Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02990 and AO353_02995 are separated by 122 nucleotides AO353_02995 and AO353_03000 are separated by 12 nucleotides AO353_03000 and AO353_03005 are separated by 63 nucleotides
AO353_02990: AO353_02990 - 6,7-dimethyl-8-ribityllumazine synthase, at 634,577 to 635,086
_02990
AO353_02995: AO353_02995 - succinylglutamate desuccinylase, at 635,209 to 636,219
_02995
AO353_03000: AO353_03000 - topoisomerase II, at 636,232 to 636,519
_03000
AO353_03005: AO353_03005 - succinylarginine dihydrolase, at 636,583 to 637,929
_03005
Position (kb) 635
636
637 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.211 kb on + strand at 634.211 kb on + strand at 634.212 kb on - strand at 634.212 kb on - strand at 634.212 kb on - strand at 634.212 kb on - strand at 634.245 kb on + strand at 634.245 kb on + strand at 634.245 kb on + strand at 634.245 kb on + strand at 634.245 kb on + strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.324 kb on + strand at 634.432 kb on + strand at 634.432 kb on + strand at 634.432 kb on + strand at 634.432 kb on + strand at 634.433 kb on - strand at 634.433 kb on - strand at 634.491 kb on + strand at 634.492 kb on - strand at 634.492 kb on - strand at 634.492 kb on - strand at 634.492 kb on - strand at 634.492 kb on - strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.516 kb on - strand at 634.516 kb on - strand at 634.516 kb on - strand at 634.516 kb on - strand at 634.516 kb on - strand at 634.521 kb on + strand at 634.521 kb on + strand at 634.521 kb on + strand at 634.522 kb on - strand at 634.522 kb on - strand at 634.540 kb on - strand at 634.679 kb on - strand, within AO353_02990 at 634.824 kb on + strand, within AO353_02990 at 634.825 kb on - strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.845 kb on - strand, within AO353_02990 at 634.845 kb on - strand, within AO353_02990 at 634.845 kb on - strand, within AO353_02990 at 635.076 kb on + strand at 635.085 kb on - strand at 635.105 kb on + strand at 635.105 kb on + strand at 635.106 kb on - strand at 635.106 kb on - strand at 635.112 kb on - strand at 635.143 kb on + strand at 635.189 kb on + strand at 635.351 kb on + strand, within AO353_02995 at 635.352 kb on - strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.615 kb on + strand, within AO353_02995 at 635.616 kb on - strand, within AO353_02995 at 635.616 kb on - strand, within AO353_02995 at 635.726 kb on + strand, within AO353_02995 at 635.777 kb on + strand, within AO353_02995 at 635.778 kb on - strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 636.017 kb on - strand, within AO353_02995 at 636.017 kb on - strand, within AO353_02995 at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.220 kb on - strand at 636.220 kb on - strand at 636.313 kb on + strand, within AO353_03000 at 636.313 kb on + strand, within AO353_03000 at 636.314 kb on - strand, within AO353_03000 at 636.314 kb on - strand, within AO353_03000 at 636.322 kb on - strand, within AO353_03000 at 636.523 kb on + strand at 636.541 kb on + strand at 636.541 kb on + strand at 636.541 kb on + strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.603 kb on - strand at 636.619 kb on - strand at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.808 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.912 kb on - strand, within AO353_03005 at 637.004 kb on + strand, within AO353_03005 at 637.004 kb on + strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.140 kb on - strand, within AO353_03005
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 634,209 + -1.3 634,209 + -1.7 634,209 + +0.8 634,209 + +0.4 634,209 + -0.6 634,209 + -0.1 634,209 + -1.2 634,209 + +0.6 634,209 + +0.4 634,209 + +0.1 634,209 + +0.8 634,209 + +0.1 634,209 + +1.6 634,209 + -1.6 634,209 + -0.3 634,209 + +0.6 634,209 + -0.0 634,209 + -0.1 634,210 - +0.6 634,210 - -1.3 634,210 - -2.1 634,210 - -1.0 634,210 - +0.1 634,210 - +0.8 634,210 - -0.7 634,210 - +0.7 634,210 - -0.6 634,210 - +0.6 634,210 - -0.2 634,210 - +0.4 634,210 - -0.9 634,210 - +0.8 634,210 - -2.1 634,210 - -0.3 634,210 - +0.5 634,210 - +0.8 634,210 - +0.2 634,210 - +0.3 634,210 - -0.6 634,210 - -2.2 634,210 - -0.4 634,210 - -0.4 634,210 - -1.2 634,210 - -1.4 634,210 - +1.6 634,211 + +0.7 634,211 + -2.1 634,212 - +0.6 634,212 - -0.0 634,212 - +1.2 634,212 - +0.7 634,245 + -2.0 634,245 + -1.4 634,245 + -0.1 634,245 + +2.9 634,245 + -2.7 634,246 - -0.3 634,246 - -2.2 634,246 - +0.5 634,246 - -2.0 634,246 - +0.8 634,246 - -0.7 634,246 - +1.3 634,246 - +1.7 634,246 - +0.1 634,246 - -0.6 634,246 - -2.2 634,246 - +0.6 634,246 - +0.4 634,246 - +0.3 634,324 + -0.0 634,432 + -1.7 634,432 + -0.4 634,432 + -1.4 634,432 + -0.0 634,433 - -0.2 634,433 - +0.5 634,491 + +1.6 634,492 - -1.0 634,492 - -0.2 634,492 - -0.3 634,492 - +0.4 634,492 - -0.0 634,515 + -1.0 634,515 + -0.7 634,515 + -0.0 634,515 + +0.2 634,515 + +0.8 634,515 + -0.6 634,516 - +1.8 634,516 - -0.7 634,516 - +1.2 634,516 - -2.1 634,516 - -1.2 634,521 + -0.5 634,521 + -0.6 634,521 + -0.3 634,522 - +0.4 634,522 - +0.3 634,540 - +1.4 634,679 - AO353_02990 0.20 -1.2 634,824 + AO353_02990 0.48 +0.6 634,825 - AO353_02990 0.49 +0.6 634,844 + AO353_02990 0.52 -0.1 634,844 + AO353_02990 0.52 -0.7 634,844 + AO353_02990 0.52 +1.0 634,844 + AO353_02990 0.52 +0.3 634,844 + AO353_02990 0.52 -0.5 634,844 + AO353_02990 0.52 +0.3 634,845 - AO353_02990 0.53 -0.1 634,845 - AO353_02990 0.53 -0.4 634,845 - AO353_02990 0.53 -1.1 635,076 + +0.4 635,085 - -0.7 635,105 + -0.8 635,105 + -0.6 635,106 - +0.4 635,106 - -0.0 635,112 - -1.4 635,143 + -2.1 635,189 + +0.2 635,351 + AO353_02995 0.14 -0.2 635,352 - AO353_02995 0.14 -1.0 635,609 + AO353_02995 0.40 -1.6 635,609 + AO353_02995 0.40 +0.2 635,609 + AO353_02995 0.40 -1.1 635,610 - AO353_02995 0.40 +0.1 635,610 - AO353_02995 0.40 -1.4 635,610 - AO353_02995 0.40 -0.2 635,610 - AO353_02995 0.40 -1.4 635,610 - AO353_02995 0.40 -0.5 635,615 + AO353_02995 0.40 -1.7 635,616 - AO353_02995 0.40 -0.0 635,616 - AO353_02995 0.40 -0.3 635,726 + AO353_02995 0.51 -0.2 635,777 + AO353_02995 0.56 -1.6 635,778 - AO353_02995 0.56 -1.9 635,961 + AO353_02995 0.74 -2.1 635,961 + AO353_02995 0.74 -1.0 635,961 + AO353_02995 0.74 -0.3 635,961 + AO353_02995 0.74 -1.0 635,961 + AO353_02995 0.74 -1.7 635,961 + AO353_02995 0.74 -0.4 635,962 - AO353_02995 0.74 -1.3 635,962 - AO353_02995 0.74 +0.4 635,962 - AO353_02995 0.74 -1.7 636,017 - AO353_02995 0.80 -0.1 636,017 - AO353_02995 0.80 -0.4 636,219 + -1.4 636,219 + -0.4 636,219 + +0.8 636,219 + -0.6 636,219 + +1.6 636,219 + +0.4 636,219 + -2.1 636,220 - +1.1 636,220 - +0.8 636,313 + AO353_03000 0.28 -0.2 636,313 + AO353_03000 0.28 -0.3 636,314 - AO353_03000 0.28 -0.0 636,314 - AO353_03000 0.28 +0.7 636,322 - AO353_03000 0.31 -0.6 636,523 + -1.2 636,541 + -0.7 636,541 + -0.7 636,541 + -0.1 636,542 - +0.7 636,542 - +0.3 636,542 - +0.9 636,542 - +1.7 636,542 - -0.5 636,542 - +0.6 636,603 - -0.2 636,619 - +0.8 636,741 - AO353_03005 0.12 +1.6 636,741 - AO353_03005 0.12 -0.4 636,741 - AO353_03005 0.12 -0.0 636,741 - AO353_03005 0.12 -0.4 636,741 - AO353_03005 0.12 -0.2 636,741 - AO353_03005 0.12 +0.1 636,808 + AO353_03005 0.17 +0.1 636,911 + AO353_03005 0.24 -0.7 636,911 + AO353_03005 0.24 -1.3 636,911 + AO353_03005 0.24 -0.6 636,912 - AO353_03005 0.24 -0.4 637,004 + AO353_03005 0.31 +0.6 637,004 + AO353_03005 0.31 -1.2 637,005 - AO353_03005 0.31 -0.2 637,005 - AO353_03005 0.31 +0.1 637,005 - AO353_03005 0.31 +0.3 637,005 - AO353_03005 0.31 +1.3 637,139 + AO353_03005 0.41 -0.7 637,139 + AO353_03005 0.41 -1.3 637,140 - AO353_03005 0.41 +0.2
Or see this region's nucleotide sequence