Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07955 and AO353_07960 are separated by 273 nucleotides AO353_07960 and AO353_07965 are separated by 18 nucleotides
AO353_07955: AO353_07955 - transketolase, at 1,753,201 to 1,755,198
_07955
AO353_07960: AO353_07960 - ArsR family transcriptional regulator, at 1,755,472 to 1,756,467
_07960
AO353_07965: AO353_07965 - S-adenosylmethionine synthetase, at 1,756,486 to 1,757,676
_07965
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1755.297 kb on + strand at 1755.297 kb on + strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.361 kb on + strand at 1755.362 kb on - strand at 1755.362 kb on - strand at 1755.362 kb on - strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.370 kb on - strand at 1755.370 kb on - strand at 1755.370 kb on - strand at 1755.375 kb on + strand at 1755.375 kb on + strand at 1755.375 kb on + strand at 1755.376 kb on - strand at 1755.376 kb on - strand at 1755.376 kb on - strand at 1755.410 kb on + strand at 1755.410 kb on + strand at 1755.410 kb on + strand at 1755.411 kb on - strand at 1755.426 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.458 kb on - strand at 1755.471 kb on + strand at 1755.479 kb on + strand at 1755.479 kb on + strand at 1755.479 kb on + strand at 1756.056 kb on + strand, within AO353_07960 at 1756.148 kb on + strand, within AO353_07960 at 1756.148 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 1,755,297 + -0.0 1,755,297 + +1.2 1,755,298 - -0.3 1,755,298 - -1.3 1,755,298 - +0.1 1,755,298 - +0.5 1,755,298 - +0.4 1,755,361 + +1.2 1,755,362 - +0.1 1,755,362 - -0.7 1,755,362 - -0.0 1,755,369 + -0.2 1,755,369 + +1.1 1,755,369 + -1.4 1,755,369 + -0.2 1,755,369 + +0.1 1,755,369 + -0.3 1,755,370 - -1.7 1,755,370 - -0.3 1,755,370 - +0.1 1,755,375 + +0.7 1,755,375 + -0.5 1,755,375 + +0.2 1,755,376 - +1.6 1,755,376 - -0.5 1,755,376 - -1.0 1,755,410 + -0.0 1,755,410 + -0.9 1,755,410 + +0.5 1,755,411 - -0.0 1,755,426 + -0.5 1,755,457 + -0.0 1,755,457 + -0.5 1,755,457 + +0.4 1,755,457 + -1.2 1,755,457 + +1.1 1,755,457 + -0.8 1,755,457 + +0.4 1,755,458 - -1.2 1,755,471 + -0.4 1,755,479 + +0.8 1,755,479 + -1.6 1,755,479 + -0.8 1,756,056 + AO353_07960 0.59 +0.6 1,756,148 + AO353_07960 0.68 -0.2 1,756,148 + AO353_07960 0.68 -0.9 1,756,172 + AO353_07960 0.70 -0.2 1,756,172 + AO353_07960 0.70 -0.0 1,756,172 + AO353_07960 0.70 +1.0 1,756,172 + AO353_07960 0.70 -0.1 1,756,271 + AO353_07960 0.80 +0.7 1,756,271 + AO353_07960 0.80 -0.5 1,756,271 + AO353_07960 0.80 -1.5 1,756,271 + AO353_07960 0.80 -0.5 1,756,271 + AO353_07960 0.80 -1.5 1,756,271 + AO353_07960 0.80 -0.7 1,756,271 + AO353_07960 0.80 -0.0 1,756,271 + AO353_07960 0.80 -1.1 1,756,271 + AO353_07960 0.80 -0.8 1,756,271 + AO353_07960 0.80 -0.5 1,756,271 + AO353_07960 0.80 -1.0 1,756,271 + AO353_07960 0.80 -0.2 1,756,271 + AO353_07960 0.80 -1.5 1,756,271 + AO353_07960 0.80 +1.8 1,756,271 + AO353_07960 0.80 -0.7 1,756,271 + AO353_07960 0.80 -2.0 1,756,271 + AO353_07960 0.80 -1.7 1,756,271 + AO353_07960 0.80 -0.8 1,756,275 + AO353_07960 0.81 +0.7 1,756,275 + AO353_07960 0.81 -0.0 1,756,275 + AO353_07960 0.81 -1.4 1,756,275 + AO353_07960 0.81 -0.2 1,756,275 + AO353_07960 0.81 +1.5 1,756,275 + AO353_07960 0.81 -0.3 1,756,390 + -0.4 1,756,390 + -0.8 1,756,390 + +0.6 1,756,390 + +0.5 1,756,390 + -0.4 1,756,390 + -2.4 1,756,394 + -0.6 1,756,394 + +0.7 1,756,394 + +0.9 1,756,394 + -0.4 1,756,394 + +2.2 1,756,394 + -1.0 1,756,394 + +0.1 1,756,394 + -0.4 1,756,400 + +0.5 1,756,400 + -1.1 1,756,400 + -0.2 1,756,400 + -1.3 1,756,400 + -1.7 1,756,400 + +1.1 1,756,400 + -1.0 1,756,400 + -0.2 1,756,400 + +1.0 1,756,404 + +1.0 1,756,404 + -0.4 1,756,404 + +0.9 1,756,404 + -0.4 1,756,404 + +0.7 1,756,404 + -0.9
Or see this region's nucleotide sequence