Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04480 and AO353_04485 are separated by 5 nucleotides AO353_04485 and AO353_04490 are separated by 286 nucleotides
AO353_04480: AO353_04480 - NGG1p interacting factor NIF3, at 964,439 to 964,750
_04480
AO353_04485: AO353_04485 - phosphoribosylformylglycinamidine synthase, at 964,756 to 968,652
_04485
AO353_04490: AO353_04490 - murein transglycosylase, at 968,939 to 970,399
_04490
Position (kb) 964
965
966
967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.859 kb on - strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.868 kb on - strand at 963.868 kb on - strand at 963.897 kb on + strand at 963.897 kb on + strand at 963.898 kb on - strand at 963.898 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.386 kb on + strand at 964.386 kb on + strand at 964.387 kb on - strand at 964.387 kb on - strand at 964.424 kb on + strand at 964.424 kb on + strand at 964.425 kb on - strand at 964.467 kb on + strand at 964.482 kb on + strand at 964.483 kb on - strand, within AO353_04480 at 964.483 kb on - strand, within AO353_04480 at 964.591 kb on + strand, within AO353_04480 at 964.659 kb on + strand, within AO353_04480 at 964.659 kb on + strand, within AO353_04480 at 964.659 kb on + strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.660 kb on - strand, within AO353_04480 at 964.746 kb on + strand at 964.746 kb on + strand at 964.746 kb on + strand at 964.747 kb on - strand at 964.747 kb on - strand at 964.747 kb on - strand at 964.757 kb on + strand at 964.757 kb on + strand at 964.757 kb on + strand at 964.757 kb on + strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 964.758 kb on - strand at 968.734 kb on - strand at 968.811 kb on - strand at 968.877 kb on + strand at 968.877 kb on + strand at 968.877 kb on + strand at 968.894 kb on - strand at 968.927 kb on + strand at 968.927 kb on + strand at 968.927 kb on + strand at 968.927 kb on + strand at 968.927 kb on + strand at 968.928 kb on - strand at 968.928 kb on - strand at 968.928 kb on - strand at 968.929 kb on + strand at 968.929 kb on + strand at 969.025 kb on + strand at 969.026 kb on - strand at 969.026 kb on - strand at 969.026 kb on - strand at 969.094 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.098 kb on + strand, within AO353_04490 at 969.099 kb on - strand, within AO353_04490 at 969.099 kb on - strand, within AO353_04490 at 969.134 kb on + strand, within AO353_04490 at 969.134 kb on + strand, within AO353_04490 at 969.135 kb on - strand, within AO353_04490 at 969.308 kb on + strand, within AO353_04490 at 969.308 kb on + strand, within AO353_04490 at 969.308 kb on + strand, within AO353_04490 at 969.308 kb on + strand, within AO353_04490 at 969.309 kb on - strand, within AO353_04490 at 969.335 kb on + strand, within AO353_04490 at 969.335 kb on + strand, within AO353_04490 at 969.335 kb on + strand, within AO353_04490 at 969.335 kb on + strand, within AO353_04490 at 969.336 kb on - strand, within AO353_04490 at 969.336 kb on - strand, within AO353_04490 at 969.446 kb on + strand, within AO353_04490 at 969.446 kb on + strand, within AO353_04490 at 969.447 kb on - strand, within AO353_04490 at 969.447 kb on - strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.569 kb on + strand, within AO353_04490 at 969.570 kb on - strand, within AO353_04490 at 969.570 kb on - strand, within AO353_04490 at 969.570 kb on - strand, within AO353_04490 at 969.570 kb on - strand, within AO353_04490 at 969.577 kb on + strand, within AO353_04490 at 969.577 kb on + strand, within AO353_04490 at 969.577 kb on + strand, within AO353_04490
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 963,858 + -1.7 963,858 + +0.3 963,858 + +0.7 963,858 + -1.1 963,858 + -0.6 963,859 - +0.8 963,867 + -0.2 963,867 + -0.2 963,867 + -0.9 963,867 + +0.1 963,868 - -1.0 963,868 - +0.1 963,897 + -1.4 963,897 + -1.2 963,898 - +0.1 963,898 - +0.4 964,293 - -0.3 964,293 - -0.6 964,293 - -1.1 964,293 - -0.4 964,293 - -0.1 964,293 - -0.8 964,293 - +0.7 964,293 - +0.0 964,293 - +1.7 964,293 - -0.2 964,293 - +0.6 964,293 - -1.2 964,386 + -0.4 964,386 + +1.3 964,387 - -0.7 964,387 - +1.1 964,424 + +0.8 964,424 + -0.1 964,425 - -0.6 964,467 + -1.8 964,482 + +1.7 964,483 - AO353_04480 0.14 -0.2 964,483 - AO353_04480 0.14 +1.1 964,591 + AO353_04480 0.49 +0.3 964,659 + AO353_04480 0.71 +0.5 964,659 + AO353_04480 0.71 +0.9 964,659 + AO353_04480 0.71 -0.0 964,660 - AO353_04480 0.71 -0.3 964,660 - AO353_04480 0.71 -1.6 964,660 - AO353_04480 0.71 -0.2 964,660 - AO353_04480 0.71 +0.7 964,660 - AO353_04480 0.71 +1.5 964,660 - AO353_04480 0.71 +0.0 964,660 - AO353_04480 0.71 +1.2 964,746 + -0.6 964,746 + +0.6 964,746 + +0.3 964,747 - +0.3 964,747 - -0.1 964,747 - +0.2 964,757 + +0.7 964,757 + +0.3 964,757 + +1.2 964,757 + +1.2 964,758 - +0.6 964,758 - +0.3 964,758 - -0.2 964,758 - -1.0 964,758 - -0.1 964,758 - +0.5 964,758 - -1.2 964,758 - -1.2 964,758 - +0.8 964,758 - +1.9 964,758 - +0.4 968,734 - +1.7 968,811 - +0.6 968,877 + -0.4 968,877 + -0.4 968,877 + -0.5 968,894 - -1.3 968,927 + +0.7 968,927 + -1.8 968,927 + -0.2 968,927 + +0.7 968,927 + -1.8 968,928 - -1.0 968,928 - +2.0 968,928 - +0.1 968,929 + -1.2 968,929 + -0.4 969,025 + -2.0 969,026 - -2.8 969,026 - +0.3 969,026 - -2.0 969,094 + AO353_04490 0.11 -2.3 969,098 + AO353_04490 0.11 -0.9 969,098 + AO353_04490 0.11 -1.5 969,098 + AO353_04490 0.11 +0.4 969,098 + AO353_04490 0.11 -2.5 969,098 + AO353_04490 0.11 +1.1 969,098 + AO353_04490 0.11 -1.3 969,098 + AO353_04490 0.11 -2.3 969,099 - AO353_04490 0.11 -1.2 969,099 - AO353_04490 0.11 -1.2 969,134 + AO353_04490 0.13 -1.5 969,134 + AO353_04490 0.13 -0.9 969,135 - AO353_04490 0.13 -0.3 969,308 + AO353_04490 0.25 -0.6 969,308 + AO353_04490 0.25 +1.1 969,308 + AO353_04490 0.25 -1.3 969,308 + AO353_04490 0.25 +0.1 969,309 - AO353_04490 0.25 -2.1 969,335 + AO353_04490 0.27 -1.3 969,335 + AO353_04490 0.27 -0.9 969,335 + AO353_04490 0.27 -1.5 969,335 + AO353_04490 0.27 -1.8 969,336 - AO353_04490 0.27 +0.7 969,336 - AO353_04490 0.27 +0.7 969,446 + AO353_04490 0.35 -2.1 969,446 + AO353_04490 0.35 +0.5 969,447 - AO353_04490 0.35 -1.7 969,447 - AO353_04490 0.35 -0.3 969,569 + AO353_04490 0.43 -0.4 969,569 + AO353_04490 0.43 -0.2 969,569 + AO353_04490 0.43 -0.6 969,569 + AO353_04490 0.43 -0.5 969,569 + AO353_04490 0.43 -0.4 969,570 - AO353_04490 0.43 -0.6 969,570 - AO353_04490 0.43 -0.9 969,570 - AO353_04490 0.43 -1.0 969,570 - AO353_04490 0.43 -0.5 969,577 + AO353_04490 0.44 +0.1 969,577 + AO353_04490 0.44 -1.6 969,577 + AO353_04490 0.44 -0.3
Or see this region's nucleotide sequence