Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03490 and AO353_03495 are separated by 495 nucleotides AO353_03495 and AO353_03500 are separated by 9 nucleotides AO353_03500 and AO353_03505 are separated by 185 nucleotides
AO353_03490: AO353_03490 - Fis family transcriptional regulator, at 745,839 to 747,347
_03490
AO353_03495: AO353_03495 - glycine cleavage system protein H, at 747,843 to 748,226
_03495
AO353_03500: AO353_03500 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) <small>(from data)</small>, at 748,236 to 751,088
_03500
AO353_03505: AO353_03505 - serine dehydratase, at 751,274 to 752,650
_03505
Position (kb) 748
749
750
751
752 Strain fitness (log2 ratio) -2
-1
0
1
2 at 747.243 kb on + strand at 747.244 kb on - strand at 747.244 kb on - strand at 747.252 kb on + strand at 747.252 kb on + strand at 747.252 kb on + strand at 747.252 kb on + strand at 747.252 kb on + strand at 747.253 kb on - strand at 747.253 kb on - strand at 747.324 kb on + strand at 747.324 kb on + strand at 747.325 kb on - strand at 747.418 kb on + strand at 747.437 kb on + strand at 747.437 kb on + strand at 747.437 kb on + strand at 747.437 kb on + strand at 747.438 kb on - strand at 747.438 kb on - strand at 747.438 kb on - strand at 747.438 kb on - strand at 747.600 kb on - strand at 747.631 kb on - strand at 747.668 kb on + strand at 747.710 kb on - strand at 747.751 kb on + strand at 747.752 kb on - strand at 747.752 kb on - strand at 747.832 kb on + strand at 747.833 kb on - strand at 747.833 kb on - strand at 747.861 kb on - strand at 747.958 kb on + strand, within AO353_03495 at 747.959 kb on - strand, within AO353_03495 at 747.981 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.192 kb on - strand at 748.246 kb on + strand at 748.246 kb on + strand at 748.246 kb on + strand at 748.246 kb on + strand at 748.246 kb on + strand at 748.247 kb on - strand at 748.247 kb on - strand at 748.247 kb on - strand at 748.247 kb on - strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.253 kb on - strand at 748.479 kb on + strand at 748.479 kb on + strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.494 kb on + strand at 748.494 kb on + strand at 748.494 kb on + strand at 748.495 kb on - strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.508 kb on + strand at 748.554 kb on + strand, within AO353_03500 at 748.554 kb on + strand, within AO353_03500 at 748.554 kb on + strand, within AO353_03500 at 748.555 kb on - strand, within AO353_03500 at 748.555 kb on - strand, within AO353_03500 at 748.563 kb on + strand, within AO353_03500 at 748.563 kb on + strand, within AO353_03500 at 748.564 kb on - strand, within AO353_03500 at 749.085 kb on + strand, within AO353_03500 at 749.085 kb on + strand, within AO353_03500 at 749.085 kb on + strand, within AO353_03500 at 749.086 kb on - strand, within AO353_03500 at 749.086 kb on - strand, within AO353_03500 at 749.086 kb on - strand, within AO353_03500 at 749.086 kb on - strand, within AO353_03500 at 749.201 kb on + strand, within AO353_03500 at 749.202 kb on - strand, within AO353_03500 at 749.202 kb on - strand, within AO353_03500 at 749.202 kb on - strand, within AO353_03500 at 749.249 kb on - strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.280 kb on + strand, within AO353_03500 at 749.291 kb on + strand, within AO353_03500 at 749.695 kb on - strand, within AO353_03500 at 749.952 kb on + strand, within AO353_03500 at 750.180 kb on + strand, within AO353_03500 at 750.180 kb on + strand, within AO353_03500 at 750.180 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.259 kb on - strand, within AO353_03500 at 750.259 kb on - strand, within AO353_03500 at 750.259 kb on - strand, within AO353_03500 at 750.259 kb on - strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.607 kb on - strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.619 kb on - strand, within AO353_03500 at 750.952 kb on - strand at 750.973 kb on - strand at 751.002 kb on + strand at 751.002 kb on + strand at 751.002 kb on + strand at 751.003 kb on - strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.081 kb on - strand at 751.081 kb on - strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.146 kb on + strand at 751.146 kb on + strand at 751.147 kb on - strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.251 kb on + strand at 751.252 kb on - strand at 751.252 kb on - strand at 751.281 kb on + strand at 751.638 kb on - strand, within AO353_03505 at 751.703 kb on + strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.833 kb on - strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 747,243 + -0.8 747,244 - -0.2 747,244 - +0.6 747,252 + -1.4 747,252 + -0.7 747,252 + +0.5 747,252 + +1.9 747,252 + +0.9 747,253 - -0.8 747,253 - +1.2 747,324 + +0.5 747,324 + -1.5 747,325 - -0.7 747,418 + +0.2 747,437 + -2.2 747,437 + -2.2 747,437 + -0.9 747,437 + +0.0 747,438 - -0.0 747,438 - +0.6 747,438 - -0.6 747,438 - -0.2 747,600 - +0.2 747,631 - +1.0 747,668 + -0.5 747,710 - +0.2 747,751 + +0.8 747,752 - -1.7 747,752 - +0.9 747,832 + -0.8 747,833 - +1.3 747,833 - +0.0 747,861 - +0.4 747,958 + AO353_03495 0.30 +0.6 747,959 - AO353_03495 0.30 +1.2 747,981 + AO353_03495 0.36 -0.4 748,038 + AO353_03495 0.51 -0.4 748,038 + AO353_03495 0.51 -0.9 748,038 + AO353_03495 0.51 -0.4 748,038 + AO353_03495 0.51 -1.2 748,038 + AO353_03495 0.51 +0.0 748,039 - AO353_03495 0.51 +0.3 748,039 - AO353_03495 0.51 -1.1 748,039 - AO353_03495 0.51 -2.5 748,039 - AO353_03495 0.51 +0.4 748,039 - AO353_03495 0.51 +0.4 748,039 - AO353_03495 0.51 +0.5 748,039 - AO353_03495 0.51 +0.3 748,192 - +0.4 748,246 + +0.5 748,246 + +1.0 748,246 + +1.6 748,246 + -2.2 748,246 + -0.2 748,247 - +1.6 748,247 - -0.7 748,247 - +2.6 748,247 - -0.7 748,252 + +0.0 748,252 + -0.7 748,252 + -0.7 748,252 + -2.1 748,252 + +0.5 748,252 + -0.7 748,253 - -0.4 748,479 + -0.6 748,479 + +1.5 748,480 - -0.3 748,480 - +0.6 748,480 - +1.3 748,480 - -0.8 748,480 - -0.2 748,480 - -0.6 748,480 - -1.2 748,480 - +1.2 748,494 + +1.9 748,494 + -0.4 748,494 + -1.2 748,495 - -0.8 748,497 + -0.4 748,497 + +0.5 748,497 + -0.4 748,497 + +0.5 748,497 + -0.1 748,497 + +0.5 748,497 + -0.8 748,498 - -0.7 748,498 - +0.2 748,498 - +0.4 748,498 - -0.1 748,498 - -0.1 748,498 - +0.9 748,498 - +1.5 748,508 + +0.7 748,554 + AO353_03500 0.11 -1.0 748,554 + AO353_03500 0.11 -1.0 748,554 + AO353_03500 0.11 -0.4 748,555 - AO353_03500 0.11 +0.0 748,555 - AO353_03500 0.11 +0.3 748,563 + AO353_03500 0.11 +0.1 748,563 + AO353_03500 0.11 -0.3 748,564 - AO353_03500 0.11 +0.5 749,085 + AO353_03500 0.30 -0.4 749,085 + AO353_03500 0.30 +1.0 749,085 + AO353_03500 0.30 +0.1 749,086 - AO353_03500 0.30 +0.7 749,086 - AO353_03500 0.30 -0.2 749,086 - AO353_03500 0.30 -0.1 749,086 - AO353_03500 0.30 -0.4 749,201 + AO353_03500 0.34 +1.6 749,202 - AO353_03500 0.34 -0.0 749,202 - AO353_03500 0.34 +0.2 749,202 - AO353_03500 0.34 +0.2 749,249 - AO353_03500 0.36 +0.3 749,271 + AO353_03500 0.36 -0.4 749,271 + AO353_03500 0.36 -0.4 749,271 + AO353_03500 0.36 +1.3 749,271 + AO353_03500 0.36 +0.5 749,271 + AO353_03500 0.36 +1.0 749,272 - AO353_03500 0.36 -0.1 749,272 - AO353_03500 0.36 +1.1 749,272 - AO353_03500 0.36 -1.7 749,272 - AO353_03500 0.36 -1.7 749,272 - AO353_03500 0.36 +0.6 749,272 - -0.7 749,272 - AO353_03500 0.36 +0.9 749,272 - AO353_03500 0.36 +1.2 749,280 + AO353_03500 0.37 -0.4 749,291 + AO353_03500 0.37 +1.3 749,695 - AO353_03500 0.51 -0.4 749,952 + AO353_03500 0.60 -0.6 750,180 + AO353_03500 0.68 -0.3 750,180 + AO353_03500 0.68 +1.4 750,180 + AO353_03500 0.68 +1.0 750,258 + AO353_03500 0.71 -0.7 750,258 + AO353_03500 0.71 +0.6 750,258 + AO353_03500 0.71 +0.7 750,258 + AO353_03500 0.71 -1.0 750,258 + AO353_03500 0.71 -0.5 750,258 + AO353_03500 0.71 +0.6 750,258 + AO353_03500 0.71 -0.4 750,258 + AO353_03500 0.71 -0.4 750,258 + AO353_03500 0.71 -0.0 750,258 + AO353_03500 0.71 +0.4 750,258 + AO353_03500 0.71 +0.9 750,258 + AO353_03500 0.71 -0.0 750,258 + AO353_03500 0.71 +1.3 750,258 + AO353_03500 0.71 +0.5 750,259 - AO353_03500 0.71 +0.5 750,259 - AO353_03500 0.71 -1.2 750,259 - AO353_03500 0.71 +0.5 750,259 - AO353_03500 0.71 +0.0 750,513 + AO353_03500 0.80 +0.6 750,513 + AO353_03500 0.80 -1.5 750,513 + AO353_03500 0.80 +0.9 750,513 + AO353_03500 0.80 -1.0 750,513 + AO353_03500 0.80 -0.3 750,513 + AO353_03500 0.80 -0.5 750,513 + AO353_03500 0.80 -1.5 750,514 - AO353_03500 0.80 +2.1 750,514 - AO353_03500 0.80 +0.2 750,514 - AO353_03500 0.80 -0.8 750,514 - AO353_03500 0.80 +0.0 750,514 - AO353_03500 0.80 -0.5 750,514 - AO353_03500 0.80 +1.1 750,514 - AO353_03500 0.80 +0.4 750,579 + AO353_03500 0.82 -0.8 750,579 + AO353_03500 0.82 +0.2 750,579 + AO353_03500 0.82 -0.3 750,579 + AO353_03500 0.82 +0.9 750,579 + AO353_03500 0.82 -0.7 750,580 - AO353_03500 0.82 -0.1 750,580 - AO353_03500 0.82 +1.0 750,580 - AO353_03500 0.82 -0.2 750,580 - AO353_03500 0.82 -0.7 750,607 - AO353_03500 0.83 -1.2 750,618 + AO353_03500 0.83 +0.6 750,618 + AO353_03500 0.83 +0.3 750,618 + AO353_03500 0.83 +0.2 750,619 - AO353_03500 0.84 +0.3 750,952 - -1.0 750,973 - +0.6 751,002 + +0.2 751,002 + +0.5 751,002 + -1.3 751,003 - +0.4 751,080 + +0.2 751,080 + +0.3 751,080 + +0.6 751,080 + -1.0 751,080 + -2.3 751,081 - -0.5 751,081 - +2.0 751,091 + -1.7 751,091 + +1.2 751,091 + -0.4 751,091 + +0.4 751,091 + -0.6 751,091 + -1.0 751,091 + -0.3 751,091 + +0.3 751,091 + +0.3 751,091 + +0.3 751,091 + +0.8 751,091 + +1.0 751,091 + +1.0 751,092 - +1.0 751,092 - +0.6 751,092 - +0.5 751,092 - -0.8 751,092 - -0.5 751,092 - +0.0 751,092 - -1.1 751,092 - +0.6 751,092 - -0.1 751,146 + -0.5 751,146 + -0.4 751,147 - +0.4 751,249 + +0.6 751,249 + -0.1 751,249 + -1.7 751,249 + +0.1 751,249 + -1.7 751,249 + +1.0 751,250 - -0.4 751,250 - +1.0 751,250 - +0.9 751,250 - +1.4 751,250 - +1.3 751,250 - -1.4 751,251 + -0.3 751,252 - -0.7 751,252 - -1.4 751,281 + +0.6 751,638 - AO353_03505 0.26 -1.1 751,703 + AO353_03505 0.31 +1.0 751,704 - AO353_03505 0.31 +0.7 751,704 - AO353_03505 0.31 -0.8 751,704 - AO353_03505 0.31 -1.1 751,704 - AO353_03505 0.31 +0.4 751,771 + AO353_03505 0.36 -0.5 751,771 + AO353_03505 0.36 -1.5 751,832 + AO353_03505 0.41 -0.1 751,832 + AO353_03505 0.41 -0.4 751,833 - AO353_03505 0.41 +0.3 752,084 + AO353_03505 0.59 +0.2 752,084 + AO353_03505 0.59 +0.0 752,085 - AO353_03505 0.59 -0.1 752,085 - AO353_03505 0.59 -0.5 752,085 - AO353_03505 0.59 -0.4 752,085 - AO353_03505 0.59 +2.1
Or see this region's nucleotide sequence