5
1,899,999 + -0.4
1,899,999 + +0.1
1,900,000 - +0.2
1,900,000 - +0.2
1,900,000 - -0.7
1,900,220 + AO353_08645 0.79 -0.0
1,900,220 + AO353_08645 0.79 +0.6
1,900,220 + AO353_08645 0.79 +0.2
1,900,220 + AO353_08645 0.79 -0.8
1,900,544 + AO353_08650 0.30 +0.0
1,900,544 + AO353_08650 0.30 -1.8
1,900,544 + AO353_08650 0.30 -0.8
1,900,545 - AO353_08650 0.30 +0.0
1,900,545 - AO353_08650 0.30 -1.0
1,900,943 + AO353_08650 0.80 -1.7
1,900,943 + AO353_08650 0.80 -0.6
1,900,943 + AO353_08650 0.80 -0.3
1,900,944 - AO353_08650 0.80 +0.0
1,900,944 - AO353_08650 0.80 -0.3
1,900,944 - AO353_08650 0.80 -0.3
1,900,944 - AO353_08650 0.80 -1.8
1,900,950 - AO353_08650 0.81 -0.3
1,901,120 - -0.2
1,901,130 + -0.3
1,901,205 + AO353_08655 0.13 -0.1
1,901,415 + AO353_08655 0.40 +0.4
1,901,415 + AO353_08655 0.40 +1.3
1,901,415 + AO353_08655 0.40 -1.1
1,901,415 + AO353_08655 0.40 -0.9
1,901,415 + AO353_08655 0.40 -0.3
1,901,416 - AO353_08655 0.40 +2.0
1,901,419 + AO353_08655 0.40 -0.2
1,901,419 + AO353_08655 0.40 -0.1
1,901,419 + AO353_08655 0.40 +1.0
1,901,419 + AO353_08655 0.40 -0.3
1,901,419 + AO353_08655 0.40 -0.4
1,901,419 + AO353_08655 0.40 -1.7
1,901,420 - AO353_08655 0.40 -2.2
1,901,420 - AO353_08655 0.40 -0.6
1,901,420 - AO353_08655 0.40 -2.3
1,901,420 - AO353_08655 0.40 -0.9
1,901,420 - AO353_08655 0.40 +0.6
1,901,420 - AO353_08655 0.40 -0.6
1,901,420 - AO353_08655 0.40 +0.3
1,901,466 + AO353_08655 0.46 +0.4
1,901,466 + AO353_08655 0.46 -1.1
1,901,466 + AO353_08655 0.46 -1.6
1,901,466 + AO353_08655 0.46 -0.1
1,901,466 + AO353_08655 0.46 -0.4
1,901,466 + AO353_08655 0.46 +2.0
1,901,466 + AO353_08655 0.46 -0.6
1,901,466 + AO353_08655 0.46 +0.3
1,901,466 + AO353_08655 0.46 +0.2
1,901,467 - AO353_08655 0.46 -0.1
1,901,467 - AO353_08655 0.46 -0.4
1,901,467 - AO353_08655 0.46 +0.8
1,901,467 - AO353_08655 0.46 +1.0
1,901,467 - AO353_08655 0.46 -0.2
1,901,467 - AO353_08655 0.46 -0.4
1,901,467 - AO353_08655 0.46 +0.4
1,901,467 - AO353_08655 0.46 +0.2
1,901,478 + AO353_08655 0.48 -0.0
1,901,478 + AO353_08655 0.48 -1.6
1,901,478 + AO353_08655 0.48 -1.0
1,901,478 + AO353_08655 0.48 +0.2
1,901,479 - AO353_08655 0.48 +1.4
1,901,479 - AO353_08655 0.48 +0.8
1,901,834 + +0.0
1,901,873 - +0.2
1,901,964 - +0.7
1,901,964 - -0.8
1,902,066 + AO353_08660 0.15 -0.7
1,902,066 + AO353_08660 0.15 +0.3
1,902,067 - AO353_08660 0.15 -0.6
1,902,072 + AO353_08660 0.15 -0.4
1,902,072 + AO353_08660 0.15 -0.8
1,902,072 + AO353_08660 0.15 +0.2
1,902,072 + AO353_08660 0.15 +0.0
1,902,092 + AO353_08660 0.17 +0.4
1,902,092 + AO353_08660 0.17 -0.3
1,902,092 + AO353_08660 0.17 -0.4
1,902,093 - AO353_08660 0.17 +0.5
1,902,093 - AO353_08660 0.17 +0.8
1,902,093 - AO353_08660 0.17 -1.1

Or see this region's nucleotide sequence