Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07960

Experiment: Tetracycline 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07955 and AO353_07960 are separated by 273 nucleotidesAO353_07960 and AO353_07965 are separated by 18 nucleotides AO353_07955: AO353_07955 - transketolase, at 1,753,201 to 1,755,198 _07955 AO353_07960: AO353_07960 - ArsR family transcriptional regulator, at 1,755,472 to 1,756,467 _07960 AO353_07965: AO353_07965 - S-adenosylmethionine synthetase, at 1,756,486 to 1,757,676 _07965 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -2 -1 0 1 2at 1755.297 kb on + strandat 1755.297 kb on + strandat 1755.298 kb on - strandat 1755.298 kb on - strandat 1755.298 kb on - strandat 1755.298 kb on - strandat 1755.298 kb on - strandat 1755.361 kb on + strandat 1755.362 kb on - strandat 1755.362 kb on - strandat 1755.362 kb on - strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.370 kb on - strandat 1755.370 kb on - strandat 1755.370 kb on - strandat 1755.375 kb on + strandat 1755.375 kb on + strandat 1755.375 kb on + strandat 1755.376 kb on - strandat 1755.376 kb on - strandat 1755.376 kb on - strandat 1755.410 kb on + strandat 1755.410 kb on + strandat 1755.410 kb on + strandat 1755.411 kb on - strandat 1755.426 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.458 kb on - strandat 1755.471 kb on + strandat 1755.479 kb on + strandat 1755.479 kb on + strandat 1755.479 kb on + strandat 1756.056 kb on + strand, within AO353_07960at 1756.148 kb on + strand, within AO353_07960at 1756.148 kb on + strand, within AO353_07960at 1756.172 kb on + strand, within AO353_07960at 1756.172 kb on + strand, within AO353_07960at 1756.172 kb on + strand, within AO353_07960at 1756.172 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.271 kb on + strand, within AO353_07960at 1756.275 kb on + strand, within AO353_07960at 1756.275 kb on + strand, within AO353_07960at 1756.275 kb on + strand, within AO353_07960at 1756.275 kb on + strand, within AO353_07960at 1756.275 kb on + strand, within AO353_07960at 1756.275 kb on + strand, within AO353_07960at 1756.390 kb on + strandat 1756.390 kb on + strandat 1756.390 kb on + strandat 1756.390 kb on + strandat 1756.390 kb on + strandat 1756.390 kb on + strandat 1756.394 kb on + strandat 1756.394 kb on + strandat 1756.394 kb on + strandat 1756.394 kb on + strandat 1756.394 kb on + strandat 1756.394 kb on + strandat 1756.394 kb on + strandat 1756.394 kb on + strandat 1756.400 kb on + strandat 1756.400 kb on + strandat 1756.400 kb on + strandat 1756.400 kb on + strandat 1756.400 kb on + strandat 1756.400 kb on + strandat 1756.400 kb on + strandat 1756.400 kb on + strandat 1756.400 kb on + strandat 1756.404 kb on + strandat 1756.404 kb on + strandat 1756.404 kb on + strandat 1756.404 kb on + strandat 1756.404 kb on + strandat 1756.404 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
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1,755,297 + -0.0
1,755,297 + +1.2
1,755,298 - -0.3
1,755,298 - -1.3
1,755,298 - +0.1
1,755,298 - +0.5
1,755,298 - +0.4
1,755,361 + +1.2
1,755,362 - +0.1
1,755,362 - -0.7
1,755,362 - -0.0
1,755,369 + -0.2
1,755,369 + +1.1
1,755,369 + -1.4
1,755,369 + -0.2
1,755,369 + +0.1
1,755,369 + -0.3
1,755,370 - -1.7
1,755,370 - -0.3
1,755,370 - +0.1
1,755,375 + +0.7
1,755,375 + -0.5
1,755,375 + +0.2
1,755,376 - +1.6
1,755,376 - -0.5
1,755,376 - -1.0
1,755,410 + -0.0
1,755,410 + -0.9
1,755,410 + +0.5
1,755,411 - -0.0
1,755,426 + -0.5
1,755,457 + -0.0
1,755,457 + -0.5
1,755,457 + +0.4
1,755,457 + -1.2
1,755,457 + +1.1
1,755,457 + -0.8
1,755,457 + +0.4
1,755,458 - -1.2
1,755,471 + -0.4
1,755,479 + +0.8
1,755,479 + -1.6
1,755,479 + -0.8
1,756,056 + AO353_07960 0.59 +0.6
1,756,148 + AO353_07960 0.68 -0.2
1,756,148 + AO353_07960 0.68 -0.9
1,756,172 + AO353_07960 0.70 -0.2
1,756,172 + AO353_07960 0.70 -0.0
1,756,172 + AO353_07960 0.70 +1.0
1,756,172 + AO353_07960 0.70 -0.1
1,756,271 + AO353_07960 0.80 +0.7
1,756,271 + AO353_07960 0.80 -0.5
1,756,271 + AO353_07960 0.80 -1.5
1,756,271 + AO353_07960 0.80 -0.5
1,756,271 + AO353_07960 0.80 -1.5
1,756,271 + AO353_07960 0.80 -0.7
1,756,271 + AO353_07960 0.80 -0.0
1,756,271 + AO353_07960 0.80 -1.1
1,756,271 + AO353_07960 0.80 -0.8
1,756,271 + AO353_07960 0.80 -0.5
1,756,271 + AO353_07960 0.80 -1.0
1,756,271 + AO353_07960 0.80 -0.2
1,756,271 + AO353_07960 0.80 -1.5
1,756,271 + AO353_07960 0.80 +1.8
1,756,271 + AO353_07960 0.80 -0.7
1,756,271 + AO353_07960 0.80 -2.0
1,756,271 + AO353_07960 0.80 -1.7
1,756,271 + AO353_07960 0.80 -0.8
1,756,275 + AO353_07960 0.81 +0.7
1,756,275 + AO353_07960 0.81 -0.0
1,756,275 + AO353_07960 0.81 -1.4
1,756,275 + AO353_07960 0.81 -0.2
1,756,275 + AO353_07960 0.81 +1.5
1,756,275 + AO353_07960 0.81 -0.3
1,756,390 + -0.4
1,756,390 + -0.8
1,756,390 + +0.6
1,756,390 + +0.5
1,756,390 + -0.4
1,756,390 + -2.4
1,756,394 + -0.6
1,756,394 + +0.7
1,756,394 + +0.9
1,756,394 + -0.4
1,756,394 + +2.2
1,756,394 + -1.0
1,756,394 + +0.1
1,756,394 + -0.4
1,756,400 + +0.5
1,756,400 + -1.1
1,756,400 + -0.2
1,756,400 + -1.3
1,756,400 + -1.7
1,756,400 + +1.1
1,756,400 + -1.0
1,756,400 + -0.2
1,756,400 + +1.0
1,756,404 + +1.0
1,756,404 + -0.4
1,756,404 + +0.9
1,756,404 + -0.4
1,756,404 + +0.7
1,756,404 + -0.9

Or see this region's nucleotide sequence