Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04465 and AO353_04470 are separated by 240 nucleotides AO353_04470 and AO353_04475 are separated by 190 nucleotides
AO353_04465: AO353_04465 - N-acetylglucosamine-specific PTS system, IIBC components (nagE) <small>(from data)</small>, at 960,687 to 962,402
_04465
AO353_04470: AO353_04470 - hypothetical protein, at 962,643 to 962,942
_04470
AO353_04475: AO353_04475 - hypothetical protein, at 963,133 to 963,522
_04475
Position (kb) 962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 961.737 kb on + strand, within AO353_04465 at 961.737 kb on + strand, within AO353_04465 at 961.737 kb on + strand, within AO353_04465 at 961.737 kb on + strand, within AO353_04465 at 961.737 kb on + strand, within AO353_04465 at 961.737 kb on + strand, within AO353_04465 at 961.737 kb on + strand, within AO353_04465 at 961.738 kb on - strand, within AO353_04465 at 961.738 kb on - strand, within AO353_04465 at 961.738 kb on - strand, within AO353_04465 at 961.738 kb on - strand, within AO353_04465 at 961.738 kb on - strand, within AO353_04465 at 961.738 kb on - strand, within AO353_04465 at 961.740 kb on + strand, within AO353_04465 at 961.740 kb on + strand, within AO353_04465 at 961.740 kb on + strand, within AO353_04465 at 961.740 kb on + strand, within AO353_04465 at 961.740 kb on + strand, within AO353_04465 at 961.741 kb on - strand, within AO353_04465 at 961.741 kb on - strand, within AO353_04465 at 961.741 kb on - strand, within AO353_04465 at 961.741 kb on - strand, within AO353_04465 at 961.741 kb on - strand, within AO353_04465 at 961.741 kb on - strand, within AO353_04465 at 961.760 kb on + strand, within AO353_04465 at 961.852 kb on - strand, within AO353_04465 at 961.852 kb on - strand, within AO353_04465 at 961.852 kb on - strand, within AO353_04465 at 962.015 kb on - strand, within AO353_04465 at 962.098 kb on + strand, within AO353_04465 at 962.098 kb on + strand, within AO353_04465 at 962.163 kb on - strand, within AO353_04465 at 962.244 kb on - strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.566 kb on - strand at 962.566 kb on - strand at 962.644 kb on + strand at 962.644 kb on + strand at 962.644 kb on + strand at 962.644 kb on + strand at 962.644 kb on + strand at 962.645 kb on - strand at 962.645 kb on - strand at 962.645 kb on - strand at 962.645 kb on - strand at 962.648 kb on + strand at 962.648 kb on + strand at 962.648 kb on + strand at 962.649 kb on - strand at 962.675 kb on + strand, within AO353_04470 at 962.676 kb on - strand, within AO353_04470 at 962.676 kb on - strand, within AO353_04470 at 962.676 kb on - strand, within AO353_04470 at 962.699 kb on + strand, within AO353_04470 at 962.700 kb on - strand, within AO353_04470 at 962.700 kb on - strand, within AO353_04470 at 962.700 kb on - strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.801 kb on - strand, within AO353_04470 at 962.801 kb on - strand, within AO353_04470 at 962.801 kb on - strand, within AO353_04470 at 962.801 kb on - strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.842 kb on - strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.906 kb on + strand, within AO353_04470 at 962.906 kb on + strand, within AO353_04470 at 962.906 kb on + strand, within AO353_04470 at 962.907 kb on - strand at 962.907 kb on - strand, within AO353_04470 at 962.907 kb on - strand, within AO353_04470 at 962.980 kb on - strand at 963.007 kb on + strand at 963.007 kb on + strand at 963.007 kb on + strand at 963.007 kb on + strand at 963.008 kb on - strand at 963.008 kb on - strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.026 kb on + strand at 963.026 kb on + strand at 963.026 kb on + strand at 963.026 kb on + strand at 963.027 kb on - strand at 963.027 kb on - strand at 963.027 kb on - strand at 963.027 kb on - strand at 963.072 kb on - strand at 963.072 kb on - strand at 963.123 kb on + strand at 963.123 kb on + strand at 963.123 kb on + strand at 963.124 kb on - strand at 963.126 kb on + strand at 963.127 kb on - strand at 963.127 kb on - strand at 963.127 kb on - strand at 963.127 kb on - strand at 963.127 kb on - strand at 963.134 kb on + strand at 963.134 kb on + strand at 963.134 kb on + strand at 963.135 kb on - strand at 963.135 kb on - strand at 963.147 kb on - strand at 963.147 kb on - strand at 963.147 kb on - strand at 963.147 kb on - strand at 963.147 kb on - strand at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.174 kb on - strand, within AO353_04475 at 963.174 kb on - strand, within AO353_04475 at 963.416 kb on + strand, within AO353_04475 at 963.534 kb on + strand at 963.534 kb on + strand at 963.535 kb on - strand at 963.535 kb on - strand at 963.535 kb on - strand at 963.535 kb on - strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.551 kb on - strand at 963.551 kb on - strand at 963.551 kb on - strand at 963.585 kb on + strand at 963.585 kb on + strand at 963.585 kb on + strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.611 kb on + strand at 963.612 kb on - strand at 963.612 kb on - strand at 963.654 kb on + strand at 963.654 kb on + strand at 963.654 kb on + strand at 963.655 kb on - strand at 963.655 kb on - strand at 963.687 kb on - strand at 963.687 kb on - strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.709 kb on - strand at 963.709 kb on - strand at 963.717 kb on - strand at 963.717 kb on - strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.859 kb on - strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.868 kb on - strand at 963.868 kb on - strand at 963.897 kb on + strand at 963.897 kb on + strand at 963.898 kb on - strand at 963.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 961,737 + AO353_04465 0.61 -1.2 961,737 + AO353_04465 0.61 +0.5 961,737 + AO353_04465 0.61 +0.1 961,737 + AO353_04465 0.61 -0.1 961,737 + AO353_04465 0.61 -0.6 961,737 + AO353_04465 0.61 -1.9 961,737 + AO353_04465 0.61 +0.5 961,738 - AO353_04465 0.61 -2.2 961,738 - AO353_04465 0.61 -0.4 961,738 - AO353_04465 0.61 +1.1 961,738 - AO353_04465 0.61 -0.3 961,738 - AO353_04465 0.61 -0.5 961,738 - AO353_04465 0.61 +1.6 961,740 + AO353_04465 0.61 -0.4 961,740 + AO353_04465 0.61 +1.1 961,740 + AO353_04465 0.61 -0.9 961,740 + AO353_04465 0.61 +0.3 961,740 + AO353_04465 0.61 -0.2 961,741 - AO353_04465 0.61 +0.4 961,741 - AO353_04465 0.61 -0.9 961,741 - AO353_04465 0.61 +0.5 961,741 - AO353_04465 0.61 +0.5 961,741 - AO353_04465 0.61 -0.6 961,741 - AO353_04465 0.61 +0.9 961,760 + AO353_04465 0.63 -1.9 961,852 - AO353_04465 0.68 -2.8 961,852 - AO353_04465 0.68 +0.4 961,852 - AO353_04465 0.68 -0.0 962,015 - AO353_04465 0.77 +0.4 962,098 + AO353_04465 0.82 -0.4 962,098 + AO353_04465 0.82 -0.9 962,163 - AO353_04465 0.86 -0.9 962,244 - +0.5 962,565 + +0.5 962,565 + -0.2 962,565 + -0.7 962,565 + -0.1 962,565 + +0.7 962,565 + +0.0 962,566 - +0.1 962,566 - +1.7 962,644 + +0.1 962,644 + +0.2 962,644 + -0.2 962,644 + +0.8 962,644 + +0.7 962,645 - -0.7 962,645 - -0.3 962,645 - +1.2 962,645 - -0.1 962,648 + +1.1 962,648 + -1.2 962,648 + +0.2 962,649 - +1.4 962,675 + AO353_04470 0.11 +0.0 962,676 - AO353_04470 0.11 -0.1 962,676 - AO353_04470 0.11 +0.7 962,676 - AO353_04470 0.11 +0.6 962,699 + AO353_04470 0.19 +0.2 962,700 - AO353_04470 0.19 -0.4 962,700 - AO353_04470 0.19 -0.0 962,700 - AO353_04470 0.19 -0.3 962,789 + AO353_04470 0.49 -0.6 962,789 + AO353_04470 0.49 +0.5 962,789 + AO353_04470 0.49 -0.1 962,789 + AO353_04470 0.49 +0.6 962,789 + AO353_04470 0.49 -0.8 962,790 - AO353_04470 0.49 -1.1 962,790 - AO353_04470 0.49 -0.6 962,790 - AO353_04470 0.49 +0.4 962,790 - AO353_04470 0.49 -1.8 962,790 - AO353_04470 0.49 -0.3 962,790 - AO353_04470 0.49 -1.7 962,790 - AO353_04470 0.49 +0.3 962,790 - AO353_04470 0.49 +0.4 962,800 + AO353_04470 0.52 +0.8 962,800 + AO353_04470 0.52 +0.1 962,800 + AO353_04470 0.52 +0.7 962,800 + AO353_04470 0.52 -0.0 962,800 + AO353_04470 0.52 +0.1 962,801 - AO353_04470 0.53 +0.1 962,801 - AO353_04470 0.53 -0.8 962,801 - AO353_04470 0.53 -0.3 962,801 - AO353_04470 0.53 +0.7 962,831 + AO353_04470 0.63 -0.8 962,831 + AO353_04470 0.63 +0.5 962,831 + AO353_04470 0.63 +0.0 962,831 + AO353_04470 0.63 +2.3 962,831 + AO353_04470 0.63 -0.3 962,831 + AO353_04470 0.63 -0.2 962,831 + AO353_04470 0.63 -0.7 962,831 + AO353_04470 0.63 -0.6 962,831 + AO353_04470 0.63 -0.5 962,831 + AO353_04470 0.63 +1.1 962,831 + AO353_04470 0.63 -0.7 962,831 + AO353_04470 0.63 -0.2 962,831 + AO353_04470 0.63 -0.8 962,832 - AO353_04470 0.63 -1.0 962,832 - AO353_04470 0.63 -1.3 962,832 - AO353_04470 0.63 +0.1 962,832 - AO353_04470 0.63 +0.5 962,832 - AO353_04470 0.63 -0.6 962,832 - AO353_04470 0.63 +0.3 962,841 + AO353_04470 0.66 -0.5 962,841 + AO353_04470 0.66 +0.0 962,841 + AO353_04470 0.66 -1.1 962,841 + AO353_04470 0.66 -0.8 962,841 + AO353_04470 0.66 -0.7 962,842 - AO353_04470 0.66 -0.8 962,844 + AO353_04470 0.67 +0.1 962,844 + AO353_04470 0.67 -0.5 962,844 + AO353_04470 0.67 -1.4 962,844 + AO353_04470 0.67 -1.0 962,844 + AO353_04470 0.67 +2.1 962,844 + AO353_04470 0.67 +2.9 962,844 + AO353_04470 0.67 +1.3 962,845 - AO353_04470 0.67 -0.0 962,845 - AO353_04470 0.67 +0.6 962,845 - AO353_04470 0.67 +0.3 962,845 - AO353_04470 0.67 +0.3 962,845 - AO353_04470 0.67 -0.3 962,906 + AO353_04470 0.88 -0.7 962,906 + AO353_04470 0.88 -0.3 962,906 + AO353_04470 0.88 +1.5 962,907 - +1.7 962,907 - AO353_04470 0.88 +1.1 962,907 - AO353_04470 0.88 +0.9 962,980 - +0.8 963,007 + +1.2 963,007 + +0.4 963,007 + -0.1 963,007 + -0.5 963,008 - -0.9 963,008 - +0.2 963,015 + -1.2 963,015 + +0.7 963,015 + +1.7 963,015 + -0.3 963,015 + +0.1 963,015 + +2.3 963,015 + -0.9 963,015 + -0.5 963,016 - -0.0 963,016 - -0.3 963,016 - -0.5 963,016 - +0.3 963,016 - -0.2 963,016 - -0.7 963,016 - -0.6 963,016 - -0.8 963,016 - -2.2 963,016 - -0.1 963,026 + +1.7 963,026 + +0.2 963,026 + -0.6 963,026 + -0.1 963,027 - +1.7 963,027 - +0.7 963,027 - +2.7 963,027 - -1.4 963,072 - -0.2 963,072 - -0.5 963,123 + -1.9 963,123 + -0.1 963,123 + -1.1 963,124 - -1.2 963,126 + -2.1 963,127 - -0.9 963,127 - -0.7 963,127 - -0.7 963,127 - -0.9 963,127 - +1.7 963,134 + -0.2 963,134 + +0.7 963,134 + +1.4 963,135 - +0.3 963,135 - -1.8 963,147 - +1.1 963,147 - +1.7 963,147 - +0.9 963,147 - -0.3 963,147 - +1.2 963,173 + AO353_04475 0.10 -0.8 963,173 + AO353_04475 0.10 +0.4 963,173 + AO353_04475 0.10 +0.4 963,173 + AO353_04475 0.10 -0.9 963,173 + AO353_04475 0.10 -0.7 963,173 + AO353_04475 0.10 -0.7 963,174 - AO353_04475 0.11 -1.3 963,174 - AO353_04475 0.11 +0.7 963,416 + AO353_04475 0.73 -0.3 963,534 + -1.8 963,534 + -0.2 963,535 - +0.3 963,535 - -1.0 963,535 - -0.6 963,535 - -0.7 963,540 + +1.4 963,540 + +0.0 963,540 + -0.6 963,540 + -0.7 963,540 + +0.2 963,540 + -0.1 963,541 - +0.8 963,541 - -0.9 963,541 - +0.0 963,541 - -0.6 963,541 - -0.2 963,541 - -0.3 963,541 - -1.1 963,541 - +0.7 963,541 - -2.5 963,541 - +0.1 963,541 - -2.1 963,551 - +0.5 963,551 - +0.5 963,551 - -0.6 963,585 + -0.4 963,585 + +0.1 963,585 + -0.5 963,586 - +1.1 963,586 - -0.8 963,586 - -1.6 963,586 - -2.0 963,586 - -1.0 963,586 - -1.4 963,611 + +0.8 963,612 - -0.8 963,612 - +1.7 963,654 + +0.1 963,654 + -0.1 963,654 + +1.0 963,655 - -0.3 963,655 - -0.7 963,687 - +0.2 963,687 - -0.2 963,688 + +1.4 963,688 + +1.3 963,688 + -0.6 963,688 + -0.6 963,688 + +0.1 963,688 + -1.3 963,688 + -0.6 963,688 + +0.9 963,688 + +0.1 963,688 + +0.2 963,688 + -0.5 963,688 + -0.7 963,688 + -0.1 963,688 + +0.4 963,688 + +0.2 963,689 - +0.1 963,689 - +0.5 963,689 - +0.7 963,689 - -1.0 963,689 - +0.1 963,689 - +0.9 963,689 - -0.6 963,689 - -0.6 963,689 - -1.0 963,689 - +1.6 963,700 + -1.5 963,700 + -2.1 963,700 + -0.5 963,700 + -1.5 963,700 + +0.7 963,700 + +0.5 963,701 - -1.5 963,701 - +0.4 963,701 - +0.1 963,701 - -0.3 963,701 - -0.1 963,701 - -0.7 963,701 - -0.5 963,701 - -0.2 963,701 - -0.5 963,701 - +0.9 963,709 - +0.3 963,709 - -0.3 963,717 - +1.7 963,717 - -0.8 963,858 + -1.7 963,858 + +0.3 963,858 + +0.7 963,858 + -1.1 963,858 + -0.6 963,859 - +0.8 963,867 + -0.2 963,867 + -0.2 963,867 + -0.9 963,867 + +0.1 963,868 - -1.0 963,868 - +0.1 963,897 + -1.4 963,897 + -1.2 963,898 - +0.1 963,898 - +0.4
Or see this region's nucleotide sequence