Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06415

Experiment: Tetracycline 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06410 and AO353_06415 are separated by 89 nucleotidesAO353_06415 and AO353_06420 are separated by 39 nucleotides AO353_06410: AO353_06410 - leucine--tRNA ligase, at 1,428,473 to 1,431,079 _06410 AO353_06415: AO353_06415 - hypothetical protein, at 1,431,169 to 1,431,774 _06415 AO353_06420: AO353_06420 - DNA polymerase III subunit delta, at 1,431,814 to 1,432,851 _06420 Position (kb) 1431 1432Strain fitness (log2 ratio) -2 -1 0 1 2at 1431.077 kb on + strandat 1431.077 kb on + strandat 1431.077 kb on + strandat 1431.077 kb on + strandat 1431.077 kb on + strandat 1431.077 kb on + strandat 1431.077 kb on + strandat 1431.101 kb on + strandat 1431.352 kb on + strand, within AO353_06415at 1431.352 kb on + strand, within AO353_06415at 1431.367 kb on + strand, within AO353_06415at 1431.367 kb on + strand, within AO353_06415at 1431.367 kb on + strand, within AO353_06415at 1431.367 kb on + strand, within AO353_06415at 1431.367 kb on + strand, within AO353_06415at 1431.367 kb on + strand, within AO353_06415at 1431.367 kb on + strand, within AO353_06415at 1431.377 kb on + strand, within AO353_06415at 1431.442 kb on + strand, within AO353_06415at 1431.442 kb on + strand, within AO353_06415at 1431.466 kb on + strand, within AO353_06415at 1431.466 kb on + strand, within AO353_06415at 1431.466 kb on + strand, within AO353_06415at 1431.639 kb on + strand, within AO353_06415at 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.753 kb on + strandat 1431.761 kb on + strandat 1431.761 kb on + strandat 1431.761 kb on + strandat 1431.761 kb on + strandat 1431.813 kb on + strandat 1431.871 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
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1,431,077 + +0.6
1,431,077 + -1.0
1,431,077 + +1.5
1,431,077 + -0.5
1,431,077 + -1.1
1,431,077 + +0.4
1,431,077 + +0.6
1,431,101 + +1.3
1,431,352 + AO353_06415 0.30 -1.6
1,431,352 + AO353_06415 0.30 -1.6
1,431,367 + AO353_06415 0.33 -0.9
1,431,367 + AO353_06415 0.33 -0.1
1,431,367 + AO353_06415 0.33 -0.1
1,431,367 + AO353_06415 0.33 -0.6
1,431,367 + AO353_06415 0.33 -0.7
1,431,367 + AO353_06415 0.33 -1.7
1,431,367 + AO353_06415 0.33 -2.5
1,431,377 + AO353_06415 0.34 -0.7
1,431,442 + AO353_06415 0.45 -0.5
1,431,442 + AO353_06415 0.45 -0.6
1,431,466 + AO353_06415 0.49 -1.8
1,431,466 + AO353_06415 0.49 -0.1
1,431,466 + AO353_06415 0.49 -1.5
1,431,639 + AO353_06415 0.78 -1.0
1,431,753 + +0.5
1,431,753 + +1.0
1,431,753 + +0.9
1,431,753 + +0.7
1,431,753 + +0.1
1,431,753 + +0.7
1,431,753 + -0.4
1,431,753 + +0.3
1,431,753 + +0.9
1,431,753 + +0.4
1,431,753 + -1.1
1,431,753 + +0.3
1,431,753 + -0.9
1,431,753 + -0.5
1,431,753 + -1.1
1,431,761 + +2.3
1,431,761 + -0.0
1,431,761 + -1.5
1,431,761 + +1.1
1,431,813 + -1.5
1,431,871 + +0.1

Or see this region's nucleotide sequence