Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04360

Experiment: Tetracycline 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04355 and AO353_04360 are separated by 136 nucleotidesAO353_04360 and AO353_04365 are separated by 331 nucleotides AO353_04355: AO353_04355 - homoserine dehydrogenase, at 939,278 to 940,582 _04355 AO353_04360: AO353_04360 - protein-disulfide isomerase, at 940,719 to 941,450 _04360 AO353_04365: AO353_04365 - recombinase XerD, at 941,782 to 942,678 _04365 Position (kb) 940 941 942Strain fitness (log2 ratio) -2 -1 0 1 2at 939.830 kb on - strand, within AO353_04355at 940.358 kb on + strand, within AO353_04355at 940.566 kb on - strandat 940.653 kb on - strandat 940.653 kb on - strandat 940.653 kb on - strandat 940.655 kb on + strandat 940.656 kb on - strandat 940.656 kb on - strandat 940.721 kb on - strandat 940.809 kb on - strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.994 kb on - strand, within AO353_04360at 940.994 kb on - strand, within AO353_04360at 940.994 kb on - strand, within AO353_04360at 941.076 kb on + strand, within AO353_04360at 941.076 kb on + strand, within AO353_04360at 941.077 kb on - strand, within AO353_04360at 941.077 kb on - strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.237 kb on - strand, within AO353_04360at 941.237 kb on - strand, within AO353_04360at 941.237 kb on - strand, within AO353_04360at 941.258 kb on - strand, within AO353_04360at 941.290 kb on + strand, within AO353_04360at 941.291 kb on - strand, within AO353_04360at 941.291 kb on - strand, within AO353_04360at 941.291 kb on - strand, within AO353_04360at 941.316 kb on - strand, within AO353_04360at 941.316 kb on - strand, within AO353_04360at 941.360 kb on + strand, within AO353_04360at 941.360 kb on + strand, within AO353_04360at 941.360 kb on + strand, within AO353_04360at 941.361 kb on - strand, within AO353_04360at 941.372 kb on + strand, within AO353_04360at 941.372 kb on + strand, within AO353_04360at 941.373 kb on - strand, within AO353_04360at 941.483 kb on + strandat 941.483 kb on + strandat 941.484 kb on - strandat 941.484 kb on - strandat 941.542 kb on + strandat 941.542 kb on + strandat 941.542 kb on + strandat 941.549 kb on + strandat 941.549 kb on + strandat 941.549 kb on + strandat 941.549 kb on + strandat 941.550 kb on - strandat 941.550 kb on - strandat 941.550 kb on - strandat 941.550 kb on - strandat 941.587 kb on + strandat 941.588 kb on - strandat 941.843 kb on + strandat 941.843 kb on + strandat 941.843 kb on + strandat 942.178 kb on + strand, within AO353_04365at 942.178 kb on + strand, within AO353_04365at 942.178 kb on + strand, within AO353_04365at 942.179 kb on - strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.248 kb on + strand, within AO353_04365at 942.249 kb on - strand, within AO353_04365at 942.422 kb on + strand, within AO353_04365at 942.422 kb on + strand, within AO353_04365at 942.429 kb on - strand, within AO353_04365at 942.429 kb on - strand, within AO353_04365

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
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939,830 - AO353_04355 0.42 -0.2
940,358 + AO353_04355 0.83 -0.3
940,566 - -0.3
940,653 - -1.0
940,653 - -2.2
940,653 - -0.8
940,655 + -0.3
940,656 - +0.6
940,656 - -0.3
940,721 - +0.1
940,809 - AO353_04360 0.12 +0.7
940,993 + AO353_04360 0.37 +0.3
940,993 + AO353_04360 0.37 -1.7
940,993 + AO353_04360 0.37 -0.8
940,993 + AO353_04360 0.37 -1.8
940,994 - AO353_04360 0.38 -0.9
940,994 - AO353_04360 0.38 +0.0
940,994 - AO353_04360 0.38 -1.1
941,076 + AO353_04360 0.49 -0.9
941,076 + AO353_04360 0.49 -1.5
941,077 - AO353_04360 0.49 +0.5
941,077 - AO353_04360 0.49 -1.2
941,221 + AO353_04360 0.69 -0.6
941,221 + AO353_04360 0.69 -0.6
941,221 + AO353_04360 0.69 -0.6
941,221 + AO353_04360 0.69 +0.1
941,221 + AO353_04360 0.69 -1.9
941,222 - AO353_04360 0.69 +0.2
941,222 - AO353_04360 0.69 +2.1
941,222 - AO353_04360 0.69 -1.2
941,222 - AO353_04360 0.69 +0.0
941,236 + AO353_04360 0.71 -0.6
941,236 + AO353_04360 0.71 +0.4
941,236 + AO353_04360 0.71 -0.9
941,236 + AO353_04360 0.71 -0.7
941,236 + AO353_04360 0.71 +0.4
941,236 + AO353_04360 0.71 -1.2
941,237 - AO353_04360 0.71 +0.4
941,237 - AO353_04360 0.71 +0.3
941,237 - AO353_04360 0.71 -1.1
941,258 - AO353_04360 0.74 -1.7
941,290 + AO353_04360 0.78 -0.6
941,291 - AO353_04360 0.78 +0.1
941,291 - AO353_04360 0.78 +0.4
941,291 - AO353_04360 0.78 -0.9
941,316 - AO353_04360 0.82 -0.2
941,316 - AO353_04360 0.82 -0.6
941,360 + AO353_04360 0.88 -0.5
941,360 + AO353_04360 0.88 -1.7
941,360 + AO353_04360 0.88 -1.3
941,361 - AO353_04360 0.88 -1.1
941,372 + AO353_04360 0.89 +0.2
941,372 + AO353_04360 0.89 -1.4
941,373 - AO353_04360 0.89 -0.6
941,483 + +0.2
941,483 + -1.5
941,484 - -1.6
941,484 - -1.0
941,542 + -0.8
941,542 + -0.6
941,542 + -0.6
941,549 + -0.1
941,549 + +0.7
941,549 + -0.1
941,549 + +0.2
941,550 - -0.5
941,550 - -0.9
941,550 - -0.6
941,550 - -0.1
941,587 + +1.4
941,588 - -2.1
941,843 + +0.3
941,843 + -2.3
941,843 + -1.8
942,178 + AO353_04365 0.44 +0.4
942,178 + AO353_04365 0.44 -2.2
942,178 + AO353_04365 0.44 +0.4
942,179 - AO353_04365 0.44 +0.3
942,248 + AO353_04365 0.52 -1.9
942,248 + AO353_04365 0.52 -0.6
942,248 + AO353_04365 0.52 +0.1
942,248 + AO353_04365 0.52 -1.1
942,248 + AO353_04365 0.52 -1.5
942,249 - AO353_04365 0.52 -0.5
942,422 + AO353_04365 0.71 +0.5
942,422 + AO353_04365 0.71 -1.7
942,429 - AO353_04365 0.72 -1.5
942,429 - AO353_04365 0.72 -2.3

Or see this region's nucleotide sequence