Experiment: Tetracycline 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02435 and AO353_02440 are separated by 187 nucleotides AO353_02440 and AO353_02445 are separated by 127 nucleotides
AO353_02435: AO353_02435 - NAD(P)H-quinone oxidoreductase, at 518,199 to 519,161
_02435
AO353_02440: AO353_02440 - peptidase S41, at 519,349 to 521,469
_02440
AO353_02445: AO353_02445 - diguanylate phosphodiesterase, at 521,597 to 523,372
_02445
Position (kb) 519
520
521
522 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 518.512 kb on - strand, within AO353_02435 at 518.512 kb on - strand, within AO353_02435 at 518.533 kb on + strand, within AO353_02435 at 518.533 kb on + strand, within AO353_02435 at 518.533 kb on + strand, within AO353_02435 at 518.533 kb on + strand, within AO353_02435 at 518.533 kb on + strand, within AO353_02435 at 518.533 kb on + strand, within AO353_02435 at 518.533 kb on + strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.534 kb on - strand, within AO353_02435 at 518.641 kb on + strand, within AO353_02435 at 518.642 kb on - strand, within AO353_02435 at 518.700 kb on + strand, within AO353_02435 at 518.700 kb on + strand, within AO353_02435 at 518.700 kb on + strand, within AO353_02435 at 518.700 kb on + strand, within AO353_02435 at 518.700 kb on + strand, within AO353_02435 at 518.700 kb on + strand, within AO353_02435 at 518.700 kb on + strand, within AO353_02435 at 518.701 kb on - strand, within AO353_02435 at 518.701 kb on - strand, within AO353_02435 at 518.701 kb on - strand, within AO353_02435 at 518.806 kb on + strand, within AO353_02435 at 518.806 kb on + strand, within AO353_02435 at 518.806 kb on + strand, within AO353_02435 at 518.807 kb on - strand, within AO353_02435 at 518.807 kb on - strand, within AO353_02435 at 518.807 kb on - strand, within AO353_02435 at 518.807 kb on - strand, within AO353_02435 at 518.807 kb on - strand, within AO353_02435 at 518.862 kb on + strand, within AO353_02435 at 518.862 kb on + strand, within AO353_02435 at 518.862 kb on + strand, within AO353_02435 at 518.863 kb on - strand, within AO353_02435 at 518.863 kb on - strand, within AO353_02435 at 518.863 kb on - strand, within AO353_02435 at 518.863 kb on - strand, within AO353_02435 at 519.093 kb on + strand at 519.093 kb on + strand at 519.094 kb on - strand at 519.094 kb on - strand at 519.172 kb on + strand at 519.220 kb on + strand at 519.220 kb on + strand at 519.221 kb on - strand at 519.309 kb on + strand at 519.345 kb on + strand at 519.345 kb on + strand at 519.345 kb on + strand at 519.346 kb on - strand at 519.346 kb on - strand at 519.346 kb on - strand at 519.348 kb on + strand at 519.348 kb on + strand at 519.348 kb on + strand at 519.348 kb on + strand at 519.348 kb on + strand at 519.348 kb on + strand at 519.453 kb on + strand at 519.453 kb on + strand at 519.454 kb on - strand at 519.454 kb on - strand at 519.454 kb on - strand at 519.454 kb on - strand at 519.468 kb on + strand at 519.468 kb on + strand at 519.469 kb on - strand at 519.469 kb on - strand at 519.469 kb on - strand at 519.469 kb on - strand at 519.547 kb on + strand at 519.547 kb on + strand at 519.547 kb on + strand at 519.548 kb on - strand at 519.548 kb on - strand at 519.548 kb on - strand at 519.548 kb on - strand at 519.589 kb on + strand, within AO353_02440 at 519.589 kb on + strand, within AO353_02440 at 519.589 kb on + strand, within AO353_02440 at 519.590 kb on - strand, within AO353_02440 at 519.590 kb on - strand, within AO353_02440 at 519.598 kb on + strand, within AO353_02440 at 519.598 kb on + strand, within AO353_02440 at 519.598 kb on + strand, within AO353_02440 at 519.598 kb on + strand, within AO353_02440 at 519.598 kb on + strand, within AO353_02440 at 519.598 kb on + strand, within AO353_02440 at 519.598 kb on + strand, within AO353_02440 at 519.598 kb on + strand, within AO353_02440 at 519.599 kb on - strand, within AO353_02440 at 519.599 kb on - strand, within AO353_02440 at 519.599 kb on - strand, within AO353_02440 at 519.628 kb on + strand, within AO353_02440 at 519.629 kb on - strand, within AO353_02440 at 519.724 kb on + strand, within AO353_02440 at 519.724 kb on + strand, within AO353_02440 at 519.725 kb on - strand, within AO353_02440 at 519.725 kb on - strand, within AO353_02440 at 519.970 kb on + strand, within AO353_02440 at 520.027 kb on + strand, within AO353_02440 at 520.027 kb on + strand, within AO353_02440 at 520.027 kb on + strand, within AO353_02440 at 520.028 kb on - strand, within AO353_02440 at 520.028 kb on - strand, within AO353_02440 at 520.051 kb on + strand, within AO353_02440 at 520.052 kb on - strand, within AO353_02440 at 520.052 kb on - strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.069 kb on + strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.070 kb on - strand, within AO353_02440 at 520.169 kb on + strand, within AO353_02440 at 520.169 kb on + strand, within AO353_02440 at 520.170 kb on - strand, within AO353_02440 at 520.471 kb on + strand, within AO353_02440 at 520.471 kb on + strand, within AO353_02440 at 520.472 kb on - strand, within AO353_02440 at 520.472 kb on - strand, within AO353_02440 at 520.472 kb on - strand, within AO353_02440 at 520.472 kb on - strand, within AO353_02440 at 520.472 kb on - strand, within AO353_02440 at 520.472 kb on - strand, within AO353_02440 at 520.504 kb on + strand, within AO353_02440 at 520.504 kb on + strand, within AO353_02440 at 520.505 kb on - strand, within AO353_02440 at 520.505 kb on - strand, within AO353_02440 at 520.505 kb on - strand, within AO353_02440 at 520.543 kb on + strand, within AO353_02440 at 520.703 kb on + strand, within AO353_02440 at 520.703 kb on + strand, within AO353_02440 at 520.703 kb on + strand, within AO353_02440 at 520.703 kb on + strand, within AO353_02440 at 520.703 kb on + strand, within AO353_02440 at 520.703 kb on + strand, within AO353_02440 at 520.704 kb on - strand, within AO353_02440 at 520.704 kb on - strand, within AO353_02440 at 520.704 kb on - strand, within AO353_02440 at 520.707 kb on + strand, within AO353_02440 at 520.730 kb on + strand, within AO353_02440 at 520.730 kb on + strand, within AO353_02440 at 520.730 kb on + strand, within AO353_02440 at 520.731 kb on - strand, within AO353_02440 at 520.759 kb on + strand, within AO353_02440 at 520.759 kb on + strand, within AO353_02440 at 520.759 kb on + strand, within AO353_02440 at 520.759 kb on + strand, within AO353_02440 at 520.759 kb on + strand, within AO353_02440 at 520.759 kb on + strand, within AO353_02440 at 520.759 kb on + strand, within AO353_02440 at 520.760 kb on - strand, within AO353_02440 at 520.760 kb on - strand, within AO353_02440 at 520.837 kb on + strand, within AO353_02440 at 520.837 kb on + strand, within AO353_02440 at 520.837 kb on + strand, within AO353_02440 at 520.837 kb on + strand, within AO353_02440 at 520.838 kb on - strand, within AO353_02440 at 520.838 kb on - strand, within AO353_02440 at 521.108 kb on - strand, within AO353_02440 at 521.108 kb on - strand, within AO353_02440 at 521.370 kb on + strand at 521.370 kb on + strand at 521.370 kb on + strand at 521.370 kb on + strand at 521.370 kb on + strand at 521.371 kb on - strand at 521.371 kb on - strand at 521.395 kb on + strand at 521.395 kb on + strand at 521.428 kb on + strand at 521.428 kb on + strand at 521.428 kb on + strand at 521.428 kb on + strand at 521.429 kb on - strand at 521.478 kb on + strand at 521.479 kb on - strand at 521.531 kb on + strand at 521.532 kb on - strand at 521.532 kb on - strand at 521.580 kb on + strand at 521.634 kb on + strand at 521.781 kb on + strand, within AO353_02445 at 521.781 kb on + strand, within AO353_02445 at 521.782 kb on - strand, within AO353_02445 at 521.782 kb on - strand, within AO353_02445 at 522.116 kb on + strand, within AO353_02445 at 522.116 kb on + strand, within AO353_02445 at 522.116 kb on + strand, within AO353_02445 at 522.116 kb on + strand, within AO353_02445 at 522.117 kb on - strand, within AO353_02445 at 522.117 kb on - strand, within AO353_02445 at 522.117 kb on - strand, within AO353_02445 at 522.117 kb on - strand, within AO353_02445 at 522.140 kb on - strand, within AO353_02445 at 522.140 kb on - strand, within AO353_02445 at 522.235 kb on + strand, within AO353_02445 at 522.296 kb on + strand, within AO353_02445 at 522.296 kb on + strand, within AO353_02445 at 522.296 kb on + strand, within AO353_02445 at 522.429 kb on + strand, within AO353_02445 at 522.430 kb on - strand, within AO353_02445
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml remove 518,512 - AO353_02435 0.33 +0.8 518,512 - AO353_02435 0.33 -1.1 518,533 + AO353_02435 0.35 -2.2 518,533 + AO353_02435 0.35 -0.4 518,533 + AO353_02435 0.35 -2.0 518,533 + AO353_02435 0.35 -0.2 518,533 + AO353_02435 0.35 +1.2 518,533 + AO353_02435 0.35 -1.2 518,533 + AO353_02435 0.35 -0.7 518,534 - AO353_02435 0.35 -0.5 518,534 - AO353_02435 0.35 +0.0 518,534 - AO353_02435 0.35 -0.8 518,534 - AO353_02435 0.35 -0.1 518,534 - AO353_02435 0.35 +1.7 518,534 - AO353_02435 0.35 +0.5 518,534 - AO353_02435 0.35 +0.2 518,534 - AO353_02435 0.35 -0.5 518,534 - AO353_02435 0.35 -0.4 518,534 - AO353_02435 0.35 -1.1 518,534 - AO353_02435 0.35 -1.3 518,641 + AO353_02435 0.46 +0.3 518,642 - AO353_02435 0.46 -0.7 518,700 + AO353_02435 0.52 +0.4 518,700 + AO353_02435 0.52 -0.8 518,700 + AO353_02435 0.52 +0.5 518,700 + AO353_02435 0.52 -0.1 518,700 + AO353_02435 0.52 -0.0 518,700 + AO353_02435 0.52 -0.0 518,700 + AO353_02435 0.52 +1.3 518,701 - AO353_02435 0.52 -0.6 518,701 - AO353_02435 0.52 -0.8 518,701 - AO353_02435 0.52 -0.3 518,806 + AO353_02435 0.63 -0.4 518,806 + AO353_02435 0.63 -0.4 518,806 + AO353_02435 0.63 -0.6 518,807 - AO353_02435 0.63 -1.5 518,807 - AO353_02435 0.63 +0.3 518,807 - AO353_02435 0.63 -1.5 518,807 - AO353_02435 0.63 -1.0 518,807 - AO353_02435 0.63 -1.1 518,862 + AO353_02435 0.69 -1.1 518,862 + AO353_02435 0.69 +1.5 518,862 + AO353_02435 0.69 -0.4 518,863 - AO353_02435 0.69 +0.1 518,863 - AO353_02435 0.69 +0.7 518,863 - AO353_02435 0.69 +0.5 518,863 - AO353_02435 0.69 +0.1 519,093 + -0.1 519,093 + +0.1 519,094 - +0.1 519,094 - -0.8 519,172 + -0.2 519,220 + -0.3 519,220 + +0.3 519,221 - +0.1 519,309 + +0.9 519,345 + -1.0 519,345 + -0.7 519,345 + -0.1 519,346 - +0.2 519,346 - -0.8 519,346 - -1.5 519,348 + -1.1 519,348 + -0.0 519,348 + -0.8 519,348 + -1.2 519,348 + -1.7 519,348 + -0.7 519,453 + -1.1 519,453 + -0.8 519,454 - -1.1 519,454 - +1.5 519,454 - -2.4 519,454 - +0.3 519,468 + +0.7 519,468 + -0.1 519,469 - -0.8 519,469 - -0.3 519,469 - -0.5 519,469 - -0.1 519,547 + +0.5 519,547 + -0.5 519,547 + -1.5 519,548 - -0.9 519,548 - -2.2 519,548 - -1.0 519,548 - -3.4 519,589 + AO353_02440 0.11 -2.2 519,589 + AO353_02440 0.11 -2.4 519,589 + AO353_02440 0.11 -1.3 519,590 - AO353_02440 0.11 -2.1 519,590 - AO353_02440 0.11 -0.8 519,598 + AO353_02440 0.12 +0.5 519,598 + AO353_02440 0.12 +0.5 519,598 + AO353_02440 0.12 -2.8 519,598 + AO353_02440 0.12 -0.4 519,598 + AO353_02440 0.12 -0.8 519,598 + AO353_02440 0.12 -1.5 519,598 + AO353_02440 0.12 -1.5 519,598 + AO353_02440 0.12 -0.3 519,599 - AO353_02440 0.12 -1.3 519,599 - AO353_02440 0.12 -2.1 519,599 - AO353_02440 0.12 -0.5 519,628 + AO353_02440 0.13 -0.1 519,629 - AO353_02440 0.13 -1.0 519,724 + AO353_02440 0.18 -1.3 519,724 + AO353_02440 0.18 -1.0 519,725 - AO353_02440 0.18 -0.8 519,725 - AO353_02440 0.18 -0.5 519,970 + AO353_02440 0.29 -1.2 520,027 + AO353_02440 0.32 -0.4 520,027 + AO353_02440 0.32 -1.7 520,027 + AO353_02440 0.32 -1.4 520,028 - AO353_02440 0.32 -2.1 520,028 - AO353_02440 0.32 -0.4 520,051 + AO353_02440 0.33 -0.1 520,052 - AO353_02440 0.33 -2.7 520,052 - AO353_02440 0.33 +0.2 520,069 + AO353_02440 0.34 -1.3 520,069 + AO353_02440 0.34 -2.6 520,069 + AO353_02440 0.34 -1.4 520,069 + AO353_02440 0.34 -0.2 520,069 + AO353_02440 0.34 -2.7 520,069 + -0.5 520,069 + AO353_02440 0.34 -2.6 520,069 + AO353_02440 0.34 -0.5 520,069 + AO353_02440 0.34 -1.4 520,069 + AO353_02440 0.34 -1.5 520,069 + AO353_02440 0.34 +0.3 520,069 + AO353_02440 0.34 -1.8 520,070 - AO353_02440 0.34 -1.1 520,070 - AO353_02440 0.34 -2.1 520,070 - AO353_02440 0.34 -0.3 520,070 - AO353_02440 0.34 -2.4 520,070 - AO353_02440 0.34 -1.7 520,070 - +1.5 520,070 - AO353_02440 0.34 -0.1 520,070 - AO353_02440 0.34 -1.8 520,070 - AO353_02440 0.34 -1.7 520,070 - AO353_02440 0.34 -2.2 520,070 - AO353_02440 0.34 -0.7 520,070 - AO353_02440 0.34 -1.3 520,070 - AO353_02440 0.34 -1.7 520,070 - AO353_02440 0.34 +0.5 520,070 - AO353_02440 0.34 -2.0 520,070 - AO353_02440 0.34 -1.8 520,070 - AO353_02440 0.34 -1.4 520,070 - AO353_02440 0.34 -1.8 520,169 + AO353_02440 0.39 -2.3 520,169 + AO353_02440 0.39 -0.5 520,170 - AO353_02440 0.39 -1.7 520,471 + AO353_02440 0.53 -0.8 520,471 + AO353_02440 0.53 -1.3 520,472 - AO353_02440 0.53 -1.0 520,472 - AO353_02440 0.53 +0.5 520,472 - AO353_02440 0.53 -0.8 520,472 - AO353_02440 0.53 -2.1 520,472 - AO353_02440 0.53 -0.3 520,472 - AO353_02440 0.53 -3.3 520,504 + AO353_02440 0.54 -1.5 520,504 + AO353_02440 0.54 -1.1 520,505 - AO353_02440 0.55 -1.2 520,505 - AO353_02440 0.55 -0.5 520,505 - AO353_02440 0.55 -2.0 520,543 + AO353_02440 0.56 +0.5 520,703 + AO353_02440 0.64 -2.3 520,703 + AO353_02440 0.64 -0.5 520,703 + AO353_02440 0.64 -1.5 520,703 + AO353_02440 0.64 -0.7 520,703 + AO353_02440 0.64 -1.7 520,703 + AO353_02440 0.64 -2.7 520,704 - AO353_02440 0.64 -1.8 520,704 - AO353_02440 0.64 -1.8 520,704 - AO353_02440 0.64 -1.3 520,707 + AO353_02440 0.64 +0.2 520,730 + AO353_02440 0.65 -1.1 520,730 + AO353_02440 0.65 -0.8 520,730 + AO353_02440 0.65 -0.5 520,731 - AO353_02440 0.65 -1.9 520,759 + AO353_02440 0.66 -2.6 520,759 + AO353_02440 0.66 -2.6 520,759 + AO353_02440 0.66 -3.2 520,759 + AO353_02440 0.66 -1.5 520,759 + AO353_02440 0.66 +1.1 520,759 + AO353_02440 0.66 +0.3 520,759 + AO353_02440 0.66 -1.9 520,760 - AO353_02440 0.67 -1.3 520,760 - AO353_02440 0.67 -0.5 520,837 + AO353_02440 0.70 -1.5 520,837 + AO353_02440 0.70 -0.3 520,837 + AO353_02440 0.70 -0.3 520,837 + AO353_02440 0.70 -1.1 520,838 - AO353_02440 0.70 -1.1 520,838 - AO353_02440 0.70 -1.4 521,108 - AO353_02440 0.83 -2.1 521,108 - AO353_02440 0.83 -1.7 521,370 + -1.1 521,370 + -2.4 521,370 + -2.5 521,370 + -0.6 521,370 + -2.1 521,371 - -2.3 521,371 - -0.5 521,395 + -1.9 521,395 + -1.3 521,428 + +1.5 521,428 + -1.7 521,428 + -2.5 521,428 + -1.0 521,429 - -2.3 521,478 + -1.0 521,479 - -0.6 521,531 + -0.8 521,532 - -0.5 521,532 - -0.1 521,580 + -2.1 521,634 + +0.8 521,781 + AO353_02445 0.10 -0.0 521,781 + AO353_02445 0.10 +0.0 521,782 - AO353_02445 0.10 +0.3 521,782 - AO353_02445 0.10 +0.5 522,116 + AO353_02445 0.29 +0.5 522,116 + AO353_02445 0.29 -0.7 522,116 + AO353_02445 0.29 +0.1 522,116 + AO353_02445 0.29 +0.3 522,117 - AO353_02445 0.29 +0.4 522,117 - AO353_02445 0.29 -1.7 522,117 - AO353_02445 0.29 -0.8 522,117 - AO353_02445 0.29 -0.4 522,140 - AO353_02445 0.31 -0.9 522,140 - AO353_02445 0.31 -0.1 522,235 + AO353_02445 0.36 -0.8 522,296 + AO353_02445 0.39 -0.1 522,296 + AO353_02445 0.39 -0.3 522,296 + AO353_02445 0.39 -1.5 522,429 + AO353_02445 0.47 +0.8 522,430 - AO353_02445 0.47 -0.8
Or see this region's nucleotide sequence