Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03365 and AO353_03370 are separated by 72 nucleotides AO353_03370 and AO353_03375 are separated by 296 nucleotides
AO353_03365: AO353_03365 - transcriptional regulator, at 716,070 to 716,939
_03365
AO353_03370: AO353_03370 - aldose epimerase, at 717,012 to 717,866
_03370
AO353_03375: AO353_03375 - porin, at 718,163 to 719,509
_03375
Position (kb) 717
718 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 716.050 kb on - strand at 716.058 kb on + strand at 716.058 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.067 kb on + strand at 716.068 kb on - strand at 716.068 kb on - strand at 716.068 kb on - strand at 716.068 kb on - strand at 716.068 kb on - strand at 716.068 kb on - strand at 716.189 kb on + strand, within AO353_03365 at 716.190 kb on - strand, within AO353_03365 at 716.319 kb on + strand, within AO353_03365 at 716.319 kb on + strand, within AO353_03365 at 716.320 kb on - strand, within AO353_03365 at 716.320 kb on - strand, within AO353_03365 at 716.320 kb on - strand, within AO353_03365 at 716.320 kb on - strand, within AO353_03365 at 716.320 kb on - strand, within AO353_03365 at 716.320 kb on - strand, within AO353_03365 at 716.320 kb on - strand, within AO353_03365 at 716.361 kb on + strand, within AO353_03365 at 716.361 kb on + strand, within AO353_03365 at 716.361 kb on + strand, within AO353_03365 at 716.362 kb on - strand, within AO353_03365 at 716.362 kb on - strand, within AO353_03365 at 716.362 kb on - strand, within AO353_03365 at 716.362 kb on - strand, within AO353_03365 at 716.362 kb on - strand, within AO353_03365 at 716.362 kb on - strand, within AO353_03365 at 716.362 kb on - strand, within AO353_03365 at 716.631 kb on + strand, within AO353_03365 at 716.632 kb on - strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.781 kb on + strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 716.782 kb on - strand, within AO353_03365 at 717.013 kb on + strand at 717.013 kb on + strand at 717.014 kb on - strand at 717.100 kb on - strand, within AO353_03370 at 717.234 kb on + strand, within AO353_03370 at 717.234 kb on + strand, within AO353_03370 at 717.234 kb on + strand, within AO353_03370 at 717.235 kb on - strand, within AO353_03370 at 717.235 kb on - strand, within AO353_03370 at 717.326 kb on - strand, within AO353_03370 at 717.326 kb on - strand, within AO353_03370 at 717.385 kb on + strand, within AO353_03370 at 717.385 kb on + strand, within AO353_03370 at 717.448 kb on - strand, within AO353_03370 at 717.448 kb on - strand, within AO353_03370 at 717.455 kb on + strand, within AO353_03370 at 717.850 kb on - strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.894 kb on + strand at 717.895 kb on - strand at 717.895 kb on - strand at 717.895 kb on - strand at 717.895 kb on - strand at 717.895 kb on - strand at 717.895 kb on - strand at 717.895 kb on - strand at 717.895 kb on - strand at 717.895 kb on - strand at 717.995 kb on + strand at 718.007 kb on - strand at 718.007 kb on - strand at 718.150 kb on + strand at 718.165 kb on - strand at 718.165 kb on - strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.239 kb on + strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.240 kb on - strand at 718.249 kb on + strand at 718.250 kb on - strand at 718.250 kb on - strand at 718.287 kb on + strand at 718.287 kb on + strand at 718.299 kb on + strand, within AO353_03375 at 718.299 kb on + strand, within AO353_03375 at 718.299 kb on + strand, within AO353_03375 at 718.300 kb on - strand, within AO353_03375 at 718.300 kb on - strand, within AO353_03375 at 718.300 kb on - strand, within AO353_03375 at 718.300 kb on - strand, within AO353_03375 at 718.300 kb on - strand, within AO353_03375 at 718.300 kb on - strand, within AO353_03375 at 718.300 kb on - strand, within AO353_03375 at 718.300 kb on - strand, within AO353_03375 at 718.306 kb on - strand, within AO353_03375 at 718.306 kb on - strand, within AO353_03375 at 718.306 kb on - strand, within AO353_03375 at 718.306 kb on - strand, within AO353_03375 at 718.306 kb on - strand, within AO353_03375 at 718.306 kb on - strand, within AO353_03375 at 718.344 kb on + strand, within AO353_03375 at 718.467 kb on + strand, within AO353_03375 at 718.467 kb on + strand, within AO353_03375 at 718.467 kb on + strand, within AO353_03375 at 718.468 kb on - strand, within AO353_03375 at 718.468 kb on - strand, within AO353_03375 at 718.468 kb on - strand, within AO353_03375 at 718.468 kb on - strand, within AO353_03375 at 718.468 kb on - strand, within AO353_03375 at 718.488 kb on + strand, within AO353_03375 at 718.488 kb on + strand, within AO353_03375 at 718.488 kb on + strand, within AO353_03375 at 718.488 kb on + strand, within AO353_03375 at 718.488 kb on + strand, within AO353_03375 at 718.488 kb on + strand, within AO353_03375 at 718.489 kb on - strand, within AO353_03375 at 718.489 kb on - strand, within AO353_03375 at 718.489 kb on - strand, within AO353_03375 at 718.489 kb on - strand, within AO353_03375 at 718.489 kb on - strand, within AO353_03375 at 718.489 kb on - strand, within AO353_03375 at 718.489 kb on - strand, within AO353_03375 at 718.673 kb on - strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.704 kb on + strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.705 kb on - strand, within AO353_03375 at 718.720 kb on - strand, within AO353_03375 at 718.720 kb on - strand, within AO353_03375 at 718.845 kb on + strand, within AO353_03375 at 718.845 kb on + strand, within AO353_03375 at 718.845 kb on + strand, within AO353_03375 at 718.846 kb on - strand, within AO353_03375 at 718.846 kb on - strand, within AO353_03375 at 718.846 kb on - strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.863 kb on + strand, within AO353_03375 at 718.864 kb on - strand, within AO353_03375 at 718.864 kb on - strand, within AO353_03375 at 718.864 kb on - strand, within AO353_03375 at 718.864 kb on - strand, within AO353_03375
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 716,050 - +0.6 716,058 + -0.7 716,058 + +0.5 716,067 + -0.6 716,067 + -1.0 716,067 + +2.3 716,067 + +0.8 716,067 + +0.1 716,067 + -0.0 716,067 + -0.1 716,067 + -0.9 716,067 + -1.4 716,067 + -1.0 716,067 + -1.5 716,067 + +0.3 716,067 + -0.0 716,067 + -0.2 716,068 - -0.2 716,068 - -0.5 716,068 - -0.2 716,068 - -1.2 716,068 - +0.5 716,068 - -0.4 716,189 + AO353_03365 0.14 -0.7 716,190 - AO353_03365 0.14 +0.9 716,319 + AO353_03365 0.29 -0.3 716,319 + AO353_03365 0.29 +0.8 716,320 - AO353_03365 0.29 -1.4 716,320 - AO353_03365 0.29 -0.6 716,320 - AO353_03365 0.29 +0.5 716,320 - AO353_03365 0.29 -0.2 716,320 - AO353_03365 0.29 -0.9 716,320 - AO353_03365 0.29 +2.0 716,320 - AO353_03365 0.29 -0.6 716,361 + AO353_03365 0.33 -1.2 716,361 + AO353_03365 0.33 -1.8 716,361 + AO353_03365 0.33 -2.2 716,362 - AO353_03365 0.34 +1.2 716,362 - AO353_03365 0.34 -0.4 716,362 - AO353_03365 0.34 +1.3 716,362 - AO353_03365 0.34 -1.6 716,362 - AO353_03365 0.34 -0.7 716,362 - AO353_03365 0.34 -0.7 716,362 - AO353_03365 0.34 -1.2 716,631 + AO353_03365 0.64 +0.6 716,632 - AO353_03365 0.65 -0.4 716,781 + AO353_03365 0.82 -0.2 716,781 + AO353_03365 0.82 +0.2 716,781 + AO353_03365 0.82 +0.1 716,781 + AO353_03365 0.82 -1.1 716,781 + AO353_03365 0.82 -0.5 716,781 + AO353_03365 0.82 -1.9 716,781 + AO353_03365 0.82 +0.2 716,781 + AO353_03365 0.82 -0.9 716,781 + AO353_03365 0.82 -1.9 716,781 + AO353_03365 0.82 +0.3 716,781 + AO353_03365 0.82 +0.5 716,781 + AO353_03365 0.82 +1.0 716,781 + AO353_03365 0.82 +0.3 716,781 + AO353_03365 0.82 +0.5 716,781 + AO353_03365 0.82 -2.0 716,781 + AO353_03365 0.82 +0.4 716,781 + AO353_03365 0.82 -0.5 716,782 - AO353_03365 0.82 +1.1 716,782 - AO353_03365 0.82 -2.3 716,782 - +0.6 716,782 - AO353_03365 0.82 +0.6 716,782 - AO353_03365 0.82 -0.4 716,782 - AO353_03365 0.82 -1.7 716,782 - AO353_03365 0.82 -0.9 716,782 - AO353_03365 0.82 -0.6 716,782 - AO353_03365 0.82 +0.8 716,782 - AO353_03365 0.82 +0.4 716,782 - AO353_03365 0.82 +0.3 716,782 - AO353_03365 0.82 +0.0 716,782 - AO353_03365 0.82 +0.4 716,782 - AO353_03365 0.82 -0.6 716,782 - AO353_03365 0.82 -0.0 717,013 + -1.1 717,013 + +0.0 717,014 - -0.4 717,100 - AO353_03370 0.10 -0.6 717,234 + AO353_03370 0.26 +2.2 717,234 + AO353_03370 0.26 -2.2 717,234 + AO353_03370 0.26 -0.4 717,235 - AO353_03370 0.26 -0.5 717,235 - AO353_03370 0.26 -2.0 717,326 - AO353_03370 0.37 +0.2 717,326 - AO353_03370 0.37 +0.0 717,385 + AO353_03370 0.44 -2.3 717,385 + AO353_03370 0.44 -0.7 717,448 - AO353_03370 0.51 -1.4 717,448 - AO353_03370 0.51 +1.1 717,455 + AO353_03370 0.52 -1.9 717,850 - -0.1 717,894 + +0.6 717,894 + -0.1 717,894 + -0.2 717,894 + +0.3 717,894 + -0.4 717,894 + -1.4 717,894 + -0.6 717,894 + +0.5 717,894 + +0.4 717,894 + +1.6 717,894 + +1.2 717,894 + -0.2 717,894 + -0.6 717,894 + +0.9 717,894 + -0.8 717,895 - -0.1 717,895 - +0.3 717,895 - +0.4 717,895 - +0.3 717,895 - -1.2 717,895 - -0.2 717,895 - -0.3 717,895 - -0.9 717,895 - +0.0 717,995 + -0.1 718,007 - +0.1 718,007 - -0.2 718,150 + +1.2 718,165 - +0.2 718,165 - +1.0 718,239 + -0.6 718,239 + +0.3 718,239 + -0.8 718,239 + +0.1 718,239 + +0.0 718,239 + -1.2 718,239 + -0.9 718,239 + -0.1 718,239 + +0.3 718,239 + -0.1 718,239 + -0.6 718,239 + +0.3 718,239 + +0.8 718,239 + -0.4 718,239 + +0.3 718,240 - -1.4 718,240 - +0.5 718,240 - +0.2 718,240 - -0.3 718,240 - +0.9 718,240 - +0.0 718,240 - -0.2 718,240 - +1.4 718,240 - +0.7 718,240 - -0.3 718,240 - +0.1 718,240 - -0.7 718,249 + -0.6 718,250 - -1.3 718,250 - +0.7 718,287 + +0.8 718,287 + -0.3 718,299 + AO353_03375 0.10 -0.4 718,299 + AO353_03375 0.10 +0.2 718,299 + AO353_03375 0.10 +0.2 718,300 - AO353_03375 0.10 -0.4 718,300 - AO353_03375 0.10 -1.7 718,300 - AO353_03375 0.10 -1.4 718,300 - AO353_03375 0.10 -0.4 718,300 - AO353_03375 0.10 +0.4 718,300 - AO353_03375 0.10 -1.2 718,300 - AO353_03375 0.10 -1.0 718,300 - AO353_03375 0.10 +0.0 718,306 - AO353_03375 0.11 +0.0 718,306 - AO353_03375 0.11 +3.2 718,306 - AO353_03375 0.11 -0.6 718,306 - AO353_03375 0.11 -1.6 718,306 - AO353_03375 0.11 +0.9 718,306 - AO353_03375 0.11 +0.1 718,344 + AO353_03375 0.13 +0.8 718,467 + AO353_03375 0.23 +0.4 718,467 + AO353_03375 0.23 +0.3 718,467 + AO353_03375 0.23 +1.3 718,468 - AO353_03375 0.23 +0.2 718,468 - AO353_03375 0.23 -0.7 718,468 - AO353_03375 0.23 -0.8 718,468 - AO353_03375 0.23 +0.6 718,468 - AO353_03375 0.23 -0.9 718,488 + AO353_03375 0.24 -0.9 718,488 + AO353_03375 0.24 -0.9 718,488 + AO353_03375 0.24 +0.9 718,488 + AO353_03375 0.24 -1.0 718,488 + AO353_03375 0.24 +0.3 718,488 + AO353_03375 0.24 +0.0 718,489 - AO353_03375 0.24 +0.0 718,489 - AO353_03375 0.24 +0.5 718,489 - AO353_03375 0.24 -1.7 718,489 - AO353_03375 0.24 -0.0 718,489 - AO353_03375 0.24 +0.7 718,489 - AO353_03375 0.24 +0.5 718,489 - AO353_03375 0.24 -1.7 718,673 - AO353_03375 0.38 +0.7 718,704 + AO353_03375 0.40 +0.2 718,704 + AO353_03375 0.40 +0.3 718,704 + AO353_03375 0.40 -1.0 718,704 + AO353_03375 0.40 +1.0 718,704 + AO353_03375 0.40 +1.1 718,704 + AO353_03375 0.40 -1.6 718,704 + AO353_03375 0.40 +1.6 718,704 + AO353_03375 0.40 +0.1 718,704 + AO353_03375 0.40 -0.3 718,705 - AO353_03375 0.40 -0.6 718,705 - AO353_03375 0.40 +0.0 718,705 - AO353_03375 0.40 -0.7 718,705 - AO353_03375 0.40 -0.8 718,705 - AO353_03375 0.40 +1.5 718,705 - AO353_03375 0.40 +0.3 718,705 - AO353_03375 0.40 -1.0 718,705 - AO353_03375 0.40 +0.6 718,720 - AO353_03375 0.41 -0.0 718,720 - AO353_03375 0.41 +0.7 718,845 + AO353_03375 0.51 -0.4 718,845 + AO353_03375 0.51 +0.0 718,845 + AO353_03375 0.51 +1.4 718,846 - AO353_03375 0.51 +0.6 718,846 - AO353_03375 0.51 +0.1 718,846 - AO353_03375 0.51 +0.9 718,863 + AO353_03375 0.52 +0.4 718,863 + AO353_03375 0.52 -0.1 718,863 + AO353_03375 0.52 -0.5 718,863 + AO353_03375 0.52 +0.1 718,863 + AO353_03375 0.52 -0.4 718,863 + AO353_03375 0.52 -0.0 718,863 + AO353_03375 0.52 +0.9 718,864 - AO353_03375 0.52 -1.4 718,864 - AO353_03375 0.52 -2.1 718,864 - AO353_03375 0.52 +0.4 718,864 - AO353_03375 0.52 -0.1
Or see this region's nucleotide sequence