Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03585 and AO353_03590 are separated by 118 nucleotides AO353_03590 and AO353_03595 are separated by 203 nucleotides AO353_03595 and AO353_03600 are separated by 129 nucleotides
AO353_03585: AO353_03585 - ATP-dependent DNA helicase RuvA, at 765,934 to 766,542
_03585
AO353_03590: AO353_03590 - crossover junction endodeoxyribonuclease RuvC, at 766,661 to 767,185
_03590
AO353_03595: AO353_03595 - hypothetical protein, at 767,389 to 768,135
_03595
AO353_03600: AO353_03600 - aspartate--tRNA(Asp/Asn) ligase, at 768,265 to 770,040
_03600
Position (kb) 767
768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.480 kb on + strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.481 kb on - strand, within AO353_03585 at 766.583 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.654 kb on + strand at 766.655 kb on - strand at 766.831 kb on + strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590 at 766.882 kb on - strand, within AO353_03590 at 767.080 kb on + strand, within AO353_03590 at 767.103 kb on + strand, within AO353_03590 at 767.103 kb on + strand, within AO353_03590 at 767.104 kb on - strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.129 kb on + strand, within AO353_03590 at 767.177 kb on + strand at 767.178 kb on - strand at 767.186 kb on - strand at 767.201 kb on - strand at 767.296 kb on + strand at 767.297 kb on - strand at 767.435 kb on + strand at 767.435 kb on + strand at 767.584 kb on - strand, within AO353_03595 at 767.595 kb on - strand, within AO353_03595 at 767.742 kb on - strand, within AO353_03595 at 767.742 kb on - strand, within AO353_03595 at 767.742 kb on - strand, within AO353_03595 at 767.876 kb on + strand, within AO353_03595 at 767.876 kb on + strand, within AO353_03595 at 767.876 kb on + strand, within AO353_03595 at 767.877 kb on - strand, within AO353_03595 at 767.877 kb on - strand, within AO353_03595 at 767.877 kb on - strand, within AO353_03595 at 768.135 kb on + strand at 768.135 kb on + strand at 768.135 kb on + strand at 768.135 kb on + strand at 768.156 kb on + strand at 768.157 kb on - strand at 768.170 kb on - strand at 768.171 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 766,480 + AO353_03585 0.90 -1.2 766,480 + AO353_03585 0.90 -1.2 766,480 + AO353_03585 0.90 -0.7 766,480 + AO353_03585 0.90 -1.4 766,481 - AO353_03585 0.90 -1.3 766,481 - AO353_03585 0.90 -1.5 766,481 - AO353_03585 0.90 -2.3 766,583 + -1.2 766,654 + -0.9 766,654 + -0.8 766,654 + +0.1 766,655 - +0.5 766,831 + AO353_03590 0.32 -1.9 766,882 - AO353_03590 0.42 -1.2 766,882 - AO353_03590 0.42 -0.7 767,080 + AO353_03590 0.80 -1.8 767,103 + AO353_03590 0.84 -2.2 767,103 + AO353_03590 0.84 +1.6 767,104 - AO353_03590 0.84 -0.7 767,129 + AO353_03590 0.89 -0.4 767,129 + AO353_03590 0.89 +0.1 767,129 + AO353_03590 0.89 -2.8 767,129 + AO353_03590 0.89 -0.5 767,177 + +0.6 767,178 - +0.4 767,186 - +0.3 767,201 - +0.1 767,296 + +1.4 767,297 - -1.2 767,435 + -0.4 767,435 + -1.2 767,584 - AO353_03595 0.26 -2.1 767,595 - AO353_03595 0.28 -2.1 767,742 - AO353_03595 0.47 -1.8 767,742 - AO353_03595 0.47 -1.0 767,742 - AO353_03595 0.47 -1.4 767,876 + AO353_03595 0.65 -1.2 767,876 + AO353_03595 0.65 -0.9 767,876 + AO353_03595 0.65 +0.6 767,877 - AO353_03595 0.65 -2.5 767,877 - AO353_03595 0.65 -0.5 767,877 - AO353_03595 0.65 -0.9 768,135 + +0.1 768,135 + -2.1 768,135 + -0.9 768,135 + -1.5 768,156 + -1.5 768,157 - -1.2 768,170 - -0.1 768,171 + -0.4
Or see this region's nucleotide sequence